The following packages will be installed: EMBASSY Fetching CONTENTS... 0%100%100%100%100%100%Done Fetching EMBASSY.SlackBuild... 0%100%100%100%100%100%Done Fetching EMBASSY.info... 0%100%100%100%100%100%Done Fetching README... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done CBSTOOLS-1.0.0.650/ CBSTOOLS-1.0.0.650/config.sub CBSTOOLS-1.0.0.650/src/ CBSTOOLS-1.0.0.650/src/eyinoyang.c CBSTOOLS-1.0.0.650/src/elipop.c CBSTOOLS-1.0.0.650/src/enetnglyc.c CBSTOOLS-1.0.0.650/src/esignalp.c CBSTOOLS-1.0.0.650/src/enetoglyc.c CBSTOOLS-1.0.0.650/src/etmhmm.c CBSTOOLS-1.0.0.650/src/config.h.in CBSTOOLS-1.0.0.650/src/eprop.c CBSTOOLS-1.0.0.650/src/echlorop.c CBSTOOLS-1.0.0.650/src/enetphos.c CBSTOOLS-1.0.0.650/src/Makefile.am CBSTOOLS-1.0.0.650/src/Makefile.in CBSTOOLS-1.0.0.650/ltmain.sh CBSTOOLS-1.0.0.650/install-sh CBSTOOLS-1.0.0.650/INSTALL CBSTOOLS-1.0.0.650/emboss_acd/ CBSTOOLS-1.0.0.650/emboss_acd/enetoglyc.acd CBSTOOLS-1.0.0.650/emboss_acd/enetnglyc.acd 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-lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT enetphos.o -MD -MP -MF .deps/enetphos.Tpo -c -o enetphos.o enetphos.c mv -f .deps/enetphos.Tpo .deps/enetphos.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o enetphos enetphos.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o enetphos enetphos.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eprop.o -MD -MP -MF .deps/eprop.Tpo -c -o eprop.o eprop.c mv -f .deps/eprop.Tpo .deps/eprop.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eprop eprop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eprop eprop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eyinoyang.o -MD -MP -MF .deps/eyinoyang.Tpo -c -o eyinoyang.o eyinoyang.c mv -f .deps/eyinoyang.Tpo .deps/eyinoyang.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eyinoyang eyinoyang.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eyinoyang eyinoyang.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT echlorop.o -MD -MP -MF .deps/echlorop.Tpo -c -o echlorop.o echlorop.c mv -f .deps/echlorop.Tpo .deps/echlorop.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o echlorop echlorop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o echlorop echlorop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT elipop.o -MD -MP -MF .deps/elipop.Tpo -c -o elipop.o elipop.c mv -f .deps/elipop.Tpo .deps/elipop.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o elipop elipop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o elipop elipop.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c esignalp etmhmm enetnglyc enetoglyc enetphos eprop eyinoyang echlorop elipop '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c esignalp /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/esignalp libtool: install: /usr/bin/ginstall -c etmhmm /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/etmhmm libtool: install: /usr/bin/ginstall -c enetnglyc /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/enetnglyc libtool: install: /usr/bin/ginstall -c enetoglyc /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/enetoglyc libtool: install: /usr/bin/ginstall -c enetphos /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/enetphos libtool: install: /usr/bin/ginstall -c eprop /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eprop libtool: install: /usr/bin/ginstall -c eyinoyang /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eyinoyang libtool: install: /usr/bin/ginstall -c echlorop /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/echlorop libtool: install: /usr/bin/ginstall -c elipop /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/elipop make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 echlorop.acd elipop.acd enetnglyc.acd enetoglyc.acd enetphos.acd eprop.acd esignalp.acd etmhmm.acd eyinoyang.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/cbstools' /usr/bin/ginstall -c -m 644 index.html echlorop.html elipop.html enetnglyc.html enetoglyc.html enetphos.html eprop.html esignalp.html etmhmm.html eyinoyang.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/cbstools' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 echlorop.txt elipop.txt enetnglyc.txt enetoglyc.txt enetphos.txt eprop.txt esignalp.txt etmhmm.txt eyinoyang.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CBSTOOLS-1.0.0.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eomega.o -MD -MP -MF .deps/eomega.Tpo -c -o eomega.o eomega.c mv -f .deps/eomega.Tpo .deps/eomega.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eomega eomega.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eomega eomega.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eomegapp.o -MD -MP -MF .deps/eomegapp.Tpo -c -o eomegapp.o eomegapp.c mv -f .deps/eomegapp.Tpo .deps/eomegapp.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegapp eomegapp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegapp eomegapp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eomegaps.o -MD -MP -MF .deps/eomegaps.Tpo -c -o eomegaps.o eomegaps.c mv -f .deps/eomegaps.Tpo .deps/eomegaps.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegaps eomegaps.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegaps eomegaps.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eomegasp.o -MD -MP -MF .deps/eomegasp.Tpo -c -o eomegasp.o eomegasp.c mv -f .deps/eomegasp.Tpo .deps/eomegasp.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegasp eomegasp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegasp eomegasp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eomegash.o -MD -MP -MF .deps/eomegash.Tpo -c -o eomegash.o eomegash.c mv -f .deps/eomegash.Tpo .deps/eomegash.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegash eomegash.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eomegash eomegash.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c eomega eomegapp eomegaps eomegasp eomegash '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c eomega /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eomega libtool: install: /usr/bin/ginstall -c eomegapp /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eomegapp libtool: install: /usr/bin/ginstall -c eomegaps /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eomegaps libtool: install: /usr/bin/ginstall -c eomegasp /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eomegasp libtool: install: /usr/bin/ginstall -c eomegash /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eomegash make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 eomega.acd eomegapp.acd eomegaps.acd eomegasp.acd eomegash.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/clustalomega' /usr/bin/ginstall -c -m 644 index.html eomega.html eomegapp.html eomegaps.html eomegash.html eomegasp.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/clustalomega' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 eomega.txt eomegapp.txt eomegaps.txt eomegash.txt eomegasp.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/CLUSTALOMEGA-1.1.0' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT cathparse.o -MD -MP -MF .deps/cathparse.Tpo -c -o cathparse.o cathparse.c mv -f .deps/cathparse.Tpo .deps/cathparse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o cathparse cathparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o cathparse cathparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainnr.o -MD -MP -MF .deps/domainnr.Tpo -c -o domainnr.o domainnr.c mv -f .deps/domainnr.Tpo .deps/domainnr.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainnr domainnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainnr domainnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainreso.o -MD -MP -MF .deps/domainreso.Tpo -c -o domainreso.o domainreso.c mv -f .deps/domainreso.Tpo .deps/domainreso.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainreso domainreso.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainreso domainreso.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainseqs.o -MD -MP -MF .deps/domainseqs.Tpo -c -o domainseqs.o domainseqs.c mv -f .deps/domainseqs.Tpo .deps/domainseqs.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainseqs domainseqs.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainseqs domainseqs.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainsse.o -MD -MP -MF .deps/domainsse.Tpo -c -o domainsse.o domainsse.c mv -f .deps/domainsse.Tpo .deps/domainsse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainsse domainsse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainsse domainsse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT scopparse.o -MD -MP -MF .deps/scopparse.Tpo -c -o scopparse.o scopparse.c mv -f .deps/scopparse.Tpo .deps/scopparse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o scopparse scopparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o scopparse scopparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ssematch.o -MD -MP -MF .deps/ssematch.Tpo -c -o ssematch.o ssematch.c mv -f .deps/ssematch.Tpo .deps/ssematch.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ssematch ssematch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ssematch ssematch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c cathparse domainnr domainreso domainseqs domainsse scopparse ssematch '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c cathparse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/cathparse libtool: install: /usr/bin/ginstall -c domainnr /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainnr libtool: install: /usr/bin/ginstall -c domainreso /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainreso libtool: install: /usr/bin/ginstall -c domainseqs /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainseqs libtool: install: /usr/bin/ginstall -c domainsse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainsse libtool: install: /usr/bin/ginstall -c scopparse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/scopparse libtool: install: /usr/bin/ginstall -c ssematch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ssematch make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 cathparse.acd domainnr.acd domainreso.acd domainseqs.acd domainsse.acd scopparse.acd ssematch.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domainatrix' /usr/bin/ginstall -c -m 644 index.html cathparse.html domainnr.html domainreso.html domainseqs.html domainsse.html scopparse.html ssematch.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domainatrix' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 cathparse.txt domainnr.txt domainreso.txt domainseqs.txt domainsse.txt scopparse.txt ssematch.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMAINATRIX-0.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT allversusall.o -MD -MP -MF .deps/allversusall.Tpo -c -o allversusall.o allversusall.c mv -f .deps/allversusall.Tpo .deps/allversusall.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o allversusall allversusall.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o allversusall allversusall.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainalign.o -MD -MP -MF .deps/domainalign.Tpo -c -o domainalign.o domainalign.c mv -f .deps/domainalign.Tpo .deps/domainalign.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainalign domainalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainalign domainalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainrep.o -MD -MP -MF .deps/domainrep.Tpo -c -o domainrep.o domainrep.c mv -f .deps/domainrep.Tpo .deps/domainrep.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainrep domainrep.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainrep domainrep.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqalign.o -MD -MP -MF .deps/seqalign.Tpo -c -o seqalign.o seqalign.c mv -f .deps/seqalign.Tpo .deps/seqalign.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqalign seqalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqalign seqalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c allversusall domainalign domainrep seqalign '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c allversusall /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/allversusall libtool: install: /usr/bin/ginstall -c domainalign /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainalign libtool: install: /usr/bin/ginstall -c domainrep /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainrep libtool: install: /usr/bin/ginstall -c seqalign /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqalign make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 allversusall.acd domainalign.acd domainrep.acd seqalign.