CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. .5.0/src/Flexbar.cpp flexbar-3.5.0/src/Flexbar.h flexbar-3.5.0/src/FlexbarIO.h flexbar-3.5.0/src/FlexbarTypes.h flexbar-3.5.0/src/LoadAdapters.h flexbar-3.5.0/src/LoadFasta.h flexbar-3.5.0/src/Options.h flexbar-3.5.0/src/PairedAlign.h flexbar-3.5.0/src/PairedInput.h flexbar-3.5.0/src/PairedOutput.h flexbar-3.5.0/src/QualTrimming.h flexbar-3.5.0/src/SeqAlign.h flexbar-3.5.0/src/SeqAlignAlgo.h flexbar-3.5.0/src/SeqAlignPair.h flexbar-3.5.0/src/SeqInput.h flexbar-3.5.0/src/SeqOutput.h flexbar-3.5.0/src/SeqOutputFiles.h flexbar-3.5.0/test/ flexbar-3.5.0/test/adapters.fasta flexbar-3.5.0/test/adapters1.fasta flexbar-3.5.0/test/adapters2.fasta flexbar-3.5.0/test/barcodes.fasta flexbar-3.5.0/test/barcodes_N.fasta flexbar-3.5.0/test/correct_result_any.fasta flexbar-3.5.0/test/correct_result_any.fastq flexbar-3.5.0/test/correct_result_left.fasta flexbar-3.5.0/test/correct_result_left.fastq flexbar-3.5.0/test/correct_result_left_tail.fasta flexbar-3.5.0/test/correct_result_left_tail.fastq flexbar-3.5.0/test/correct_result_right.fasta flexbar-3.5.0/test/correct_result_right.fastq flexbar-3.5.0/test/correct_result_right_tail.fasta flexbar-3.5.0/test/correct_result_right_tail.fastq flexbar-3.5.0/test/flexbar_test.sh flexbar-3.5.0/test/flexbar_test_fasta.sh flexbar-3.5.0/test/flexbar_test_fastq.sh flexbar-3.5.0/test/flexbar_test_zip.sh flexbar-3.5.0/test/reads.fasta flexbar-3.5.0/test/reads.fastq flexbar-3.5.0/test/reads.fastq.bz2 flexbar-3.5.0/test/reads.fastq.gz flexbar-3.5.0/test/reads1.fasta flexbar-3.5.0/test/reads2.fasta seqan-library-2.4.0/include/ seqan-library-2.4.0/include/seqan/ seqan-library-2.4.0/include/seqan/journaled_set.h seqan-library-2.4.0/include/seqan/misc/ seqan-library-2.4.0/include/seqan/misc/name_store_cache.h seqan-library-2.4.0/include/seqan/misc/interval_tree.h seqan-library-2.4.0/include/seqan/misc/bit_twiddling_functors.h seqan-library-2.4.0/include/seqan/misc/priority_type_heap.h seqan-library-2.4.0/include/seqan/misc/bit_twiddling.h seqan-library-2.4.0/include/seqan/misc/dequeue.h seqan-library-2.4.0/include/seqan/misc/accumulators.h seqan-library-2.4.0/include/seqan/misc/priority_type_base.h seqan-library-2.4.0/include/seqan/misc/union_find.h seqan-library-2.4.0/include/seqan/misc/map.h seqan-library-2.4.0/include/seqan/misc/set.h seqan-library-2.4.0/include/seqan/misc/svg.h seqan-library-2.4.0/include/seqan/misc/memset.h seqan-library-2.4.0/include/seqan/misc/base.h seqan-library-2.4.0/include/seqan/misc/edit_environment.h seqan-library-2.4.0/include/seqan/misc/terminal.h seqan-library-2.4.0/include/seqan/index/ seqan-library-2.4.0/include/seqan/index/index_bifm_stree.h seqan-library-2.4.0/include/seqan/index/find2_vstree_factory.h seqan-library-2.4.0/include/seqan/index/index_bifm.h seqan-library-2.4.0/include/seqan/index/shape_threshold.h seqan-library-2.4.0/include/seqan/index/index_esa_drawing.h seqan-library-2.4.0/include/seqan/index/index_view.h seqan-library-2.4.0/include/seqan/index/pump_lcp_core.h seqan-library-2.4.0/include/seqan/index/index_sa_btree.h seqan-library-2.4.0/include/seqan/index/index_fm_rank_dictionary_naive.h seqan-library-2.4.0/include/seqan/index/index_fm.h seqan-library-2.4.0/include/seqan/index/index_dfi.h seqan-library-2.4.0/include/seqan/index/index_pizzachili_find.h seqan-library-2.4.0/include/seqan/index/index_fm_stree.h seqan-library-2.4.0/include/seqan/index/pipe_merger3.h seqan-library-2.4.0/include/seqan/index/index_wotd.h seqan-library-2.4.0/include/seqan/index/find2_index_approx.h seqan-library-2.4.0/include/seqan/index/index_sa_qsort.h seqan-library-2.4.0/include/seqan/index/find_backtracking.h seqan-library-2.4.0/include/seqan/index/index_esa_algs_multi.h seqan-library-2.4.0/include/seqan/index/find2_base.h seqan-library-2.4.0/include/seqan/index/find_pigeonhole.h seqan-library-2.4.0/include/seqan/index/find2_backtracking.h seqan-library-2.4.0/include/seqan/index/index_base.h seqan-library-2.4.0/include/seqan/index/index_qgram_stree.h seqan-library-2.4.0/include/seqan/index/find_quasar.h seqan-library-2.4.0/include/seqan/index/index_sa_lss.h seqan-library-2.4.0/include/seqan/index/index_esa_algs.h seqan-library-2.4.0/include/seqan/index/index_fm_dox.h seqan-library-2.4.0/include/seqan/index/repeat_base.h seqan-library-2.4.0/include/seqan/index/pump_separator7.h seqan-library-2.4.0/include/seqan/index/index_sa_bwtwalk.h seqan-library-2.4.0/include/seqan/index/index_fm_rank_dictionary_base.h seqan-library-2.4.0/include/seqan/index/pizzachili_api.h seqan-library-2.4.0/include/seqan/index/index_qgram.h seqan-library-2.4.0/include/seqan/index/index_skew3.h seqan-library-2.4.0/include/seqan/index/find2_functors.h seqan-library-2.4.0/include/seqan/index/index_sa_mm.h seqan-library-2.4.0/include/seqan/index/index_fm_compressed_sa_iterator.h seqan-library-2.4.0/include/seqan/index/find_swift.h seqan-library-2.4.0/include/seqan/index/index_lcp_tree.h seqan-library-2.4.0/include/seqan/index/find_index.h seqan-library-2.4.