./ install/ install/doinst.sh install/slack-desc usr/ usr/bin/ usr/doc/ usr/doc/fastqc-0.11.9/ usr/doc/fastqc-0.11.9/INSTALL.txt usr/doc/fastqc-0.11.9/LICENSE.txt usr/doc/fastqc-0.11.9/LICENSE_JHDF5.txt usr/doc/fastqc-0.11.9/README.txt usr/doc/fastqc-0.11.9/RELEASE_NOTES.txt usr/doc/fastqc-0.11.9/fastqc.SlackBuild usr/share/ usr/share/applications/ usr/share/applications/fastqc.desktop usr/share/java/ usr/share/java/fastqc/ usr/share/java/fastqc/Configuration/ usr/share/java/fastqc/Configuration/adapter_list.txt usr/share/java/fastqc/Configuration/contaminant_list.txt usr/share/java/fastqc/Configuration/limits.txt usr/share/java/fastqc/Help/ usr/share/java/fastqc/Help/1 Introduction/ usr/share/java/fastqc/Help/1 Introduction/.svn/ usr/share/java/fastqc/Help/1 Introduction/.svn/entries usr/share/java/fastqc/Help/1 Introduction/.svn/props/ usr/share/java/fastqc/Help/1 Introduction/.svn/text-base/ usr/share/java/fastqc/Help/1 Introduction/.svn/text-base/1.1 What is FastQC.html.svn-base usr/share/java/fastqc/Help/1 Introduction/.svn/tmp/ usr/share/java/fastqc/Help/1 Introduction/.svn/tmp/props/ usr/share/java/fastqc/Help/1 Introduction/1.1 What is FastQC.html usr/share/java/fastqc/Help/2 Basic Operations/ usr/share/java/fastqc/Help/2 Basic Operations/.svn/ usr/share/java/fastqc/Help/2 Basic Operations/.svn/entries usr/share/java/fastqc/Help/2 Basic Operations/.svn/props/ usr/share/java/fastqc/Help/2 Basic Operations/.svn/text-base/ usr/share/java/fastqc/Help/2 Basic Operations/.svn/text-base/2.1 Opening a sequence file.html.svn-base usr/share/java/fastqc/Help/2 Basic Operations/.svn/text-base/2.2 Evaluating Results.html.svn-base usr/share/java/fastqc/Help/2 Basic Operations/.svn/text-base/2.3 Saving a Report.html.svn-base usr/share/java/fastqc/Help/2 Basic Operations/.svn/tmp/ usr/share/java/fastqc/Help/2 Basic Operations/.svn/tmp/props/ usr/share/java/fastqc/Help/2 Basic Operations/2.1 Opening a sequence file.html usr/share/java/fastqc/Help/2 Basic Operations/2.2 Evaluating Results.html usr/share/java/fastqc/Help/2 Basic Operations/2.3 Saving a Report.html usr/share/java/fastqc/Help/3 Analysis Modules/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/entries usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/duplication_levels.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/kmer_profiles.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_gc_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_n_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_sequence_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_gc_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_tile_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/prop-base/sequence_length_distribution.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/props/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/1 Basic Statistics.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/10 Adapter Content.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/11 Kmer Content.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/12 Per Tile Sequence Quality.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/2 Per Base Sequence Quality.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/3 Per Sequence Quality Scores.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/4 Per Base Sequence Content.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/5 Per Sequence GC Content.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/6 Per Base N Content.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/7 Sequence Length Distribution.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/8 Duplicate Sequences.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/9 Overrepresented Sequences.html.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/duplication_levels.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/kmer_profiles.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_gc_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_n_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_sequence_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_gc_content.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/per_tile_quality.