Novoalign is a powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms. It comes as part of a suit of programs (novocraft). This is a repackaging of the binaries made available by Novocraft that do not need a license. IMPORTANT Because of restrictions at the Novocraft website you can not download the package directly. You must go via the main download page.