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h seqan-library-2.4.0/include/seqan/index/index_bwt.h seqan-library-2.4.0/include/seqan/index/index_device.h seqan-library-2.4.0/include/seqan/index/index_fm_compressed_sa.h seqan-library-2.4.0/include/seqan/index/find_index_qgram.h seqan-library-2.4.0/include/seqan/index/index_shawarma.h seqan-library-2.4.0/include/seqan/index/find_index_binary.h seqan-library-2.4.0/include/seqan/index/find_index_esa.h seqan-library-2.4.0/include/seqan/index/shape_predefined.h seqan-library-2.4.0/include/seqan/index/shape_gapped.h seqan-library-2.4.0/include/seqan/index/index_sa_truncated.h seqan-library-2.4.0/include/seqan/index/index_fm_rank_dictionary_levels.h seqan-library-2.4.0/include/seqan/index/pump_extender3.h seqan-library-2.4.0/include/seqan/index/index_childtab.h seqan-library-2.4.0/include/seqan/index/index_fm_rank_dictionary_wt.h seqan-library-2.4.0/include/seqan/index/find_index_lambda.h seqan-library-2.4.0/include/seqan/index/index_fm_right_array_binary_tree.h seqan-library-2.4.0/include/seqan/index/index_esa_stree.h seqan-library-2.4.0/include/seqan/index/index_pizzachili.h seqan-library-2.4.0/include/seqan/index/index_esa_base.h seqan-library-2.4.0/include/seqan/index/shape_onegapped.h seqan-library-2.4.0/include/seqan/index/index_forwards.h seqan-library-2.4.0/include/seqan/index/index_skew7_multi.h seqan-library-2.4.0/include/seqan/index/index_fm_lf_table.h seqan-library-2.4.0/include/seqan/index/find_index_approx.h seqan-library-2.4.0/include/seqan/index/shape_base.h seqan-library-2.4.0/include/seqan/index/find2_index.h seqan-library-2.4.0/include/seqan/index/radix.h seqan-library-2.4.0/include/seqan/index/index_bidirectional_stree.h seqan-library-2.4.0/include/seqan/index/index_bidirectional.h seqan-library-2.4.0/include/seqan/index/index_skew7.h seqan-library-2.4.0/include/seqan/index/pipe_merger7.h seqan-library-2.4.0/include/seqan/index/index_lcp.h seqan-library-2.4.0/include/seqan/index/index_pizzachili_string.h seqan-library-2.4.0/include/seqan/index/pump_extender7.h seqan-library-2.4.0/include/seqan/index/shape_minimizer.h seqan-library-2.4.0/include/seqan/index/find2_index_multi.h seqan-library-2.4.0/include/seqan/index/index_shims.h seqan-library-2.4.0/include/seqan/index/index_fm_sparse_string.h seqan-library-2.4.0/include/seqan/index/index_qgram_openaddressing.h seqan-library-2.4.0/include/seqan/index/index_qgram_bucketrefinement.h seqan-library-2.4.0/include/seqan/index/index_sa_stree.h seqan-library-2.4.0/include/seqan/realign/ seqan-library-2.4.0/include/seqan/realign/realign_base.h seqan-library-2.4.0/include/seqan/realign/realign_helper_functions.h seqan-library-2.4.0/include/seqan/random/ seqan-library-2.4.0/include/seqan/random/random_base.h seqan-library-2.4.0/include/seqan/random/random_util.h seqan-library-2.4.0/include/seqan/random/random_beta.h seqan-library-2.4.0/include/seqan/bed_io/ seqan-library-2.4.0/include/seqan/bed_io/bed_file.h seqan-library-2.4.0/include/seqan/bed_io/bed_record.h seqan-library-2.4.0/include/seqan/bed_io/write_bed.h seqan-library-2.4.0/include/seqan/bed_io/read_bed.h seqan-library-2.4.0/include/seqan/find/ seqan-library-2.4.0/include/seqan/find/find_wumanber.h seqan-library-2.4.0/include/seqan/find/find_begin.h seqan-library-2.4.0/include/seqan/find/find_pattern_base.h seqan-library-2.4.0/include/seqan/find/find_hamming_simple.h seqan-library-2.4.0/include/seqan/find/find_multiple_bfam.h seqan-library-2.4.0/include/seqan/find/find_base.h seqan-library-2.4.0/include/seqan/find/find_ahocorasick.h seqan-library-2.4.0/include/seqan/find/find_horspool.h seqan-library-2.4.0/include/seqan/find/find_myers_ukkonen.h seqan-library-2.4.0/include/seqan/find/find_lambda.h seqan-library-2.4.0/include/seqan/find/find_shiftor.h seqan-library-2.4.0/include/seqan/find/find_multiple_shiftand.h seqan-library-2.4.0/include/seqan/find/find_bndm.h seqan-library-2.4.0/include/seqan/find/find_pex.h seqan-library-2.4.0/include/seqan/find/find_bom.h