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/text-base/sequence_length_distribution.png.svn-base usr/share/java/fastqc/Help/3 Analysis Modules/.svn/tmp/ usr/share/java/fastqc/Help/3 Analysis Modules/.svn/tmp/props/ usr/share/java/fastqc/Help/3 Analysis Modules/1 Basic Statistics.html usr/share/java/fastqc/Help/3 Analysis Modules/10 Adapter Content.html usr/share/java/fastqc/Help/3 Analysis Modules/11 Kmer Content.html usr/share/java/fastqc/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html usr/share/java/fastqc/Help/3 Analysis Modules/2 Per Base Sequence Quality.html usr/share/java/fastqc/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html usr/share/java/fastqc/Help/3 Analysis Modules/4 Per Base Sequence Content.html usr/share/java/fastqc/Help/3 Analysis Modules/5 Per Sequence GC Content.html usr/share/java/fastqc/Help/3 Analysis Modules/6 Per Base N Content.html usr/share/java/fastqc/Help/3 Analysis Modules/7 Sequence Length Distribution.html usr/share/java/fastqc/Help/3 Analysis Modules/8 Duplicate Sequences.html usr/share/java/fastqc/Help/3 Analysis Modules/9 Overrepresented Sequences.html usr/share/java/fastqc/Help/3 Analysis Modules/duplication_levels.png usr/share/java/fastqc/Help/3 Analysis Modules/kmer_profiles.png usr/share/java/fastqc/Help/3 Analysis Modules/per_base_gc_content.png usr/share/java/fastqc/Help/3 Analysis Modules/per_base_n_content.png usr/share/java/fastqc/Help/3 Analysis Modules/per_base_quality.png usr/share/java/fastqc/Help/3 Analysis Modules/per_base_sequence_content.png usr/share/java/fastqc/Help/3 Analysis Modules/per_sequence_gc_content.png usr/share/java/fastqc/Help/3 Analysis Modules/per_sequence_quality.png usr/share/java/fastqc/Help/3 Analysis Modules/per_tile_quality.png usr/share/java/fastqc/Help/3 Analysis Modules/sequence_length_distribution.png usr/share/java/fastqc/Templates/ usr/share/java/fastqc/Templates/Icons/ usr/share/java/fastqc/Templates/Icons/error.png usr/share/java/fastqc/Templates/Icons/fastqc_icon.png usr/share/java/fastqc/Templates/Icons/tick.png usr/share/java/fastqc/Templates/Icons/warning.png usr/share/java/fastqc/Templates/fastqc2fo.xsl usr/share/java/fastqc/Templates/header_template.html usr/share/java/fastqc/cisd-jhdf5.jar usr/share/java/fastqc/fastqc usr/share/java/fastqc/jbzip2-0.9.jar usr/share/java/fastqc/net/ usr/share/java/fastqc/net/sourceforge/ usr/share/java/fastqc/net/sourceforge/iharder/ usr/share/java/fastqc/net/sourceforge/iharder/base64/ usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$1.class usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64.class usr/share/java/fastqc/org/ usr/share/java/fastqc/org/apache/ usr/share/java/fastqc/org/apache/commons/ usr/share/java/fastqc/org/apache/commons/math3/ usr/share/java/fastqc/org/apache/commons/math3/analysis/ usr/share/java/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/ usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class usr/share/java/fastqc/org/apache/commons/math3/distribution/ usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/FDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/RealDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class usr/share/java/fastqc/org/apache/commons/math3/distribution/TDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class usr/share/java/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class usr/share/java/fastqc/org/apache/commons/math3/exception/ usr/share/java/fastqc/org/apache/commons/math3/exception/ConvergenceException.class usr/share/java/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class usr/share/java/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class usr/share/java/fastqc/org/apache/commons/math3/exception/MathInternalError.class usr/share/java/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NoBracketingException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NotPositiveException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NullArgumentException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class usr/share/java/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class usr/share/java/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class usr/share/java/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class usr/share/java/fastqc/org/apache/commons/math3/exception/util/ usr/share/java/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class usr/share/java/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class usr/share/java/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class usr/share/java/fastqc/org/apache/commons/math3/exception/util/Localizable.class usr/share/java/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class usr/share/java/fastqc/org/apache/commons/math3/random/ usr/share/java/fastqc/org/apache/commons/math3/random/AbstractWell.class