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domalign' /usr/bin/ginstall -c -m 644 index.html allversusall.html domainalign.html domainrep.html seqalign.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domalign' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 allversusall.txt domainalign.txt domainrep.txt seqalign.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMALIGN-0.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqnr.o -MD -MP -MF .deps/seqnr.Tpo -c -o seqnr.o seqnr.c mv -f .deps/seqnr.Tpo .deps/seqnr.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqnr seqnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqnr seqnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqsearch.o -MD -MP -MF .deps/seqsearch.Tpo -c -o seqsearch.o seqsearch.c mv -f .deps/seqsearch.Tpo .deps/seqsearch.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqsearch seqsearch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqsearch seqsearch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqfraggle.o -MD -MP -MF .deps/seqfraggle.Tpo -c -o seqfraggle.o seqfraggle.c mv -f .deps/seqfraggle.Tpo .deps/seqfraggle.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqfraggle seqfraggle.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqfraggle seqfraggle.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqsort.o -MD -MP -MF .deps/seqsort.Tpo -c -o seqsort.o seqsort.c mv -f .deps/seqsort.Tpo .deps/seqsort.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqsort seqsort.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqsort seqsort.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqwords.o -MD -MP -MF .deps/seqwords.Tpo -c -o seqwords.o seqwords.c mv -f .deps/seqwords.Tpo .deps/seqwords.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o seqwords seqwords.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o seqwords seqwords.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c seqnr seqsearch seqfraggle seqsort seqwords '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c seqnr /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqnr libtool: install: /usr/bin/ginstall -c seqsearch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqsearch libtool: install: /usr/bin/ginstall -c seqfraggle /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqfraggle libtool: install: /usr/bin/ginstall -c seqsort /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqsort libtool: install: /usr/bin/ginstall -c seqwords /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/seqwords make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 seqnr.acd seqsearch.acd seqfraggle.acd seqsort.acd seqwords.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domsearch' /usr/bin/ginstall -c -m 644 index.html seqfraggle.html seqnr.html seqsearch.html seqsort.html seqwords.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/domsearch' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 seqfraggle.txt seqnr.txt seqsearch.txt seqsort.txt seqwords.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/DOMSEARCH-0.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for curses... checking for main in -lncurses... yes checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT emnu.o -MD -MP -MF .deps/emnu.Tpo -c -o emnu.o emnu.c mv -f .deps/emnu.Tpo .deps/emnu.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o emnu emnu.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lmenu -lform -lX11 -lm -lgd -lpng -lz -lm -lncurses libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o emnu emnu.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lmenu -lform -lX11 -lgd -lpng -lz -lm -lncurses make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c emnu '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c emnu /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/emnu make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 emnu.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/emnu' /usr/bin/ginstall -c -m 644 index.html emnu.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/emnu' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 emnu.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/EMNU-1.05.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT align.o -MD -MP -MF .deps/align.Tpo -c -o align.o align.c mv -f .deps/align.Tpo .deps/align.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT charvec.o -MD -MP -MF .deps/charvec.Tpo -c -o charvec.o charvec.c mv -f .deps/charvec.Tpo .deps/charvec.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT dna.o -MD -MP -MF .deps/dna.Tpo -c -o dna.o dna.c mv -f .deps/dna.Tpo .deps/dna.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT misc.o -MD -MP -MF .deps/misc.Tpo -c -o misc.o misc.c mv -f .deps/misc.Tpo .deps/misc.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT prnt.o -MD -MP -MF .deps/prnt.Tpo -c -o prnt.o prnt.c mv -f .deps/prnt.Tpo .deps/prnt.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT seq_read.o -MD -MP -MF .deps/seq_read.Tpo -c -o seq_read.o seq_read.c mv -f .deps/seq_read.Tpo .deps/seq_read.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT sim4b1.o -MD -MP -MF .deps/sim4b1.Tpo -c -o sim4b1.o sim4b1.c mv -f .deps/sim4b1.Tpo .deps/sim4b1.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT Xtend1.o -MD -MP -MF .deps/Xtend1.Tpo -c -o Xtend1.o Xtend1.c mv -f .deps/Xtend1.Tpo .deps/Xtend1.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT args.o -MD -MP -MF .deps/args.Tpo -c -o args.o args.c mv -f .deps/args.Tpo .deps/args.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT discrim.o -MD -MP -MF .deps/discrim.Tpo -c -o discrim.o discrim.c mv -f .deps/discrim.Tpo .deps/discrim.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT encoding.o -MD -MP -MF .deps/encoding.Tpo -c -o encoding.o encoding.c mv -f .deps/encoding.Tpo .deps/encoding.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT poly.o -MD -MP -MF .deps/poly.Tpo -c -o poly.o poly.c mv -f .deps/poly.Tpo .deps/poly.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT seq.o -MD -MP -MF .deps/seq.Tpo -c -o seq.o seq.c mv -f .deps/seq.Tpo .deps/seq.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT sim4.init.o -MD -MP -MF .deps/sim4.init.Tpo -c -o sim4.init.o sim4.init.c mv -f .deps/sim4.init.Tpo .deps/sim4.init.Po gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -MT splice.o -MD -MP -MF .deps/splice.Tpo -c -o splice.o splice.c mv -f .deps/splice.Tpo .deps/splice.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -o esim4 align.o charvec.o dna.o misc.o prnt.o seq_read.o sim4b1.o Xtend1.o args.o discrim.o encoding.o poly.o seq.o sim4.init.o splice.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -DEMBASSY -o esim4 align.o charvec.o dna.o misc.o prnt.o seq_read.o sim4b1.o Xtend1.o args.o discrim.o encoding.o poly.o seq.o sim4.init.o splice.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c esim4 '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c esim4 /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/esim4 make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 esim4.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/esim4' /usr/bin/ginstall -c -m 644 index.html esim4.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/esim4' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 esim4.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/ESIM4-1.0.0.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmcalibrate.o -MD -MP -MF .deps/ehmmcalibrate.Tpo -c -o ehmmcalibrate.o ehmmcalibrate.c mv -f .deps/ehmmcalibrate.Tpo .deps/ehmmcalibrate.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmcalibrate ehmmcalibrate.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmcalibrate ehmmcalibrate.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmconvert.o -MD -MP -MF .deps/ehmmconvert.Tpo -c -o ehmmconvert.o ehmmconvert.c mv -f .deps/ehmmconvert.Tpo .deps/ehmmconvert.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmconvert ehmmconvert.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmconvert ehmmconvert.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmemit.o -MD -MP -MF .deps/ehmmemit.Tpo -c -o ehmmemit.o ehmmemit.c mv -f .deps/ehmmemit.Tpo .deps/ehmmemit.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmemit ehmmemit.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmemit ehmmemit.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmfetch.o -MD -MP -MF .deps/ehmmfetch.Tpo -c -o ehmmfetch.o ehmmfetch.c mv -f .deps/ehmmfetch.Tpo .deps/ehmmfetch.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmfetch ehmmfetch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmfetch ehmmfetch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmindex.o -MD -MP -MF .deps/ehmmindex.Tpo -c -o ehmmindex.o ehmmindex.c mv -f .deps/ehmmindex.Tpo .deps/ehmmindex.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmindex ehmmindex.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmindex ehmmindex.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmbuild.o -MD -MP -MF .deps/ehmmbuild.Tpo -c -o ehmmbuild.o ehmmbuild.c mv -f .deps/ehmmbuild.Tpo .deps/ehmmbuild.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmbuild ehmmbuild.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmbuild ehmmbuild.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmalign.o -MD -MP -MF .deps/ehmmalign.Tpo -c -o ehmmalign.o ehmmalign.c mv -f .deps/ehmmalign.Tpo .deps/ehmmalign.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmalign ehmmalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmalign ehmmalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmpfam.o -MD -MP -MF .deps/ehmmpfam.Tpo -c -o ehmmpfam.o ehmmpfam.c mv -f .deps/ehmmpfam.Tpo .deps/ehmmpfam.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmpfam ehmmpfam.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmpfam ehmmpfam.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ehmmsearch.o -MD -MP -MF .deps/ehmmsearch.Tpo -c -o ehmmsearch.o ehmmsearch.c mv -f .deps/ehmmsearch.Tpo .deps/ehmmsearch.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmsearch ehmmsearch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ehmmsearch ehmmsearch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c ehmmcalibrate ehmmconvert ehmmemit ehmmfetch ehmmindex ehmmbuild ehmmalign ehmmpfam ehmmsearch '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c ehmmcalibrate /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmcalibrate libtool: install: /usr/bin/ginstall -c ehmmconvert /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmconvert libtool: install: /usr/bin/ginstall -c ehmmemit /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmemit libtool: install: /usr/bin/ginstall -c ehmmfetch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmfetch libtool: install: /usr/bin/ginstall -c ehmmindex /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmindex libtool: install: /usr/bin/ginstall -c ehmmbuild /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmbuild libtool: install: /usr/bin/ginstall -c ehmmalign /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmalign libtool: install: /usr/bin/ginstall -c ehmmpfam /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmpfam libtool: install: /usr/bin/ginstall -c ehmmsearch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ehmmsearch make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 ehmmcalibrate.acd ehmmconvert.acd ehmmemit.acd ehmmfetch.acd ehmmindex.acd ehmmbuild.acd ehmmalign.acd ehmmpfam.acd ehmmsearch.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/hmmernew' /usr/bin/ginstall -c -m 644 index.html ehmmalign.html ehmmbuild.html ehmmcalibrate.html ehmmconvert.html ehmmemit.html ehmmfetch.html ehmmindex.html ehmmpfam.html ehmmsearch.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/hmmernew' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 ehmmalign.txt ehmmbuild.txt ehmmcalibrate.txt ehmmconvert.txt ehmmemit.txt ehmmfetch.txt ehmmindex.txt ehmmpfam.txt ehmmsearch.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/HMMER-2.3.2.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT eiprscan.o -MD -MP -MF .deps/eiprscan.Tpo -c -o eiprscan.o eiprscan.c mv -f .deps/eiprscan.Tpo .deps/eiprscan.