seqan-library-2.4.0/include/seqan/find/find_set_horspool.h seqan-library-2.4.0/include/seqan/find/find_abndm.h seqan-library-2.4.0/include/seqan/find/find_multi.h seqan-library-2.4.0/include/seqan/find/find_simple.h seqan-library-2.4.0/include/seqan/find/find_score.h seqan-library-2.4.0/include/seqan/find/find_wild_shiftand.h seqan-library-2.4.0/include/seqan/find/find_shiftand.h seqan-library-2.4.0/include/seqan/system.h seqan-library-2.4.0/include/seqan/reduced_aminoacid.h seqan-library-2.4.0/include/seqan/tabix_io/ seqan-library-2.4.0/include/seqan/tabix_io/tabix_index_tbi.h seqan-library-2.4.0/include/seqan/statistics.h seqan-library-2.4.0/include/seqan/seq_io/ seqan-library-2.4.0/include/seqan/seq_io/bam_sam.h seqan-library-2.4.0/include/seqan/seq_io/genomic_region.h seqan-library-2.4.0/include/seqan/seq_io/read_genbank.h seqan-library-2.4.0/include/seqan/seq_io/sequence_file.h seqan-library-2.4.0/include/seqan/seq_io/fasta_fastq.h seqan-library-2.4.0/include/seqan/seq_io/fai_index.h seqan-library-2.4.0/include/seqan/seq_io/read_embl.h seqan-library-2.4.0/include/seqan/graph_msa/ seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_distance.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_refinement.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_progressive.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_library.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_msa.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_io.h seqan-library-2.4.0/include/seqan/graph_msa/graph_align_tcoffee_kmer.h seqan-library-2.4.0/include/seqan/blast/ seqan-library-2.4.0/include/seqan/blast/blast_tabular.h seqan-library-2.4.0/include/seqan/blast/blast_tabular_lowlevel.h seqan-library-2.4.0/include/seqan/blast/blast_record.h seqan-library-2.4.0/include/seqan/blast/blast_base.h seqan-library-2.4.0/include/seqan/blast/blast_tabular_in.h seqan-library-2.4.0/include/seqan/blast/blast_statistics.h seqan-library-2.4.0/include/seqan/blast/blast_io_context.h seqan-library-2.4.0/include/seqan/blast/blast_report_out.h seqan-library-2.4.0/include/seqan/blast/blast_tabular_out.h seqan-library-2.4.0/include/seqan/journaled_string_tree.h seqan-library-2.4.0/include/seqan/find.h seqan-library-2.4.0/include/seqan/seq_io.h seqan-library-2.4.0/include/seqan/align/ seqan-library-2.4.0/include/seqan/align/align_interface_wrapper.h seqan-library-2.4.0/include/seqan/align/dp_matrix_navigator_score_matrix.h seqan-library-2.4.0/include/seqan/align/dp_formula.h seqan-library-2.4.0/include/seqan/align/global_alignment_specialized.h seqan-library-2.4.0/include/seqan/align/dp_traceback_adaptor.h seqan-library-2.4.0/include/seqan/align/alignment_algorithm_tags.h seqan-library-2.4.0/include/seqan/align/dp_trace_segment.h seqan-library-2.4.0/include/seqan/align/global_alignment_banded.h seqan-library-2.4.0/include/seqan/align/align_traceback.h seqan-library-2.4.0/include/seqan/align/local_alignment_unbanded.h seqan-library-2.4.0/include/seqan/align/dp_algorithm_impl.h seqan-library-2.4.0/include/seqan/align/dp_matrix_sparse.h seqan-library-2.4.0/include/seqan/align/evaluate_alignment.h seqan-library-2.4.0/include/seqan/align/global_alignment_hirschberg_impl.h seqan-library-2.4.0/include/seqan/align/gaps_iterator_anchor.h seqan-library-2.4.0/include/seqan/align/dp_matrix_navigator_trace_matrix.h seqan-library-2.4.0/include/seqan/align/align_metafunctions.h seqan-library-2.4.0/include/seqan/align/dp_formula_linear.h seqan-library-2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h seqan-library-2.4.0/include/seqan/align/gaps_iterator_array.h seqan-library-2.4.0/include/seqan/align/dp_band.h seqan-library-2.4.0/include/seqan/align/dp_setup.h seqan-library-2.4.0/include/seqan/align/dp_cell.h seqan-library-2.4.0/include/seqan/align/dp_align_simd_helper.h seqan-library-2.4.0/include/seqan/align/dp_cell_dynamic.h seqan-library-2.4.0/include/seqan/align/dp_profile.h seqan-library-2.4.0/include/seqan/align/global_alignment_myers_impl.h seqan-library-2.4.0/include/seqan/align/dp_matrix.h seqan-library-2.4.0/include/seqan/align/dp_cell_affine.h seqan-library-2.4.0/include/seqan/align/gaps_array.h seqan-library-2.4.0/include/seqan/align/fragment.h seqan-library-2.4.0/include/seqan/align/align_base.h seqan-library-2.4.0/include/seqan/align/dp_traceback_impl.h seqan-library-2.4.0/include/seqan/align/local_alignment_enumeration.h seqan-library-2.4.0/include/seqan/align/gaps_base.h seqan-library-2.4.0/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h