usr/share/java/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class usr/share/java/fastqc/org/apache/commons/math3/random/RandomData.class usr/share/java/fastqc/org/apache/commons/math3/random/RandomDataImpl.class usr/share/java/fastqc/org/apache/commons/math3/random/RandomGenerator.class usr/share/java/fastqc/org/apache/commons/math3/random/Well19937c.class usr/share/java/fastqc/org/apache/commons/math3/special/ usr/share/java/fastqc/org/apache/commons/math3/special/Beta$1.class usr/share/java/fastqc/org/apache/commons/math3/special/Beta.class usr/share/java/fastqc/org/apache/commons/math3/special/Erf.class usr/share/java/fastqc/org/apache/commons/math3/special/Gamma$1.class usr/share/java/fastqc/org/apache/commons/math3/special/Gamma.class usr/share/java/fastqc/org/apache/commons/math3/util/ usr/share/java/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class usr/share/java/fastqc/org/apache/commons/math3/util/ContinuedFraction.class usr/share/java/fastqc/org/apache/commons/math3/util/DoubleArray.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMath.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMathCalc.class usr/share/java/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor$1.class usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor.class usr/share/java/fastqc/org/apache/commons/math3/util/MathUtils.class usr/share/java/fastqc/org/apache/commons/math3/util/Precision.class usr/share/java/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class usr/share/java/fastqc/sam-1.103.jar usr/share/java/fastqc/uk/ usr/share/java/fastqc/uk/ac/ usr/share/java/fastqc/uk/ac/babraham/ usr/share/java/fastqc/uk/ac/babraham/FastQC/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/ usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Report/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/error.png usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/tick.png usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/warning.png usr/share/java/fastqc/uk/ac/babraham/FastQC/Results/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Statistics/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/ usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class usr/share/pixmaps/ usr/share/pixmaps/fastqc.png /Utilities/ImageToBase64.class inflating: FastQC/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class inflating: FastQC/uk/ac/babraham/FastQC/Utilities/NameFormatException.class inflating: FastQC/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class inflating: FastQC/uk/ac/babraham/FastQC/Utilities/QualityCount.class inflating: FastQC/uk/ac/babraham/FastQC/Utilities/RGB.class /usr/src/slapt-src/academic/fastqc/FastQC /usr/src/slapt-src/academic/fastqc/FastQC Slackware package maker, version 3.14159265. Searching for symbolic links: usr/bin/fastqc ../share/java/fastqc/fastqc usr/doc/fastqc-0.11.9/Help ../../share/java/fastqc/Help Making symbolic link creation script: ( cd usr/bin ; rm -rf fastqc ) ( cd usr/bin ; ln -sf ../share/java/fastqc/fastqc fastqc ) ( cd usr/doc/fastqc-0.11.9 ; rm -rf Help ) ( cd usr/doc/fastqc-0.11.9 ; ln -sf ../../share/java/fastqc/Help Help ) Unless your existing installation script already contains the code to create these links, you should append these lines to your existing install script. Now's your chance. :^) Would you like to add this stuff to the existing install script and remove the symbolic links ([y]es, [n]o)? y Removing symbolic links: removed './usr/bin/fastqc' removed './usr/doc/fastqc-0.11.9/Help' Updating your ./install/doinst.sh... This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/fastqc/fastqc-0.11.9-noarch-1salix15.0.txz Slackware package /usr/src/slapt-src/academic/fastqc/fastqc-0.11.9-noarch-1salix15.0.txz created. Installing package fastqc-0.11.9-noarch-1salix15.0... | fastqc (A quality control tool for high throughput sequence data) | | FastQC aims to provide a simple way to do some quality control | checks on raw sequence data coming from high throughput | sequencing pipelines. It provides a modular set of analyses | which you can use to give a quick impression of whether your | data has any problems of which you should be aware before | doing any further analysis. | | Home: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ | | | WARNING: Failed to create symlink /usr/doc/fastqc-0.11.8/Help -> ../../share/java/fastqc/Help (No such file or directory) WARNING: Failed to create symlink /usr/bin/fastqc -> ../share/java/fastqc/fastqc (File exists)