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o eiprscan eiprscan.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o eiprscan eiprscan.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c eiprscan '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c eiprscan /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/eiprscan make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 eiprscan.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/iprscan' /usr/bin/ginstall -c -m 644 index.html eiprscan.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/iprscan' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 eiprscan.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/IPRSCAN-4.3.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT emast.o -MD -MP -MF .deps/emast.Tpo -c -o emast.o emast.c mv -f .deps/emast.Tpo .deps/emast.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o emast emast.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o emast emast.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ememe.o -MD -MP -MF .deps/ememe.Tpo -c -o ememe.o ememe.c mv -f .deps/ememe.Tpo .deps/ememe.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ememe ememe.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ememe ememe.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ememetext.o -MD -MP -MF .deps/ememetext.Tpo -c -o ememetext.o ememetext.c mv -f .deps/ememetext.Tpo .deps/ememetext.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o ememetext ememetext.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o ememetext ememetext.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c emast ememe ememetext '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c emast /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/emast libtool: install: /usr/bin/ginstall -c ememe /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ememe libtool: install: /usr/bin/ginstall -c ememetext /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ememetext make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 emast.acd ememe.acd ememetext.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/memenew' /usr/bin/ginstall -c -m 644 index.html emast.html ememe.html ememetext.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/memenew' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 emast.txt ememe.txt ememetext.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MEME-4.7.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed 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GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking for main in -lncurses... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating h/Makefile config.status: creating ckit/Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in ckit make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT datafiles.lo -MD -MP -MF .deps/datafiles.Tpo -c -o datafiles.lo datafiles.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT datafiles.lo -MD -MP -MF .deps/datafiles.Tpo -c datafiles.c -fPIC -DPIC -o .libs/datafiles.o datafiles.c: In function 'ShowGCGEnzymes': datafiles.c:226:17: warning: 'fgets' writing 511 bytes into a region of size 256 overflows the destination [-Wstringop-overflow=] 226 | while ( fgets(line,511,enzFile) != NULL) | ^~~~~~~~~~~~~~~~~~~~~~~ datafiles.c:214:6: note: destination object 'line' of size 256 214 | char line[256]; | ^~~~ In file included from datafiles.c:6: /usr/include/stdio.h:568:14: note: in a call to function 'fgets' declared with attribute 'access (write_only, 1, 2)' 568 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ datafiles.c:232:17: warning: 'fgets' writing 511 bytes into a region of size 256 overflows the destination [-Wstringop-overflow=] 232 | while ( fgets(line,511,enzFile) != NULL ) { | ^~~~~~~~~~~~~~~~~~~~~~~ datafiles.c:214:6: note: destination object 'line' of size 256 214 | char line[256]; | ^~~~ In file included from datafiles.c:6: /usr/include/stdio.h:568:14: note: in a call to function 'fgets' declared with attribute 'access (write_only, 1, 2)' 568 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT datafiles.lo -MD -MP -MF .deps/datafiles.Tpo -c datafiles.c -o datafiles.o >/dev/null 2>&1 mv -f .deps/datafiles.Tpo .deps/datafiles.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT next.lo -MD -MP -MF .deps/next.Tpo -c -o next.lo next.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT next.lo -MD -MP -MF .deps/next.Tpo -c next.c -fPIC -DPIC -o .libs/next.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT next.lo -MD -MP -MF .deps/next.Tpo -c next.c -o next.o >/dev/null 2>&1 mv -f .deps/next.Tpo .deps/next.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqentry.lo -MD -MP -MF .deps/seqentry.Tpo -c -o seqentry.lo seqentry.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqentry.lo -MD -MP -MF .deps/seqentry.Tpo -c seqentry.c -fPIC -DPIC -o .libs/seqentry.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqentry.lo -MD -MP -MF .deps/seqentry.Tpo -c seqentry.c -o seqentry.o >/dev/null 2>&1 mv -f .deps/seqentry.Tpo .deps/seqentry.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT strings.lo -MD -MP -MF .deps/strings.Tpo -c -o strings.lo strings.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT strings.lo -MD -MP -MF .deps/strings.Tpo -c strings.c -fPIC -DPIC -o .libs/strings.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT strings.lo -MD -MP -MF .deps/strings.Tpo -c strings.c -o strings.o >/dev/null 2>&1 mv -f .deps/strings.Tpo .deps/strings.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT gcg.lo -MD -MP -MF .deps/gcg.Tpo -c -o gcg.lo gcg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT gcg.lo -MD -MP -MF .deps/gcg.Tpo -c gcg.c -fPIC -DPIC -o .libs/gcg.o gcg.c: In function 'NextGCGCode': gcg.c:175:14: warning: 'fgets' writing 39 bytes into a region of size 20 overflows the destination [-Wstringop-overflow=] 175 | if ( fgets(code, 39, namesFile) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcg.c:168:13: note: destination object 'code' of size 20 168 | static char code[20]; | ^~~~ In file included from gcg.c:10: /usr/include/stdio.h:568:14: note: in a call to function 'fgets' declared with attribute 'access (write_only, 1, 2)' 568 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT gcg.lo -MD -MP -MF .deps/gcg.Tpo -c gcg.c -o gcg.o >/dev/null 2>&1 mv -f .deps/gcg.Tpo .deps/gcg.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pir.lo -MD -MP -MF .deps/pir.Tpo -c -o pir.lo pir.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pir.lo -MD -MP -MF .deps/pir.Tpo -c pir.c -fPIC -DPIC -o .libs/pir.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pir.lo -MD -MP -MF .deps/pir.Tpo -c pir.c -o pir.o >/dev/null 2>&1 mv -f .deps/pir.Tpo .deps/pir.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqspec.lo -MD -MP -MF .deps/seqspec.Tpo -c -o seqspec.lo seqspec.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqspec.lo -MD -MP -MF .deps/seqspec.Tpo -c seqspec.c -fPIC -DPIC -o .libs/seqspec.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT seqspec.lo -MD -MP -MF .deps/seqspec.Tpo -c seqspec.c -o seqspec.o >/dev/null 2>&1 mv -f .deps/seqspec.Tpo .deps/seqspec.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ttyinterface.lo -MD -MP -MF .deps/ttyinterface.Tpo -c -o ttyinterface.lo ttyinterface.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ttyinterface.lo -MD -MP -MF .deps/ttyinterface.Tpo -c ttyinterface.c -fPIC -DPIC -o .libs/ttyinterface.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT ttyinterface.lo -MD -MP -MF .deps/ttyinterface.Tpo -c ttyinterface.c -o ttyinterface.o >/dev/null 2>&1 mv -f .deps/ttyinterface.Tpo .deps/ttyinterface.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT nextseqentry.lo -MD -MP -MF .deps/nextseqentry.Tpo -c -o nextseqentry.lo nextseqentry.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT nextseqentry.lo -MD -MP -MF .deps/nextseqentry.Tpo -c nextseqentry.c -fPIC -DPIC -o .libs/nextseqentry.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT nextseqentry.lo -MD -MP -MF .deps/nextseqentry.Tpo -c nextseqentry.c -o nextseqentry.o >/dev/null 2>&1 mv -f .deps/nextseqentry.Tpo .deps/nextseqentry.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT readentry.lo -MD -MP -MF .deps/readentry.Tpo -c -o readentry.lo readentry.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT readentry.lo -MD -MP -MF .deps/readentry.Tpo -c readentry.c -fPIC -DPIC -o .libs/readentry.o In function 'FindSeqSpec', inlined from 'ReadEntry' at readentry.c:101:7: readentry.c:413:15: warning: 'fgets' writing 512 bytes into a region of size 256 overflows the destination [-Wstringop-overflow=] 413 | fgets(title, 512, seqFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ readentry.c: In function 'ReadEntry': readentry.c:346:13: note: destination object 'title' of size 256 346 | static char title[256] = ""; | ^~~~~ In file included from readentry.c:18: /usr/include/stdio.h:568:14: note: in a call to function 'fgets' declared with attribute 'access (write_only, 1, 2)' 568 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT readentry.lo -MD -MP -MF .deps/readentry.Tpo -c readentry.c -o readentry.o >/dev/null 2>&1 mv -f .deps/readentry.Tpo .deps/readentry.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c -o sequence.lo sequence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -fPIC -DPIC -o .libs/sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -o sequence.o >/dev/null 2>&1 mv -f .deps/sequence.Tpo .deps/sequence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vdb.lo -MD -MP -MF .deps/vdb.Tpo -c -o vdb.lo vdb.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vdb.lo -MD -MP -MF .deps/vdb.Tpo -c vdb.c -fPIC -DPIC -o .libs/vdb.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vdb.lo -MD -MP -MF .deps/vdb.Tpo -c vdb.c -o vdb.o >/dev/null 2>&1 mv -f .deps/vdb.Tpo .deps/vdb.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vms2.lo -MD -MP -MF .deps/vms2.Tpo -c -o vms2.lo vms2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vms2.lo -MD -MP -MF .deps/vms2.Tpo -c vms2.c -fPIC -DPIC -o .libs/vms2.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../src -I../h -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT vms2.lo -MD -MP -MF .deps/vms2.Tpo -c vms2.c -o vms2.o >/dev/null 2>&1 mv -f .deps/vms2.Tpo .deps/vms2.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -version-info 1:0:1 -o libckit.la -rpath /usr/lib datafiles.lo next.lo seqentry.lo strings.lo gcg.lo pir.lo seqspec.lo ttyinterface.lo nextseqentry.lo readentry.lo sequence.lo vdb.lo vms2.lo -lm -lgd -lpng -lz -lm -lncurses libtool: link: gcc -shared -fPIC -DPIC .libs/datafiles.o .libs/next.o .libs/seqentry.o .libs/strings.o .libs/gcg.o .libs/pir.o .libs/seqspec.o .libs/ttyinterface.o .libs/nextseqentry.o .libs/readentry.o .libs/sequence.o .libs/vdb.o .libs/vms2.o -lgd -lpng -lz -lm -lncurses -O2 -march=i586 -mtune=i686 -O2 -Wl,-soname -Wl,libckit.so.0 -o .libs/libckit.so.0.1.0 libtool: link: (cd ".libs" && rm -f "libckit.so.0" && ln -s "libckit.so.0.1.0" "libckit.so.0") libtool: link: (cd ".libs" && rm -f "libckit.so" && ln -s "libckit.so.0.1.0" "libckit.so") libtool: link: ar cru .libs/libckit.a datafiles.o next.o seqentry.o strings.o gcg.o pir.o seqspec.o ttyinterface.o nextseqentry.o readentry.o sequence.o vdb.o vms2.o libtool: link: ranlib .libs/libckit.a libtool: link: ( cd ".libs" && rm -f "libckit.la" && ln -s "../libckit.la" "libckit.la" ) make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' gcc -DHAVE_CONFIG_H -I. -I../h -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -I/usr/include/ezlib -I/usr/include/eexpat -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT mse.o -MD -MP -MF .deps/mse.Tpo -c -o mse.o mse.c mv -f .deps/mse.Tpo .deps/mse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o mse mse.o ../ckit/libckit.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm -lncurses libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o .libs/mse mse.o ../ckit/.libs/libckit.