seqan-library-2.4.0/include/seqan/align/local_alignment_enumeration_banded.h seqan-library-2.4.0/include/seqan/align/alignment_operations.h seqan-library-2.4.0/include/seqan/align/dp_formula_affine.h seqan-library-2.4.0/include/seqan/align/matrix_base.h seqan-library-2.4.0/include/seqan/align/local_alignment_waterman_eggert_impl.h seqan-library-2.4.0/include/seqan/align/dp_scout.h seqan-library-2.4.0/include/seqan/align/dp_matrix_navigator.h seqan-library-2.4.0/include/seqan/align/gaps_anchor.h seqan-library-2.4.0/include/seqan/align/dp_formula_dynamic.h seqan-library-2.4.0/include/seqan/align/dp_scout_simd.h seqan-library-2.4.0/include/seqan/align/align_cols.h seqan-library-2.4.0/include/seqan/align/aligned_sequence_concept.h seqan-library-2.4.0/include/seqan/align/local_alignment_enumeration_unbanded.h seqan-library-2.4.0/include/seqan/align/dp_meta_info.h seqan-library-2.4.0/include/seqan/align/gapped_value_type.h seqan-library-2.4.0/include/seqan/align/global_alignment_myers_hirschberg_impl.h seqan-library-2.4.0/include/seqan/align/local_alignment_banded.h seqan-library-2.4.0/include/seqan/align/align_iterator_base.h seqan-library-2.4.0/include/seqan/align/align_config.h seqan-library-2.4.0/include/seqan/align/gaps_iterator_base.h seqan-library-2.4.0/include/seqan/align/dp_context.h seqan-library-2.4.0/include/seqan/align/gap_anchor.h seqan-library-2.4.0/include/seqan/align/dp_cell_linear.h seqan-library-2.4.0/include/seqan/align/global_alignment_unbanded.h seqan-library-2.4.0/include/seqan/file.h seqan-library-2.4.0/include/seqan/math.h seqan-library-2.4.0/include/seqan/platform.h seqan-library-2.4.0/include/seqan/simple_intervals_io.h seqan-library-2.4.0/include/seqan/graph_types.h seqan-library-2.4.0/include/seqan/bed_io.h seqan-library-2.4.0/include/seqan/ucsc_io.h seqan-library-2.4.0/include/seqan/arg_parse/ seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_option.h seqan-library-2.4.0/include/seqan/arg_parse/argument_parser.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_version_check.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_type_support.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_exceptions.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_argument.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_doc.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h seqan-library-2.4.0/include/seqan/arg_parse/xml_support.h seqan-library-2.4.0/include/seqan/arg_parse/arg_parse_parse.h seqan-library-2.4.0/include/seqan/arg_parse/tool_doc.h seqan-library-2.4.0/include/seqan/journaled_string_tree/ seqan-library-2.4.0/include/seqan/journaled_string_tree/jst_extension_myers_ukkonen.h seqan-library-2.4.0/include/seqan/journaled_string_tree/jst_extension_shiftand.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_base.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h seqan-library-2.4.0/include/seqan/journaled_string_tree/stack_observer.h seqan-library-2.4.0/include/seqan/journaled_string_tree/delta_store.h seqan-library-2.4.0/include/seqan/journaled_string_tree/jst_extension_horspool.h seqan-library-2.4.0/include/seqan/journaled_string_tree/delta_map_iterator.h seqan-library-2.4.0/include/seqan/journaled_string_tree/delta_map.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_impl.h seqan-library-2.4.0/include/seqan/journaled_string_tree/observable.h seqan-library-2.4.0/include/seqan/journaled_string_tree/delta_map_entry.h seqan-library-2.4.0/include/seqan/journaled_string_tree/jst_extension_shiftor.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h seqan-library-2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h seqan-library-2.4.0/include/seqan/journaled_string_tree/jst_extension_base.h seqan-library-2.4.0/include/seqan/modifier.h seqan-library-2.4.0/include/seqan/bam_io/ seqan-library-2.4.0/include/seqan/bam_io/cigar.h seqan-library-2.4.0/include/seqan/bam_io/bam_header_record.h seqan-library-2.4.0/include/seqan/bam_io/bam_tags_dict.h seqan-library-2.4.0/include/seqan/bam_io/bam_scanner_cache.h seqan-library-2.4.0/include/seqan/bam_io/read_bam.h seqan-library-2.4.0/include/seqan/bam_io/bam_io_context.h seqan-library-2.4.0/include/seqan/bam_io/bam_sam_conversion.h seqan-library-2.4.0/include/seqan/bam_io/bam_alignment_record_util.h seqan-library-2.4.0/include/seqan/bam_io/read_sam.h seqan-library-2.4.0/include/seqan/bam_io/bam_alignment_record.h seqan-library-2.4.0/include/seqan/bam_io/write_bam.h seqan-library-2.4.0/include/seqan/bam_io/bam_index_bai.h seqan-library-2.4.0/include/seqan/bam_io/write_sam.h