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm -lncurses make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' Making all in h make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' Making install in ckit make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c libckit.la '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/libckit.so.0.1.0 /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/libckit.so.0.1.0 libtool: install: (cd /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib && { ln -s -f libckit.so.0.1.0 libckit.so.0 || { rm -f libckit.so.0 && ln -s libckit.so.0.1.0 libckit.so.0; }; }) libtool: install: (cd /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib && { ln -s -f libckit.so.0.1.0 libckit.so || { rm -f libckit.so && ln -s libckit.so.0.1.0 libckit.so; }; }) libtool: install: /usr/bin/ginstall -c .libs/libckit.lai /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/libckit.la libtool: install: /usr/bin/ginstall -c .libs/libckit.a /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/libckit.a libtool: install: chmod 644 /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/libckit.a libtool: install: ranlib /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/libckit.a libtool: install: warning: remember to run `libtool --finish /usr/lib' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/ckit' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c mse '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: warning: `../ckit/libckit.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/mse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/mse make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/src' Making install in h make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/h' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 mse.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/mse' /usr/bin/ginstall -c -m 644 index.html mse.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/mse' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 mse.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MSE-3.0.0.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/myemboss' /usr/bin/ginstall -c -m 644 index.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/myemboss' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSS-6.5.1' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/myembossdemo' /usr/bin/ginstall -c -m 644 index.html demoalign.html demofeatures.html demolist.html demoreport.html demosequence.html demostring.html demostringnew.html demotable.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/myembossdemo' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 demoalign.txt demofeatures.txt demolist.txt demoreport.txt demosequence.txt demostring.txt demostringnew.txt demotable.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/MYEMBOSSDEMO-6.5.0' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... 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(cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking X11/Xaw/Label.h usability... yes checking X11/Xaw/Label.h presence... yes checking for X11/Xaw/Label.h... yes checking for XawInitializeWidgetSet in -lXaw... yes checking for XtToolkitInitialize in -lXt... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT clique.o -MD -MP -MF .deps/clique.Tpo -c -o clique.o clique.c mv -f .deps/clique.Tpo .deps/clique.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT disc.o -MD -MP -MF .deps/disc.Tpo -c -o disc.o disc.c mv -f .deps/disc.Tpo .deps/disc.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT phylip.o -MD -MP -MF .deps/phylip.Tpo -c -o phylip.o phylip.c mv -f .deps/phylip.Tpo .deps/phylip.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT consense.o -MD -MP -MF .deps/consense.Tpo -c -o consense.o consense.c mv -f .deps/consense.Tpo .deps/consense.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT cons.o -MD -MP -MF .deps/cons.Tpo -c -o cons.o cons.c mv -f .deps/cons.Tpo .deps/cons.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT contml.o -MD -MP -MF .deps/contml.Tpo -c -o contml.o contml.c mv -f .deps/contml.Tpo .deps/contml.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT cont.o -MD -MP -MF .deps/cont.Tpo -c -o cont.o cont.c mv -f .deps/cont.Tpo .deps/cont.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT contrast.o -MD -MP -MF .deps/contrast.Tpo -c -o contrast.o contrast.c mv -f .deps/contrast.Tpo .deps/contrast.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fcontrast contrast.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fcontrast contrast.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnacomp.o -MD -MP -MF .deps/dnacomp.Tpo -c -o dnacomp.o dnacomp.c mv -f .deps/dnacomp.Tpo .deps/dnacomp.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT seq.o -MD -MP -MF .deps/seq.Tpo -c -o seq.o seq.c mv -f .deps/seq.Tpo .deps/seq.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnadist.o -MD -MP -MF .deps/dnadist.Tpo -c -o dnadist.o dnadist.c mv -f .deps/dnadist.Tpo .deps/dnadist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnainvar.o -MD -MP -MF .deps/dnainvar.Tpo -c -o dnainvar.o dnainvar.c mv -f .deps/dnainvar.Tpo .deps/dnainvar.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnaml.o -MD -MP -MF .deps/dnaml.Tpo -c -o dnaml.o dnaml.c mv -f .deps/dnaml.Tpo .deps/dnaml.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnamlk.o -MD -MP -MF .deps/dnamlk.Tpo -c -o dnamlk.o dnamlk.c mv -f .deps/dnamlk.Tpo .deps/dnamlk.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT printree.o -MD -MP -MF .deps/printree.Tpo -c -o printree.o printree.c mv -f .deps/printree.Tpo .deps/printree.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT mlclock.o -MD -MP -MF .deps/mlclock.Tpo -c -o mlclock.o mlclock.c mv -f .deps/mlclock.Tpo .deps/mlclock.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnamove.o -MD -MP -MF .deps/dnamove.Tpo -c -o dnamove.o dnamove.c mv -f .deps/dnamove.Tpo .deps/dnamove.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT moves.o -MD -MP -MF .deps/moves.Tpo -c -o moves.o moves.c mv -f .deps/moves.Tpo .deps/moves.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnapars.o -MD -MP -MF .deps/dnapars.Tpo -c -o dnapars.o dnapars.c mv -f .deps/dnapars.Tpo .deps/dnapars.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dnapenny.o -MD -MP -MF .deps/dnapenny.Tpo -c -o dnapenny.o dnapenny.c mv -f .deps/dnapenny.Tpo .deps/dnapenny.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dolmove.o -MD -MP -MF .deps/dolmove.Tpo -c -o dolmove.o dolmove.c mv -f .deps/dolmove.Tpo .deps/dolmove.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dollo.o -MD -MP -MF .deps/dollo.Tpo -c -o dollo.o dollo.c mv -f .deps/dollo.Tpo .deps/dollo.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dollop.o -MD -MP -MF .deps/dollop.Tpo -c -o dollop.o dollop.c mv -f .deps/dollop.Tpo .deps/dollop.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dolpenny.o -MD -MP -MF .deps/dolpenny.Tpo -c -o dolpenny.o dolpenny.c mv -f .deps/dolpenny.Tpo .deps/dolpenny.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT drawgram.o -MD -MP -MF .deps/drawgram.Tpo -c -o drawgram.o drawgram.c mv -f .deps/drawgram.Tpo .deps/drawgram.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT draw.o -MD -MP -MF .deps/draw.Tpo -c -o draw.o draw.c draw.c: In function ‘metricforfont’: draw.c:2619:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2619 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2618:22: note: within this loop 2618 | for (i=31;i<256;++i) | ~^~~~ draw.c:2576:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2576 | fontmetric[i-31] = timesbolditalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2575:16: note: within this loop 2575 | for (i=31;i<256;++i) | ~^~~~ draw.c:2573:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2573 | fontmetric[i-31] = timesbold_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2572:16: note: within this loop 2572 | for (i=31;i<256;++i) | ~^~~~ draw.c:2570:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2570 | fontmetric[i-31] = timesitalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2569:16: note: within this loop 2569 | for (i=31;i<256;++i) | ~^~~~ draw.c:2567:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2567 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2566:16: note: within this loop 2566 | for (i=31;i<256;++i) | ~^~~~ draw.c:2564:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2564 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2563:16: note: within this loop 2563 | for (i=31;i<256;++i) | ~^~~~ draw.c:2561:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2561 | fontmetric[i-31] = helveticabold_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2560:16: note: within this loop 2560 | for (i=31;i<256;++i) | ~^~~~ draw.c:2557:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] 2557 | fontmetric[i-31] = helvetica_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2556:16: note: within this loop 2556 | for (i=31;i<256;++i) | ~^~~~ draw.c:2619:30: warning: ‘__builtin_memcpy’ reading 450 bytes from a region of size 448 [-Wstringop-overread] 2619 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ draw.c:118:14: note: source object ‘timesroman_metric’ of size 448 118 | static short timesroman_metric[] = {662, | ^~~~~~~~~~~~~~~~~ draw.c:2620:34: warning: ‘__builtin_memcpy’ reading 450 bytes from a region of size 448 [-Wstringop-overread] 2620 | unknown_metric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ draw.c:118:14: note: source object ‘timesroman_metric’ of size 448 118 | static short timesroman_metric[] = {662, | ^~~~~~~~~~~~~~~~~ mv -f .deps/draw.Tpo .deps/draw.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT draw2.o -MD -MP -MF .deps/draw2.Tpo -c -o draw2.o draw2.c mv -f .deps/draw2.Tpo .deps/draw2.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT drawtree.o -MD -MP -MF .deps/drawtree.Tpo -c -o drawtree.o drawtree.c mv -f .deps/drawtree.Tpo .deps/drawtree.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT factor.o -MD -MP -MF .deps/factor.Tpo -c -o factor.o factor.c mv -f .deps/factor.Tpo .deps/factor.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffactor factor.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffactor factor.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT fitch.o -MD -MP -MF .deps/fitch.Tpo -c -o fitch.o fitch.c mv -f .deps/fitch.Tpo .deps/fitch.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT dist.o -MD -MP -MF .deps/dist.Tpo -c -o dist.o dist.c mv -f .deps/dist.Tpo .deps/dist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffitch fitch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffitch fitch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT gendist.o -MD -MP -MF .deps/gendist.Tpo -c -o gendist.o gendist.c mv -f .deps/gendist.Tpo .deps/gendist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fgendist gendist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fgendist gendist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT kitsch.o -MD -MP -MF .deps/kitsch.Tpo -c -o kitsch.o kitsch.c mv -f .deps/kitsch.Tpo .deps/kitsch.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT mix.o -MD -MP -MF .deps/mix.Tpo -c -o mix.o mix.c mv -f .deps/mix.Tpo .deps/mix.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT wagner.o -MD -MP -MF .deps/wagner.Tpo -c -o wagner.o wagner.c mv -f .deps/wagner.Tpo .deps/wagner.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT move.o -MD -MP -MF .deps/move.Tpo -c -o move.o move.c mv -f .deps/move.Tpo .deps/move.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT neighbor.o -MD -MP -MF .deps/neighbor.Tpo -c -o neighbor.o neighbor.c mv -f .deps/neighbor.Tpo .deps/neighbor.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT pars.o -MD -MP -MF .deps/pars.Tpo -c -o pars.o pars.c mv -f .deps/pars.Tpo .deps/pars.Po gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT discrete.o -MD -MP -MF .deps/discrete.Tpo -c -o discrete.o discrete.c mv -f .deps/discrete.Tpo .deps/discrete.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpars pars.o discrete.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpars pars.o discrete.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT penny.o -MD -MP -MF .deps/penny.Tpo -c -o penny.o penny.c mv -f .deps/penny.Tpo .deps/penny.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT proml.o -MD -MP -MF .deps/proml.Tpo -c -o proml.o proml.c mv -f .deps/proml.Tpo .deps/proml.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fproml proml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fproml proml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT promlk.o -MD -MP -MF .deps/promlk.Tpo -c -o promlk.o promlk.c mv -f .deps/promlk.Tpo .deps/promlk.