seqan-library-2.4.0/include/seqan/bam_io/bam_file.h seqan-library-2.4.0/include/seqan/ucsc_io/ seqan-library-2.4.0/include/seqan/ucsc_io/ucsc_record.h seqan-library-2.4.0/include/seqan/ucsc_io/ucsc_io.h seqan-library-2.4.0/include/seqan/ucsc_io/ucsc_file.h seqan-library-2.4.0/include/seqan/stream.h seqan-library-2.4.0/include/seqan/graph_msa.h seqan-library-2.4.0/include/seqan/translation/ seqan-library-2.4.0/include/seqan/translation/translation_tables.h seqan-library-2.4.0/include/seqan/translation/translation.h seqan-library-2.4.0/include/seqan/seeds.h seqan-library-2.4.0/include/seqan/rna_io/ seqan-library-2.4.0/include/seqan/rna_io/connect_read_write.h seqan-library-2.4.0/include/seqan/rna_io/ebpseq_read_write.h seqan-library-2.4.0/include/seqan/rna_io/bpseq_read_write.h seqan-library-2.4.0/include/seqan/rna_io/vienna_read_write.h seqan-library-2.4.0/include/seqan/rna_io/rna_io_context.h seqan-library-2.4.0/include/seqan/rna_io/rna_record.h seqan-library-2.4.0/include/seqan/rna_io/dot_bracket_read_write.h seqan-library-2.4.0/include/seqan/rna_io/stockholm_read_write.h seqan-library-2.4.0/include/seqan/rna_io/rna_header.h seqan-library-2.4.0/include/seqan/rna_io/rna_struct_file.h seqan-library-2.4.0/include/seqan/align_extend.h seqan-library-2.4.0/include/seqan/simd/ seqan-library-2.4.0/include/seqan/simd/simd_base_seqan_impl.h seqan-library-2.4.0/include/seqan/simd/simd_base_seqan_impl_avx512.h seqan-library-2.4.0/include/seqan/simd/simd_base_umesimd_impl.h seqan-library-2.4.0/include/seqan/simd/simd_base_seqan_impl_sse4.2.h seqan-library-2.4.0/include/seqan/simd/simd_base_seqan_impl_avx2.h seqan-library-2.4.0/include/seqan/simd/simd_base.h seqan-library-2.4.0/include/seqan/simd/simd_base_seqan_interface.h seqan-library-2.4.0/include/seqan/simd.h seqan-library-2.4.0/include/seqan/parse_lm.h seqan-library-2.4.0/include/seqan/parallel.h seqan-library-2.4.0/include/seqan/vcf_io/ seqan-library-2.4.0/include/seqan/vcf_io/vcf_header_record.h seqan-library-2.4.0/include/seqan/vcf_io/vcf_file.h seqan-library-2.4.0/include/seqan/vcf_io/read_vcf.h seqan-library-2.4.0/include/seqan/vcf_io/vcf_io_context.h seqan-library-2.4.0/include/seqan/vcf_io/vcf_record.h seqan-library-2.4.0/include/seqan/vcf_io/write_vcf.h seqan-library-2.4.0/include/seqan/vcf_io/vcf_header.h seqan-library-2.4.0/include/seqan/sequence_journaled/ seqan-library-2.4.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h seqan-library-2.4.0/include/seqan/sequence_journaled/journal_entries_sorted_array.h seqan-library-2.4.0/include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h seqan-library-2.4.0/include/seqan/sequence_journaled/sequence_journaled.h seqan-library-2.4.0/include/seqan/sequence_journaled/journal_entry.h seqan-library-2.4.0/include/seqan/map.h seqan-library-2.4.0/include/seqan/score.h seqan-library-2.4.0/include/seqan/map/ seqan-library-2.4.0/include/seqan/map/sumlist_skip.h seqan-library-2.4.0/include/seqan/map/map_skiplist.h seqan-library-2.4.0/include/seqan/map/map_chooser.h seqan-library-2.4.0/include/seqan/map/sumlist.h seqan-library-2.4.0/include/seqan/map/sumlist_mini.h seqan-library-2.4.0/include/seqan/map/map_vector.h seqan-library-2.4.0/include/seqan/map/map_base.h seqan-library-2.4.0/include/seqan/map/map_adapter_stl.h seqan-library-2.4.0/include/seqan/align_profile/ seqan-library-2.4.0/include/seqan/align_profile/add_to_profile.h seqan-library-2.4.0/include/seqan/align_profile/score_profile_seq.h seqan-library-2.4.0/include/seqan/roi_io/ seqan-library-2.4.0/include/seqan/roi_io/write_roi.h seqan-library-2.4.0/include/seqan/roi_io/roi_record.h seqan-library-2.4.0/include/seqan/roi_io/roi_io_context.h seqan-library-2.4.0/include/seqan/roi_io/roi_file.h seqan-library-2.4.0/include/seqan/roi_io/read_roi.h seqan-library-2.4.0/include/seqan/file/ seqan-library-2.4.0/include/seqan/file/file_base.h seqan-library-2.4.0/include/seqan/file/file_interface.h seqan-library-2.4.0/include/seqan/file/file_forwards.h seqan-library-2.4.0/include/seqan/file/file_cstyle.h seqan-library-2.4.0/include/seqan/file/string_mmap.h seqan-library-2.4.0/include/seqan/file/file_page.h seqan-library-2.4.0/include/seqan/file/file_mapping.h seqan-library-2.4.0/include/seqan/file/string_external.h seqan-library-2.4.0/include/seqan/version.h seqan-library-2.4.0/include/seqan/sequence.