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT protdist.o -MD -MP -MF .deps/protdist.Tpo -c -o protdist.o protdist.c mv -f .deps/protdist.Tpo .deps/protdist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fprotdist protdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fprotdist protdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT protpars.o -MD -MP -MF .deps/protpars.Tpo -c -o protpars.o protpars.c mv -f .deps/protpars.Tpo .deps/protpars.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fprotpars protpars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fprotpars protpars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT restdist.o -MD -MP -MF .deps/restdist.Tpo -c -o restdist.o restdist.c mv -f .deps/restdist.Tpo .deps/restdist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestdist restdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestdist restdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT restml.o -MD -MP -MF .deps/restml.Tpo -c -o restml.o restml.c mv -f .deps/restml.Tpo .deps/restml.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestml restml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestml restml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT retree.o -MD -MP -MF .deps/retree.Tpo -c -o retree.o retree.c mv -f .deps/retree.Tpo .deps/retree.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fretree retree.o moves.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fretree retree.o moves.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT discboot.o -MD -MP -MF .deps/discboot.Tpo -c -o discboot.o discboot.c mv -f .deps/discboot.Tpo .deps/discboot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT freqboot.o -MD -MP -MF .deps/freqboot.Tpo -c -o freqboot.o freqboot.c mv -f .deps/freqboot.Tpo .deps/freqboot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT restboot.o -MD -MP -MF .deps/restboot.Tpo -c -o restboot.o restboot.c mv -f .deps/restboot.Tpo .deps/restboot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestboot restboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o frestboot restboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT seqboot.o -MD -MP -MF .deps/seqboot.Tpo -c -o seqboot.o seqboot.c mv -f .deps/seqboot.Tpo .deps/seqboot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT seqbootall.o -MD -MP -MF .deps/seqbootall.Tpo -c -o seqbootall.o seqbootall.c mv -f .deps/seqbootall.Tpo .deps/seqbootall.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT treedist.o -MD -MP -MF .deps/treedist.Tpo -c -o treedist.o treedist.c mv -f .deps/treedist.Tpo .deps/treedist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ftreedist treedist.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ftreedist treedist.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -fcommon -O2 -MT treedistpair.o -MD -MP -MF .deps/treedistpair.Tpo -c -o treedistpair.o treedistpair.c mv -f .deps/treedistpair.Tpo .deps/treedistpair.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -fcommon -O2 -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' Making all in data make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c fclique fconsense fcontml fcontrast fdnacomp fdnadist fdnainvar fdnaml fdnamlk fdnamove fdnapars fdnapenny fdolmove fdollop fdolpenny fdrawgram fdrawtree ffactor ffitch fgendist fkitsch fmix fmove fneighbor fpars fpenny fproml fpromlk fprotdist fprotpars frestdist frestml fretree fdiscboot ffreqboot frestboot fseqboot fseqbootall ftreedist ftreedistpair '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c fclique /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fclique libtool: install: /usr/bin/ginstall -c fconsense /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fconsense libtool: install: /usr/bin/ginstall -c fcontml /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fcontml libtool: install: /usr/bin/ginstall -c fcontrast /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fcontrast libtool: install: /usr/bin/ginstall -c fdnacomp /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnacomp libtool: install: /usr/bin/ginstall -c fdnadist /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnadist libtool: install: /usr/bin/ginstall -c fdnainvar /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnainvar libtool: install: /usr/bin/ginstall -c fdnaml /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnaml libtool: install: /usr/bin/ginstall -c fdnamlk /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnamlk libtool: install: /usr/bin/ginstall -c fdnamove /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnamove libtool: install: /usr/bin/ginstall -c fdnapars /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnapars libtool: install: /usr/bin/ginstall -c fdnapenny /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdnapenny libtool: install: /usr/bin/ginstall -c fdolmove /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdolmove libtool: install: /usr/bin/ginstall -c fdollop /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdollop libtool: install: /usr/bin/ginstall -c fdolpenny /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdolpenny libtool: install: /usr/bin/ginstall -c fdrawgram /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdrawgram libtool: install: /usr/bin/ginstall -c fdrawtree /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdrawtree libtool: install: /usr/bin/ginstall -c ffactor /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ffactor libtool: install: /usr/bin/ginstall -c ffitch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ffitch libtool: install: /usr/bin/ginstall -c fgendist /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fgendist libtool: install: /usr/bin/ginstall -c fkitsch /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fkitsch libtool: install: /usr/bin/ginstall -c fmix /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fmix libtool: install: /usr/bin/ginstall -c fmove /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fmove libtool: install: /usr/bin/ginstall -c fneighbor /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fneighbor libtool: install: /usr/bin/ginstall -c fpars /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fpars libtool: install: /usr/bin/ginstall -c fpenny /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fpenny libtool: install: /usr/bin/ginstall -c fproml /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fproml libtool: install: /usr/bin/ginstall -c fpromlk /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fpromlk libtool: install: /usr/bin/ginstall -c fprotdist /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fprotdist libtool: install: /usr/bin/ginstall -c fprotpars /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fprotpars libtool: install: /usr/bin/ginstall -c frestdist /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/frestdist libtool: install: /usr/bin/ginstall -c frestml /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/frestml libtool: install: /usr/bin/ginstall -c fretree /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fretree libtool: install: /usr/bin/ginstall -c fdiscboot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fdiscboot libtool: install: /usr/bin/ginstall -c ffreqboot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ffreqboot libtool: install: /usr/bin/ginstall -c frestboot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/frestboot libtool: install: /usr/bin/ginstall -c fseqboot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fseqboot libtool: install: /usr/bin/ginstall -c fseqbootall /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/fseqbootall libtool: install: /usr/bin/ginstall -c ftreedist /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ftreedist libtool: install: /usr/bin/ginstall -c ftreedistpair /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ftreedistpair make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 fclique.acd fconsense.acd fcontml.acd fcontrast.acd fdiscboot.acd fdnacomp.acd fdnadist.acd fdnainvar.acd fdnaml.acd fdnamlk.acd fdnamove.acd fdnapars.acd fdnapenny.acd fdollop.acd fdolmove.acd fdolpenny.acd fdrawgram.acd fdrawtree.acd ffactor.acd ffitch.acd ffreqboot.acd fgendist.acd fkitsch.acd fmix.acd fmove.acd fneighbor.acd fpars.acd fpenny.acd fproml.acd fpromlk.acd fprotdist.acd fprotpars.acd frestboot.acd frestdist.acd frestml.acd fretree.acd fseqboot.acd fseqbootall.acd ftreedist.acd ftreedistpair.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_acd' Making install in data make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/PHYLIPNEW/data/' /usr/bin/ginstall -c -m 644 font1 font2 font3 font4 font5 font6 '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/PHYLIPNEW/data/' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/data' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/phylipnew' /usr/bin/ginstall -c -m 644 index.html fclique.html fconsense.html fcontml.html fcontrast.html fdiscboot.html fdnacomp.html fdnadist.html fdnainvar.html fdnaml.html fdnamlk.html fdnamove.html fdnapars.html fdnapenny.html fdollop.html fdolmove.html fdolpenny.html fdrawgram.html fdrawtree.html ffactor.html ffitch.html ffreqboot.html fgendist.html fkitsch.html fmix.html fmove.html fneighbor.html fpars.html fpenny.html fproml.html fpromlk.html fprotdist.html fprotpars.html frestboot.html frestdist.html frestml.html fretree.html fseqboot.html fseqbootall.html ftreedist.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/phylipnew' /usr/bin/ginstall -c -m 644 ftreedistpair.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/phylipnew' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 fclique.txt fconsense.txt fcontml.txt fcontrast.txt fdiscboot.txt fdnacomp.txt fdnadist.txt fdnainvar.txt fdnaml.txt fdnamlk.txt fdnamove.txt fdnapars.txt fdnapenny.txt fdollop.txt fdolmove.txt fdolpenny.txt fdrawgram.txt fdrawtree.txt ffactor.txt ffitch.txt ffreqboot.txt fgendist.txt fkitsch.txt fmix.txt fmove.txt fneighbor.txt fpars.txt fpenny.txt fproml.txt fpromlk.txt fprotdist.txt fprotpars.txt frestboot.txt frestdist.txt frestml.txt fretree.txt fseqboot.txt fseqbootall.txt ftreedist.txt ftreedistpair.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/PHYLIPNEW-3.69.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT libgen.o -MD -MP -MF .deps/libgen.Tpo -c -o libgen.o libgen.c mv -f .deps/libgen.Tpo .deps/libgen.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o libgen libgen.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o libgen libgen.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT matgen3d.o -MD -MP -MF .deps/matgen3d.Tpo -c -o matgen3d.o matgen3d.c mv -f .deps/matgen3d.Tpo .deps/matgen3d.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o matgen3d matgen3d.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o matgen3d matgen3d.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT rocplot.o -MD -MP -MF .deps/rocplot.Tpo -c -o rocplot.o rocplot.c mv -f .deps/rocplot.Tpo .deps/rocplot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o rocplot rocplot.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o rocplot rocplot.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT rocon.o -MD -MP -MF .deps/rocon.Tpo -c -o rocon.o rocon.c mv -f .deps/rocon.Tpo .deps/rocon.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o rocon rocon.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o rocon rocon.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT siggen.o -MD -MP -MF .deps/siggen.Tpo -c -o siggen.o siggen.c mv -f .deps/siggen.Tpo .deps/siggen.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o siggen siggen.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o siggen siggen.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT siggenlig.o -MD -MP -MF .deps/siggenlig.Tpo -c -o siggenlig.o siggenlig.c mv -f .deps/siggenlig.Tpo .deps/siggenlig.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o siggenlig siggenlig.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o siggenlig siggenlig.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sigscan.o -MD -MP -MF .deps/sigscan.Tpo -c -o sigscan.o sigscan.c mv -f .deps/sigscan.Tpo .deps/sigscan.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o sigscan sigscan.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o sigscan sigscan.