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/ seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h seqan-library-2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h seqan-library-2.4.0/include/seqan/store.h seqan-library-2.4.0/include/seqan/align_parallel.h seqan-library-2.4.0/include/seqan/journaled_set/ seqan-library-2.4.0/include/seqan/journaled_set/journal_alignment_interface.h seqan-library-2.4.0/include/seqan/journaled_set/journal_alignment_traceback_adaptor.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_join_config.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h seqan-library-2.4.0/include/seqan/journaled_set/score_biaffine.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_impl.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_join.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_base.h seqan-library-2.4.0/include/seqan/journaled_set/journaled_set_join_global_align_compact.h seqan-library-2.4.0/include/seqan/graph_algorithms.h seqan-library-2.4.0/include/seqan/math/ seqan-library-2.4.0/include/seqan/math/math_rational.h seqan-library-2.4.0/include/seqan/math/math_common_factor.h seqan-library-2.4.0/include/seqan/math/math_operators.h seqan-library-2.4.0/include/seqan/basic/ seqan-library-2.4.0/include/seqan/basic/basic_alphabet.h seqan-library-2.4.0/include/seqan/basic/alphabet_math.h seqan-library-2.4.0/include/seqan/basic/proxy_base.h seqan-library-2.4.0/include/seqan/basic/math_functions.h seqan-library-2.4.0/include/seqan/basic/basic_parallelism.h seqan-library-2.4.0/include/seqan/basic/holder_simple.h seqan-library-2.4.0/include/seqan/basic/basic_device.h seqan-library-2.4.0/include/seqan/basic/iterator_interface.h seqan-library-2.4.0/include/seqan/basic/basic_iterator.h seqan-library-2.4.0/include/seqan/basic/fundamental_comparison.h seqan-library-2.4.0/include/seqan/basic/hosted_type_interface.h seqan-library-2.4.0/include/seqan/basic/basic_container.h seqan-library-2.4.0/include/seqan/basic/holder_base.h seqan-library-2.4.0/include/seqan/basic/basic_math.h seqan-library-2.4.0/include/seqan/basic/alphabet_bio.h seqan-library-2.4.0/include/seqan/basic/iterator_concept.h seqan-library-2.4.0/include/seqan/basic/basic_functors.h seqan-library-2.4.0/include/seqan/basic/proxy_iterator.h seqan-library-2.4.0/include/seqan/basic/alphabet_adapt_builtins.h seqan-library-2.4.0/include/seqan/basic/test_system.h seqan-library-2.4.0/include/seqan/basic/basic_proxy.h seqan-library-2.4.0/include/seqan/basic/iterator_adapt_std.h seqan-library-2.4.0/include/seqan/basic/array_construct_destruct.h seqan-library-2.4.0/include/seqan/basic/basic_exception.h seqan-library-2.4.0/include/seqan/basic/basic_allocator.h seqan-library-2.4.0/include/seqan/basic/tuple_bit_compressed.h seqan-library-2.4.0/include/seqan/basic/fundamental_transport.h seqan-library-2.4.0/include/seqan/basic/iterator_counting.h seqan-library-2.4.0/include/seqan/basic/iterator_adaptor.h seqan-library-2.4.0/include/seqan/basic/pair_bit_compressed.h seqan-library-2.4.0/include/seqan/basic/iterator_base.h seqan-library-2.4.0/include/seqan/basic/allocator_multipool.h seqan-library-2.4.0/include/seqan/basic/profiling.h seqan-library-2.4.0/include/seqan/basic/basic_concept.h seqan-library-2.4.0/include/seqan/basic/volatile_ptr.h seqan-library-2.4.0/include/seqan/basic/allocator_interface.h seqan-library-2.4.0/include/seqan/basic/basic_view.h seqan-library-2.4.0/include/seqan/basic/alphabet_simple_type.h seqan-library-2.4.0/include/seqan/basic/concept_checking.h seqan-library-2.4.0/include/seqan/basic/basic_stream.h seqan-library-2.4.0/include/seqan/basic/alphabet_qualities.h seqan-library-2.4.0/include/seqan/basic/property_map_concept.h seqan-library-2.4.0/include/seqan/basic/pair_packed.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_type.h seqan-library-2.4.0/include/seqan/basic/iterator_zip.h seqan-library-2.4.0/include/seqan/basic/holder_tristate.h seqan-library-2.4.0/include/seqan/basic/boost_preprocessor_subset.h seqan-library-2.4.0/include/seqan/basic/alphabet_residue_funcs.h seqan-library-2.4.0/include/seqan/basic/allocator_simple.h seqan-library-2.4.0/include/seqan/basic/container_concept.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_enable_if.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_math.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_type_algebra.h seqan-library-2.4.0/include/seqan/basic/allocator_singlepool.h seqan-library-2.4.0/include/seqan/basic/alphabet_storage.h seqan-library-2.4.0/include/seqan/basic/fundamental_concepts.h seqan-library-2.4.0/include/seqan/basic/basic_aggregate.h seqan-library-2.4.0/include/seqan/basic/aggregate_concept.