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sigscanlig.o -MD -MP -MF .deps/sigscanlig.Tpo -c -o sigscanlig.o sigscanlig.c mv -f .deps/sigscanlig.Tpo .deps/sigscanlig.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o sigscanlig sigscanlig.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o sigscanlig sigscanlig.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c libgen matgen3d rocplot rocon siggen siggenlig sigscan sigscanlig '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c libgen /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/libgen libtool: install: /usr/bin/ginstall -c matgen3d /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/matgen3d libtool: install: /usr/bin/ginstall -c rocplot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/rocplot libtool: install: /usr/bin/ginstall -c rocon /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/rocon libtool: install: /usr/bin/ginstall -c siggen /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/siggen libtool: install: /usr/bin/ginstall -c siggenlig /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/siggenlig libtool: install: /usr/bin/ginstall -c sigscan /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/sigscan libtool: install: /usr/bin/ginstall -c sigscanlig /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/sigscanlig make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 libgen.acd matgen3d.acd rocplot.acd rocon.acd siggen.acd siggenlig.acd sigscan.acd sigscanlig.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/signature' /usr/bin/ginstall -c -m 644 index.html libgen.html matgen3d.html rocon.html rocplot.html siggen.html siggenlig.html sigscan.html sigscanlig.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/signature' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 libgen.txt matgen3d.txt rocon.txt rocplot.txt siggen.txt siggenlig.txt sigscan.txt sigscanlig.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/SIGNATURE-0.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT contacts.o -MD -MP -MF .deps/contacts.Tpo -c -o contacts.o contacts.c mv -f .deps/contacts.Tpo .deps/contacts.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o contacts contacts.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o contacts contacts.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT domainer.o -MD -MP -MF .deps/domainer.Tpo -c -o domainer.o domainer.c mv -f .deps/domainer.Tpo .deps/domainer.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o domainer domainer.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o domainer domainer.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT hetparse.o -MD -MP -MF .deps/hetparse.Tpo -c -o hetparse.o hetparse.c mv -f .deps/hetparse.Tpo .deps/hetparse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o hetparse hetparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o hetparse hetparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c mv -f .deps/interface.Tpo .deps/interface.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o interface interface.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o interface interface.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pdbparse.o -MD -MP -MF .deps/pdbparse.Tpo -c -o pdbparse.o pdbparse.c mv -f .deps/pdbparse.Tpo .deps/pdbparse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbparse pdbparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbparse pdbparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pdbplus.o -MD -MP -MF .deps/pdbplus.Tpo -c -o pdbplus.o pdbplus.c mv -f .deps/pdbplus.Tpo .deps/pdbplus.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbplus pdbplus.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbplus pdbplus.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT pdbtosp.o -MD -MP -MF .deps/pdbtosp.Tpo -c -o pdbtosp.o pdbtosp.c mv -f .deps/pdbtosp.Tpo .deps/pdbtosp.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbtosp pdbtosp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o pdbtosp pdbtosp.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT sites.o -MD -MP -MF .deps/sites.Tpo -c -o sites.o sites.c mv -f .deps/sites.Tpo .deps/sites.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o sites sites.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o sites sites.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c contacts domainer hetparse interface pdbparse pdbplus pdbtosp sites '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c contacts /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/contacts libtool: install: /usr/bin/ginstall -c domainer /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/domainer libtool: install: /usr/bin/ginstall -c hetparse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/hetparse libtool: install: /usr/bin/ginstall -c interface /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/interface libtool: install: /usr/bin/ginstall -c pdbparse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/pdbparse libtool: install: /usr/bin/ginstall -c pdbplus /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/pdbplus libtool: install: /usr/bin/ginstall -c pdbtosp /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/pdbtosp libtool: install: /usr/bin/ginstall -c sites /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/sites make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 contacts.acd domainer.acd hetparse.acd interface.acd pdbparse.acd pdbplus.acd pdbtosp.acd sites.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/structure' /usr/bin/ginstall -c -m 644 index.html contacts.html domainer.html hetparse.html interface.html pdbparse.html pdbplus.html pdbtosp.html sites.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/structure' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 contacts.txt domainer.txt hetparse.txt interface.txt pdbparse.txt pdbplus.txt pdbtosp.txt sites.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/STRUCTURE-0.1.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -O2 -MT topo.o -MD -MP -MF .deps/topo.Tpo -c -o topo.o topo.c mv -f .deps/topo.Tpo .deps/topo.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -O2 -o topo topo.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -O2 -o topo topo.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c topo '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: /usr/bin/ginstall -c topo /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/topo make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 topo.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/topo' /usr/bin/ginstall -c -m 644 topo.1.topo.gif index.html topo.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/topo' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 topo.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/TOPO-2.0.650' checking for gawk... gawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-slackware-linux-gnu file names to i586-slackware-linux-gnu format... func_convert_file_noop checking how to convert i586-slackware-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT dist_vars.lo -MD -MP -MF .deps/dist_vars.Tpo -c -o dist_vars.lo dist_vars.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT dist_vars.lo -MD -MP -MF .deps/dist_vars.Tpo -c dist_vars.c -fPIC -DPIC -o .libs/dist_vars.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT dist_vars.lo -MD -MP -MF .deps/dist_vars.Tpo -c dist_vars.c -o dist_vars.o >/dev/null 2>&1 mv -f .deps/dist_vars.Tpo .deps/dist_vars.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold_vars.lo -MD -MP -MF .deps/fold_vars.Tpo -c -o fold_vars.lo fold_vars.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold_vars.lo -MD -MP -MF .deps/fold_vars.Tpo -c fold_vars.c -fPIC -DPIC -o .libs/fold_vars.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold_vars.lo -MD -MP -MF .deps/fold_vars.Tpo -c fold_vars.c -o fold_vars.o >/dev/null 2>&1 mv -f .deps/fold_vars.Tpo .deps/fold_vars.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func.lo -MD -MP -MF .deps/part_func.Tpo -c -o part_func.lo part_func.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func.lo -MD -MP -MF .deps/part_func.Tpo -c part_func.c -fPIC -DPIC -o .libs/part_func.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func.lo -MD -MP -MF .deps/part_func.Tpo -c part_func.c -o part_func.o >/dev/null 2>&1 mv -f .deps/part_func.Tpo .deps/part_func.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eread_epars.lo -MD -MP -MF .deps/eread_epars.Tpo -c -o eread_epars.lo eread_epars.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eread_epars.lo -MD -MP -MF .deps/eread_epars.Tpo -c eread_epars.c -fPIC -DPIC -o .libs/eread_epars.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eread_epars.lo -MD -MP -MF .deps/eread_epars.Tpo -c eread_epars.c -o eread_epars.o >/dev/null 2>&1 mv -f .deps/eread_epars.Tpo .deps/eread_epars.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT treedist.lo -MD -MP -MF .deps/treedist.Tpo -c -o treedist.lo treedist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT treedist.lo -MD -MP -MF .deps/treedist.Tpo -c treedist.c -fPIC -DPIC -o .libs/treedist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT treedist.lo -MD -MP -MF .deps/treedist.Tpo -c treedist.c -o treedist.o >/dev/null 2>&1 mv -f .deps/treedist.Tpo .deps/treedist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT energy_par.lo -MD -MP -MF .deps/energy_par.Tpo -c -o energy_par.lo energy_par.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT energy_par.lo -MD -MP -MF .deps/energy_par.Tpo -c energy_par.c -fPIC -DPIC -o .libs/energy_par.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT energy_par.lo -MD -MP -MF .deps/energy_par.Tpo -c energy_par.c -o energy_par.o >/dev/null 2>&1 mv -f .deps/energy_par.Tpo .deps/energy_par.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT inverse.lo -MD -MP -MF .deps/inverse.Tpo -c -o inverse.lo inverse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT inverse.lo -MD -MP -MF .deps/inverse.Tpo -c inverse.c -fPIC -DPIC -o .libs/inverse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT inverse.lo -MD -MP -MF .deps/inverse.Tpo -c inverse.c -o inverse.o >/dev/null 2>&1 mv -f .deps/inverse.Tpo .deps/inverse.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileDist.lo -MD -MP -MF .deps/ProfileDist.Tpo -c -o ProfileDist.lo ProfileDist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileDist.lo -MD -MP -MF .deps/ProfileDist.Tpo -c ProfileDist.c -fPIC -DPIC -o .libs/ProfileDist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileDist.lo -MD -MP -MF .deps/ProfileDist.Tpo -c ProfileDist.c -o ProfileDist.o >/dev/null 2>&1 mv -f .deps/ProfileDist.Tpo .deps/ProfileDist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT RNAstruct.lo -MD -MP -MF .deps/RNAstruct.Tpo -c -o RNAstruct.lo RNAstruct.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT RNAstruct.lo -MD -MP -MF .deps/RNAstruct.Tpo -c RNAstruct.c -fPIC -DPIC -o .libs/RNAstruct.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT RNAstruct.lo -MD -MP -MF .deps/RNAstruct.Tpo -c RNAstruct.c -o RNAstruct.o >/dev/null 2>&1 mv -f .deps/RNAstruct.Tpo .deps/RNAstruct.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o .libs/utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -o utils.o >/dev/null 2>&1 mv -f .deps/utils.Tpo .deps/utils.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold.lo -MD -MP -MF .deps/fold.Tpo -c -o fold.lo fold.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold.lo -MD -MP -MF .deps/fold.Tpo -c fold.c -fPIC -DPIC -o .libs/fold.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT fold.lo -MD -MP -MF .deps/fold.Tpo -c fold.c -o fold.o >/dev/null 2>&1 mv -f .deps/fold.Tpo .deps/fold.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT naview.lo -MD -MP -MF .deps/naview.Tpo -c -o naview.lo naview.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT naview.lo -MD -MP -MF .deps/naview.Tpo -c naview.c -fPIC -DPIC -o .libs/naview.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT naview.lo -MD -MP -MF .deps/naview.Tpo -c naview.c -o naview.o >/dev/null 2>&1 mv -f .deps/naview.Tpo .deps/naview.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ePS_dot.lo -MD -MP -MF .deps/ePS_dot.Tpo -c -o ePS_dot.lo ePS_dot.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ePS_dot.lo -MD -MP -MF .deps/ePS_dot.Tpo -c ePS_dot.c -fPIC -DPIC -o .libs/ePS_dot.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ePS_dot.lo -MD -MP -MF .deps/ePS_dot.Tpo -c ePS_dot.c -o ePS_dot.o >/dev/null 2>&1 mv -f .deps/ePS_dot.Tpo .deps/ePS_dot.