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_logic.h seqan-library-2.4.0/include/seqan/basic/alphabet_profile.h seqan-library-2.4.0/include/seqan/basic/builtin_functions.h seqan-library-2.4.0/include/seqan/basic/fundamental_metafunctions.h seqan-library-2.4.0/include/seqan/basic/basic_smart_pointer.h seqan-library-2.4.0/include/seqan/basic/metaprogramming_control.h seqan-library-2.4.0/include/seqan/basic/basic_type.h seqan-library-2.4.0/include/seqan/basic/iterator_position.h seqan-library-2.4.0/include/seqan/basic/debug_helper.h seqan-library-2.4.0/include/seqan/basic/triple_base.h seqan-library-2.4.0/include/seqan/basic/basic_metaprogramming.h seqan-library-2.4.0/include/seqan/basic/pair_base.h seqan-library-2.4.0/include/seqan/basic/alphabet_concept.h seqan-library-2.4.0/include/seqan/basic/debug_test_system.h seqan-library-2.4.0/include/seqan/basic/alphabet_residue_tabs.h seqan-library-2.4.0/include/seqan/basic/basic_debug.h seqan-library-2.4.0/include/seqan/basic/fundamental_chunking.h seqan-library-2.4.0/include/seqan/basic/fundamental_tags.h seqan-library-2.4.0/include/seqan/basic/allocator_chunkpool.h seqan-library-2.4.0/include/seqan/basic/basic_tangle.h seqan-library-2.4.0/include/seqan/basic/macro_deprecated.h seqan-library-2.4.0/include/seqan/basic/allocator_to_std.h seqan-library-2.4.0/include/seqan/basic/triple_packed.h seqan-library-2.4.0/include/seqan/basic/iterator_range.h seqan-library-2.4.0/include/seqan/basic/iterator_adapt_pointer.h seqan-library-2.4.0/include/seqan/basic/tuple_base.h seqan-library-2.4.0/include/seqan/basic/fundamental_conversion.h seqan-library-2.4.0/include/seqan/basic/math_log_space_value.h seqan-library-2.4.0/include/seqan/basic/alphabet_residue.h seqan-library-2.4.0/include/seqan/basic/basic_fundamental.h seqan-library-2.4.0/include/seqan/translation.h seqan-library-2.4.0/include/seqan/graph_align.h seqan-library-2.4.0/include/seqan/tabix_io.h seqan-library-2.4.0/include/seqan/random.h seqan-library-2.4.0/include/seqan/basic.h seqan-library-2.4.0/include/seqan/gff_io.h seqan-library-2.4.0/include/seqan/score/ seqan-library-2.4.0/include/seqan/score/score_simple.h seqan-library-2.4.0/include/seqan/score/score_simd_wrapper.h seqan-library-2.4.0/include/seqan/score/score_base.h seqan-library-2.4.0/include/seqan/score/score_matrix_dyn.h seqan-library-2.4.0/include/seqan/score/score_matrix_io.h seqan-library-2.4.0/include/seqan/score/score_matrix_data.h seqan-library-2.4.0/include/seqan/score/score_edit.h seqan-library-2.4.0/include/seqan/score/score_matrix.h seqan-library-2.4.0/include/seqan/sequence_journaled.h seqan-library-2.4.0/include/seqan/rna_io.h seqan-library-2.4.0/include/seqan/simple_intervals_io/ seqan-library-2.4.0/include/seqan/simple_intervals_io/simple_intervals_io.h seqan-library-2.4.0/include/seqan/simple_intervals_io/simple_intervals_file.h seqan-library-2.4.0/include/seqan/graph_align/ seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_fragment.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_inexact.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_align.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h seqan-library-2.4.0/include/seqan/graph_align/graph_impl_align.h seqan-library-2.4.0/include/seqan/graph_align/graph_impl_align_adapt.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_scoring.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h seqan-library-2.4.0/include/seqan/graph_align/graph_algorithm_refine_annotation.h seqan-library-2.4.0/include/seqan/graph_algorithms/ seqan-library-2.4.0/include/seqan/graph_algorithms/strongly_connected_compnents.h seqan-library-2.4.0/include/seqan/graph_algorithms/weakly_connected_components.h seqan-library-2.4.0/include/seqan/graph_algorithms/transitive_closure.h seqan-library-2.4.0/include/seqan/graph_algorithms/breadth_first_search.h seqan-library-2.4.0/include/seqan/graph_algorithms/dijkstra.h seqan-library-2.4.0/include/seqan/graph_algorithms/topological_sort.h seqan-library-2.4.0/include/seqan/graph_algorithms/kruskal.h seqan-library-2.4.0/include/seqan/graph_algorithms/maximum_weighted_matching.h seqan-library-2.4.0/include/seqan/graph_algorithms/graph_algorithm_hmm.h seqan-library-2.4.0/include/seqan/graph_algorithms/bellman_ford.h seqan-library-2.4.0/include/seqan/graph_algorithms/floyd_warshall.h seqan-library-2.4.0/include/seqan/graph_algorithms/prim.h seqan-library-2.4.0/include/seqan/graph_algorithms/path_growing.h seqan-library-2.4.0/include/seqan/graph_algorithms/bipartite_matching.h