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT stringdist.lo -MD -MP -MF .deps/stringdist.Tpo -c -o stringdist.lo stringdist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT stringdist.lo -MD -MP -MF .deps/stringdist.Tpo -c stringdist.c -fPIC -DPIC -o .libs/stringdist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT stringdist.lo -MD -MP -MF .deps/stringdist.Tpo -c stringdist.c -o stringdist.o >/dev/null 2>&1 mv -f .deps/stringdist.Tpo .deps/stringdist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT params.lo -MD -MP -MF .deps/params.Tpo -c -o params.lo params.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT params.lo -MD -MP -MF .deps/params.Tpo -c params.c -fPIC -DPIC -o .libs/params.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT params.lo -MD -MP -MF .deps/params.Tpo -c params.c -o params.o >/dev/null 2>&1 mv -f .deps/params.Tpo .deps/params.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT subopt.lo -MD -MP -MF .deps/subopt.Tpo -c -o subopt.lo subopt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT subopt.lo -MD -MP -MF .deps/subopt.Tpo -c subopt.c -fPIC -DPIC -o .libs/subopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT subopt.lo -MD -MP -MF .deps/subopt.Tpo -c subopt.c -o subopt.o >/dev/null 2>&1 mv -f .deps/subopt.Tpo .deps/subopt.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT list.lo -MD -MP -MF .deps/list.Tpo -c -o list.lo list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT list.lo -MD -MP -MF .deps/list.Tpo -c list.c -fPIC -DPIC -o .libs/list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT list.lo -MD -MP -MF .deps/list.Tpo -c list.c -o list.o >/dev/null 2>&1 mv -f .deps/list.Tpo .deps/list.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT cofold.lo -MD -MP -MF .deps/cofold.Tpo -c -o cofold.lo cofold.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT cofold.lo -MD -MP -MF .deps/cofold.Tpo -c cofold.c -fPIC -DPIC -o .libs/cofold.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT cofold.lo -MD -MP -MF .deps/cofold.Tpo -c cofold.c -o cofold.o >/dev/null 2>&1 mv -f .deps/cofold.Tpo .deps/cofold.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eLfold.lo -MD -MP -MF .deps/eLfold.Tpo -c -o eLfold.lo eLfold.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eLfold.lo -MD -MP -MF .deps/eLfold.Tpo -c eLfold.c -fPIC -DPIC -o .libs/eLfold.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT eLfold.lo -MD -MP -MF .deps/eLfold.Tpo -c eLfold.c -o eLfold.o >/dev/null 2>&1 mv -f .deps/eLfold.Tpo .deps/eLfold.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT epart_func_co.lo -MD -MP -MF .deps/epart_func_co.Tpo -c -o epart_func_co.lo epart_func_co.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT epart_func_co.lo -MD -MP -MF .deps/epart_func_co.Tpo -c epart_func_co.c -fPIC -DPIC -o .libs/epart_func_co.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT epart_func_co.lo -MD -MP -MF .deps/epart_func_co.Tpo -c epart_func_co.c -o epart_func_co.o >/dev/null 2>&1 mv -f .deps/epart_func_co.Tpo .deps/epart_func_co.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func_up.lo -MD -MP -MF .deps/part_func_up.Tpo -c -o part_func_up.lo part_func_up.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func_up.lo -MD -MP -MF .deps/part_func_up.Tpo -c part_func_up.c -fPIC -DPIC -o .libs/part_func_up.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT part_func_up.lo -MD -MP -MF .deps/part_func_up.Tpo -c part_func_up.c -o part_func_up.o >/dev/null 2>&1 mv -f .deps/part_func_up.Tpo .deps/part_func_up.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileAln.lo -MD -MP -MF .deps/ProfileAln.Tpo -c -o ProfileAln.lo ProfileAln.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileAln.lo -MD -MP -MF .deps/ProfileAln.Tpo -c ProfileAln.c -fPIC -DPIC -o .libs/ProfileAln.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT ProfileAln.lo -MD -MP -MF .deps/ProfileAln.Tpo -c ProfileAln.c -o ProfileAln.o >/dev/null 2>&1 mv -f .deps/ProfileAln.Tpo .deps/ProfileAln.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT duplex.lo -MD -MP -MF .deps/duplex.Tpo -c -o duplex.lo duplex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT duplex.lo -MD -MP -MF .deps/duplex.Tpo -c duplex.c -fPIC -DPIC -o .libs/duplex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT duplex.lo -MD -MP -MF .deps/duplex.Tpo -c duplex.c -o duplex.o >/dev/null 2>&1 mv -f .deps/duplex.Tpo .deps/duplex.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alifold.lo -MD -MP -MF .deps/alifold.Tpo -c -o alifold.lo alifold.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alifold.lo -MD -MP -MF .deps/alifold.Tpo -c alifold.c -fPIC -DPIC -o .libs/alifold.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alifold.lo -MD -MP -MF .deps/alifold.Tpo -c alifold.c -o alifold.o >/dev/null 2>&1 mv -f .deps/alifold.Tpo .deps/alifold.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alipfold.lo -MD -MP -MF .deps/alipfold.Tpo -c -o alipfold.lo alipfold.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alipfold.lo -MD -MP -MF .deps/alipfold.Tpo -c alipfold.c -fPIC -DPIC -o .libs/alipfold.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT alipfold.lo -MD -MP -MF .deps/alipfold.Tpo -c alipfold.c -o alipfold.o >/dev/null 2>&1 mv -f .deps/alipfold.Tpo .deps/alipfold.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT aln_util.lo -MD -MP -MF .deps/aln_util.Tpo -c -o aln_util.lo aln_util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT aln_util.lo -MD -MP -MF .deps/aln_util.Tpo -c aln_util.c -fPIC -DPIC -o .libs/aln_util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT aln_util.lo -MD -MP -MF .deps/aln_util.Tpo -c aln_util.c -o aln_util.o >/dev/null 2>&1 mv -f .deps/aln_util.Tpo .deps/aln_util.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT getconstraints.lo -MD -MP -MF .deps/getconstraints.Tpo -c -o getconstraints.lo getconstraints.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT getconstraints.lo -MD -MP -MF .deps/getconstraints.Tpo -c getconstraints.c -fPIC -DPIC -o .libs/getconstraints.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT getconstraints.lo -MD -MP -MF .deps/getconstraints.Tpo -c getconstraints.c -o getconstraints.o >/dev/null 2>&1 mv -f .deps/getconstraints.Tpo .deps/getconstraints.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -version-info 1:7:0 -o liboviennarna.la -rpath /usr/lib dist_vars.lo fold_vars.lo part_func.lo eread_epars.lo treedist.lo energy_par.lo inverse.lo ProfileDist.lo RNAstruct.lo utils.lo fold.lo naview.lo ePS_dot.lo stringdist.lo params.lo subopt.lo list.lo cofold.lo eLfold.lo epart_func_co.lo part_func_up.lo ProfileAln.lo duplex.lo alifold.lo alipfold.lo aln_util.lo getconstraints.lo -lm -lgd -lpng -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/dist_vars.o .libs/fold_vars.o .libs/part_func.o .libs/eread_epars.o .libs/treedist.o .libs/energy_par.o .libs/inverse.o .libs/ProfileDist.o .libs/RNAstruct.o .libs/utils.o .libs/fold.o .libs/naview.o .libs/ePS_dot.o .libs/stringdist.o .libs/params.o .libs/subopt.o .libs/list.o .libs/cofold.o .libs/eLfold.o .libs/epart_func_co.o .libs/part_func_up.o .libs/ProfileAln.o .libs/duplex.o .libs/alifold.o .libs/alipfold.o .libs/aln_util.o .libs/getconstraints.o -lgd -lpng -lz -lm -O2 -march=i586 -mtune=i686 -O2 -Wl,-soname -Wl,liboviennarna.so.1 -o .libs/liboviennarna.so.1.0.7 libtool: link: (cd ".libs" && rm -f "liboviennarna.so.1" && ln -s "liboviennarna.so.1.0.7" "liboviennarna.so.1") libtool: link: (cd ".libs" && rm -f "liboviennarna.so" && ln -s "liboviennarna.so.1.0.7" "liboviennarna.so") libtool: link: ar cru .libs/liboviennarna.a dist_vars.o fold_vars.o part_func.o eread_epars.o treedist.o energy_par.o inverse.o ProfileDist.o RNAstruct.o utils.o fold.o naview.o ePS_dot.o stringdist.o params.o subopt.o list.o cofold.o eLfold.o epart_func_co.o part_func_up.o ProfileAln.o duplex.o alifold.o alipfold.o aln_util.o getconstraints.o libtool: link: ranlib .libs/liboviennarna.a libtool: link: ( cd ".libs" && rm -f "liboviennarna.la" && ln -s "../liboviennarna.la" "liboviennarna.la" ) gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaalifold.o -MD -MP -MF .deps/vrnaalifold.Tpo -c -o vrnaalifold.o vrnaalifold.c mv -f .deps/vrnaalifold.Tpo .deps/vrnaalifold.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaalifold vrnaalifold.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaalifold vrnaalifold.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnacofoldpf.o -MD -MP -MF .deps/vrnacofoldpf.Tpo -c -o vrnacofoldpf.o vrnacofoldpf.c mv -f .deps/vrnacofoldpf.Tpo .deps/vrnacofoldpf.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnacofoldpf vrnacofoldpf.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnacofoldpf vrnacofoldpf.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaevalpair.o -MD -MP -MF .deps/vrnaevalpair.Tpo -c -o vrnaevalpair.o vrnaevalpair.c mv -f .deps/vrnaevalpair.Tpo .deps/vrnaevalpair.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaevalpair vrnaevalpair.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaevalpair vrnaevalpair.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnainverse.o -MD -MP -MF .deps/vrnainverse.Tpo -c -o vrnainverse.o vrnainverse.c mv -f .deps/vrnainverse.Tpo .deps/vrnainverse.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnainverse vrnainverse.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnainverse vrnainverse.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaalifoldpf.o -MD -MP -MF .deps/vrnaalifoldpf.Tpo -c -o vrnaalifoldpf.o vrnaalifoldpf.c mv -f .deps/vrnaalifoldpf.Tpo .deps/vrnaalifoldpf.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaalifoldpf vrnaalifoldpf.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaalifoldpf vrnaalifoldpf.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnadistance.o -MD -MP -MF .deps/vrnadistance.Tpo -c -o vrnadistance.o vrnadistance.c mv -f .deps/vrnadistance.Tpo .deps/vrnadistance.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnadistance vrnadistance.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnadistance vrnadistance.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnafold.o -MD -MP -MF .deps/vrnafold.Tpo -c -o vrnafold.o vrnafold.c mv -f .deps/vrnafold.Tpo .deps/vrnafold.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnafold vrnafold.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnafold vrnafold.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnalfold.o -MD -MP -MF .deps/vrnalfold.Tpo -c -o vrnalfold.o vrnalfold.c mv -f .deps/vrnalfold.Tpo .deps/vrnalfold.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnalfold vrnalfold.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnalfold vrnalfold.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnacofold.o -MD -MP -MF .deps/vrnacofold.Tpo -c -o vrnacofold.o vrnacofold.c mv -f .deps/vrnacofold.Tpo .deps/vrnacofold.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnacofold vrnacofold.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnacofold vrnacofold.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaduplex.o -MD -MP -MF .deps/vrnaduplex.Tpo -c -o vrnaduplex.o vrnaduplex.c mv -f .deps/vrnaduplex.Tpo .deps/vrnaduplex.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaduplex vrnaduplex.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaduplex vrnaduplex.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnafoldpf.o -MD -MP -MF .deps/vrnafoldpf.Tpo -c -o vrnafoldpf.o vrnafoldpf.c mv -f .deps/vrnafoldpf.Tpo .deps/vrnafoldpf.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnafoldpf vrnafoldpf.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnafoldpf vrnafoldpf.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaplot.o -MD -MP -MF .deps/vrnaplot.Tpo -c -o vrnaplot.o vrnaplot.c mv -f .deps/vrnaplot.Tpo .deps/vrnaplot.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaplot vrnaplot.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaplot vrnaplot.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnacofoldconc.o -MD -MP -MF .deps/vrnacofoldconc.Tpo -c -o vrnacofoldconc.o vrnacofoldconc.c mv -f .deps/vrnacofoldconc.Tpo .deps/vrnacofoldconc.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnacofoldconc vrnacofoldconc.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnacofoldconc vrnacofoldconc.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaeval.o -MD -MP -MF .deps/vrnaeval.Tpo -c -o vrnaeval.o vrnaeval.c mv -f .deps/vrnaeval.Tpo .deps/vrnaeval.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaeval vrnaeval.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaeval vrnaeval.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnaheat.o -MD -MP -MF .deps/vrnaheat.Tpo -c -o vrnaheat.o vrnaheat.c mv -f .deps/vrnaheat.Tpo .deps/vrnaheat.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnaheat vrnaheat.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnaheat vrnaheat.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../H -I/usr/include -I/usr/include/eplplot -I/usr/include/ezlib -I/usr/include/eexpat -I/usr/include/epcre -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -MT vrnasubopt.o -MD -MP -MF .deps/vrnasubopt.Tpo -c -o vrnasubopt.o vrnasubopt.c mv -f .deps/vrnasubopt.Tpo .deps/vrnasubopt.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o ovrnasubopt vrnasubopt.o liboviennarna.la -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -O2 -o .libs/ovrnasubopt vrnasubopt.o ./.libs/liboviennarna.so -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leexpat -lezlib -leplplot -lX11 -lgd -lpng -lz -lm make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' Making all in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' Making all in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' Making all in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' Making all in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' Making install in src make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c liboviennarna.la '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/liboviennarna.so.1.0.7 /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/liboviennarna.so.1.0.7 libtool: install: (cd /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib && { ln -s -f liboviennarna.so.1.0.7 liboviennarna.so.1 || { rm -f liboviennarna.so.1 && ln -s liboviennarna.so.1.0.7 liboviennarna.so.1; }; }) libtool: install: (cd /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib && { ln -s -f liboviennarna.so.1.0.7 liboviennarna.so || { rm -f liboviennarna.so && ln -s liboviennarna.so.1.0.7 liboviennarna.so; }; }) libtool: install: /usr/bin/ginstall -c .libs/liboviennarna.lai /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/liboviennarna.la libtool: install: /usr/bin/ginstall -c .libs/liboviennarna.a /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/liboviennarna.a libtool: install: chmod 644 /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/liboviennarna.a libtool: install: ranlib /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/lib/liboviennarna.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c ovrnaalifold ovrnacofoldpf ovrnaevalpair ovrnainverse ovrnaalifoldpf ovrnadistance ovrnafold ovrnalfold ovrnacofold ovrnaduplex ovrnafoldpf ovrnaplot ovrnacofoldconc ovrnaeval ovrnaheat ovrnasubopt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin' libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaalifold /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaalifold libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnacofoldpf /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnacofoldpf libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaevalpair /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaevalpair libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnainverse /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnainverse libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaalifoldpf /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaalifoldpf libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnadistance /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnadistance libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnafold /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnafold libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnalfold /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnalfold libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnacofold /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnacofold libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaduplex /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaduplex libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnafoldpf /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnafoldpf libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaplot /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaplot libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnacofoldconc /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnacofoldconc libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaeval /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaeval libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnaheat /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnaheat libtool: install: warning: `liboviennarna.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/ginstall -c .libs/ovrnasubopt /usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/bin/ovrnasubopt make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/src' Making install in emboss_acd make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' /usr/bin/ginstall -c -m 644 ovrnaalifold.acd ovrnadistance.acd ovrnafoldpf.acd ovrnaplot.acd ovrnaalifoldpf.acd ovrnaduplex.acd ovrnaheat.acd ovrnasubopt.acd ovrnacofold.acd ovrnaeval.acd ovrnainverse.acd ovrnacofoldconc.acd ovrnaevalpair.acd ovrnalfold.acd ovrnacofoldpf.acd ovrnafold.acd '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/acd' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_acd' Making install in emboss_doc make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' Making install in html make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/oldvienna' /usr/bin/ginstall -c -m 644 index.html ovrnaalifold.html ovrnaalifoldpf.html ovrnacofold.html ovrnacofoldconc.html ovrnacofoldpf.html ovrnadistance.html ovrnaduplex.html ovrnaeval.html ovrnaevalpair.html ovrnafold.html ovrnafoldpf.html ovrnaheat.html ovrnainverse.html ovrnalfold.html ovrnaplot.html ovrnasubopt.html '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/html/embassy/oldvienna' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/html' Making install in text make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' /usr/bin/ginstall -c -m 644 ovrnaalifold.txt ovrnaalifoldpf.txt ovrnacofold.txt ovrnacofoldconc.txt ovrnacofoldpf.txt ovrnadistance.txt ovrnaduplex.txt ovrnaeval.txt ovrnaevalpair.txt ovrnafold.txt ovrnafoldpf.txt ovrnaheat.txt ovrnainverse.txt ovrnalfold.txt ovrnaplot.txt ovrnasubopt.txt '/usr/src/slapt-src/academic/EMBASSY/package-EMBASSY/usr/share/EMBOSS/doc/programs/text' make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc/text' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[3]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650/emboss_doc' make[1]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' make[2]: Entering directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' make[1]: Leaving directory '/usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0/VIENNA-1.7.2.650' Slackware package maker, version 3.14159265. Searching for symbolic links: usr/lib/libckit.so libckit.so.0.1.0 usr/lib/libckit.so.0 libckit.so.0.1.0 usr/lib/liboviennarna.so liboviennarna.so.1.0.7 usr/lib/liboviennarna.so.1 liboviennarna.so.1.0.7 Making symbolic link creation script: ( cd usr/lib ; rm -rf libckit.so ) ( cd usr/lib ; ln -sf libckit.so.0.1.0 libckit.so ) ( cd usr/lib ; rm -rf libckit.so.0 ) ( cd usr/lib ; ln -sf libckit.so.0.1.0 libckit.so.0 ) ( cd usr/lib ; rm -rf liboviennarna.so ) ( cd usr/lib ; ln -sf liboviennarna.so.1.0.7 liboviennarna.so ) ( cd usr/lib ; rm -rf liboviennarna.so.1 ) ( cd usr/lib ; ln -sf liboviennarna.so.1.0.7 liboviennarna.so.1 ) It is recommended that you make these lines your new installation script. Would you like to make this stuff the install script for this package and remove the symbolic links ([y]es, [n]o)? y Removing symbolic links: removed './usr/lib/libckit.so.0' removed './usr/lib/libckit.so' removed './usr/lib/liboviennarna.so.1' removed './usr/lib/liboviennarna.so' Creating your new ./install/doinst.sh... This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/EMBASSY/EMBASSY-6.6.0-i586-3salix15.0.txz ./ install/ install/doinst.sh install/slack-desc usr/ usr/bin/ usr/bin/allversusall usr/bin/cathparse usr/bin/contacts usr/bin/domainalign usr/bin/domainer usr/bin/domainnr usr/bin/domainrep usr/bin/domainreso usr/bin/domainseqs usr/bin/domainsse usr/bin/echlorop usr/bin/ehmmalign usr/bin/ehmmbuild usr/bin/ehmmcalibrate usr/bin/ehmmconvert usr/bin/ehmmemit usr/bin/ehmmfetch usr/bin/ehmmindex usr/bin/ehmmpfam usr/bin/ehmmsearch usr/bin/eiprscan usr/bin/elipop usr/bin/emast usr/bin/ememe usr/bin/ememetext usr/bin/emnu usr/bin/enetnglyc usr/bin/enetoglyc usr/bin/enetphos usr/bin/eomega usr/bin/eomegapp usr/bin/eomegaps usr/bin/eomegash usr/bin/eomegasp usr/bin/eprop usr/bin/esignalp usr/bin/esim4 usr/bin/etmhmm usr/bin/eyinoyang usr/bin/fclique usr/bin/fconsense usr/bin/fcontml usr/bin/fcontrast usr/bin/fdiscboot usr/bin/fdnacomp usr/bin/fdnadist usr/bin/fdnainvar usr/bin/fdnaml usr/bin/fdnamlk usr/bin/fdnamove usr/bin/fdnapars usr/bin/fdnapenny usr/bin/fdollop usr/bin/fdolmove usr/bin/fdolpenny usr/bin/fdrawgram usr/bin/fdrawtree usr/bin/ffactor usr/bin/ffitch usr/bin/ffreqboot usr/bin/fgendist usr/bin/fkitsch usr/bin/fmix usr/bin/fmove usr/bin/fneighbor usr/bin/fpars usr/bin/fpenny usr/bin/fproml usr/bin/fpromlk usr/bin/fprotdist usr/bin/fprotpars usr/bin/frestboot usr/bin/frestdist usr/bin/frestml usr/bin/fretree usr/bin/fseqboot usr/bin/fseqbootall usr/bin/ftreedist usr/bin/ftreedistpair usr/bin/hetparse usr/bin/interface usr/bin/libgen usr/bin/matgen3d usr/bin/mse usr/bin/ovrnaalifold usr/bin/ovrnaalifoldpf usr/bin/ovrnacofold usr/bin/ovrnacofoldconc usr/bin/ovrnacofoldpf usr/bin/ovrnadistance usr/bin/ovrnaduplex usr/bin/ovrnaeval usr/bin/ovrnaevalpair usr/bin/ovrnafold usr/bin/ovrnafoldpf usr/bin/ovrnaheat usr/bin/ovrnainverse usr/bin/ovrnalfold usr/bin/ovrnaplot usr/bin/ovrnasubopt usr/bin/pdbparse usr/bin/pdbplus usr/bin/pdbtosp usr/bin/rocon usr/bin/rocplot usr/bin/scopparse usr/bin/seqalign usr/bin/seqfraggle usr/bin/seqnr usr/bin/seqsearch usr/bin/seqsort usr/bin/seqwords usr/bin/siggen usr/bin/siggenlig usr/bin/sigscan usr/bin/sigscanlig usr/bin/sites usr/bin/ssematch usr/bin/topo usr/doc/ usr/doc/EMBASSY-6.6.0/ usr/doc/EMBASSY-6.6.0/CONTENTS usr/doc/EMBASSY-6.6.0/EMBASSY.SlackBuild usr/lib/ usr/lib/libckit.a usr/lib/libckit.so.0.1.0 usr/lib/liboviennarna.a usr/lib/liboviennarna.so.1.0.7 usr/share/ usr/share/EMBOSS/ usr/share/EMBOSS/acd/ usr/share/EMBOSS/acd/allversusall.acd usr/share/EMBOSS/acd/cathparse.acd usr/share/EMBOSS/acd/contacts.acd usr/share/EMBOSS/acd/domainalign.acd usr/share/EMBOSS/acd/domainer.acd usr/share/EMBOSS/acd/domainnr.acd usr/share/EMBOSS/acd/domainrep.acd usr/share/EMBOSS/acd/domainreso.acd usr/share/EMBOSS/acd/domainseqs.acd usr/share/EMBOSS/acd/domainsse.acd usr/share/EMBOSS/acd/echlorop.acd usr/share/EMBOSS/acd/ehmmalign.acd usr/share/EMBOSS/acd/ehmmbuild.acd usr/share/EMBOSS/acd/ehmmcalibrate.acd usr/share/EMBOSS/acd/ehmmconvert.acd usr/share/EMBOSS/acd/ehmmemit.acd usr/share/EMBOSS/acd/ehmmfetch.acd usr/share/EMBOSS/acd/ehmmindex.acd usr/share/EMBOSS/acd/ehmmpfam.acd usr/share/EMBOSS/acd/ehmmsearch.acd usr/share/EMBOSS/acd/eiprscan.acd usr/share/EMBOSS/acd/elipop.acd usr/share/EMBOSS/acd/emast.acd usr/share/EMBOSS/acd/ememe.acd usr/share/EMBOSS/acd/ememetext.acd usr/share/EMBOSS/acd/emnu.acd usr/share/EMBOSS/acd/enetnglyc.acd usr/share/EMBOSS/acd/enetoglyc.acd usr/share/EMBOSS/acd/enetphos.acd usr/share/EMBOSS/acd/eomega.acd usr/share/EMBOSS/acd/eomegapp.acd usr/share/EMBOSS/acd/eomegaps.acd usr/share/EMBOSS/acd/eomegash.acd usr/share/EMBOSS/acd/eomegasp.acd usr/share/EMBOSS/acd/eprop.acd usr/share/EMBOSS/acd/esignalp.acd usr/share/EMBOSS/acd/esim4.acd usr/share/EMBOSS/acd/etmhmm.acd usr/share/EMBOSS/acd/eyinoyang.acd 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Installing package EMBASSY-6.6.0-i586-3salix15.0... | EMBASSY (EMBOSS associated software) | | EMBASSY packages include applications with the same look and feel | as EMBOSS applications, but which the author wishes to be kept | separate from EMBOSS. | | Home: http://emboss.sourceforge.net/embassy/ | | | | | |