seqan-library-2.4.0/include/seqan/graph_algorithms/connected_components.h seqan-library-2.4.0/include/seqan/graph_algorithms/depth_first_search.h seqan-library-2.4.0/include/seqan/graph_algorithms/ford_fulkerson.h seqan-library-2.4.0/include/seqan/graph_algorithms/weighted_bipartite_matching.h seqan-library-2.4.0/include/seqan/graph_algorithms/single_source_shortest_path.h seqan-library-2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h seqan-library-2.4.0/include/seqan/graph_algorithms/all_pairs_shortest_path.h seqan-library-2.4.0/include/seqan/graph_algorithms/graph_algorithm_lis_his.h seqan-library-2.4.0/include/seqan/arg_parse.h seqan-library-2.4.0/include/seqan/align_split/ seqan-library-2.4.0/include/seqan/align_split/dp_scout_split.h seqan-library-2.4.0/include/seqan/align_split/align_split_interface.h seqan-library-2.4.0/include/seqan/pipe.h seqan-library-2.4.0/include/seqan/bam_io.h seqan-library-2.4.0/include/seqan/align_profile.h seqan-library-2.4.0/include/seqan/seeds/ seqan-library-2.4.0/include/seqan/seeds/banded_chain_alignment_profile.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_set_non_scored.h seqan-library-2.4.0/include/seqan/seeds/banded_chain_alignment_traceback.h seqan-library-2.4.0/include/seqan/seeds/basic_iter_indirect.h seqan-library-2.4.0/include/seqan/seeds/seeds_extension.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_set_base.h seqan-library-2.4.0/include/seqan/seeds/seeds_global_chaining.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_diagonal.h seqan-library-2.4.0/include/seqan/seeds/banded_chain_alignment_scout.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_set_scored.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_simple.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_base.h seqan-library-2.4.0/include/seqan/seeds/banded_chain_alignment.h seqan-library-2.4.0/include/seqan/seeds/seeds_global_chaining_base.h seqan-library-2.4.0/include/seqan/seeds/seeds_base.h seqan-library-2.4.0/include/seqan/seeds/seeds_global_chaining_gusfield.h seqan-library-2.4.0/include/seqan/seeds/seeds_combination.h seqan-library-2.4.0/include/seqan/seeds/banded_chain_alignment_impl.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_chained.h seqan-library-2.4.0/include/seqan/seeds/seeds_seed_set_unordered.h seqan-library-2.4.0/include/seqan/align_parallel/ seqan-library-2.4.0/include/seqan/align_parallel/dp_parallel_scout.h seqan-library-2.4.0/include/seqan/align_parallel/dp_parallel_scout_simd.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_alignment_scheduler.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_alignment_executor.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_alignment_result.h seqan-library-2.4.0/include/seqan/align_parallel/dp_settings.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task_event.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task_executor.h seqan-library-2.4.0/include/seqan/align_parallel/dp_parallel_execution_policies.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task_scheduler.h seqan-library-2.4.0/include/seqan/align_parallel/dp_traits.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task_queue.h seqan-library-2.4.0/include/seqan/align_parallel/dp_kernel_adaptor.h seqan-library-2.4.0/include/seqan/align_parallel/parallel_align_interface.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task_util.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_task.h seqan-library-2.4.0/include/seqan/align_parallel/wavefront_alignment_task.h seqan-library-2.4.0/include/seqan/align_parallel/async_wave_execution_interface.h seqan-library-2.4.0/include/seqan/realign.h seqan-library-2.4.0/include/seqan/consensus.h seqan-library-2.4.0/include/seqan/sequence/ seqan-library-2.4.0/include/seqan/sequence/adapt_stl_container.h seqan-library-2.4.0/include/seqan/sequence/string_set_owner.h seqan-library-2.4.0/include/seqan/sequence/string_base.h seqan-library-2.4.0/include/seqan/sequence/string_set_dependent_tight.h seqan-library-2.4.0/include/seqan/sequence/sequence_shortcuts.h seqan-library-2.4.0/include/seqan/sequence/iter_concat_virtual.h seqan-library-2.4.0/include/seqan/sequence/segment_prefix.h seqan-library-2.4.0/include/seqan/sequence/segment_utils.h seqan-library-2.4.0/include/seqan/sequence/string_set_view.h seqan-library-2.4.0/include/seqan/sequence/string_array.h seqan-library-2.4.0/include/seqan/sequence/string_alloc.h seqan-library-2.4.0/include/seqan/sequence/segment_infix.h seqan-library-2.4.0/include/seqan/sequence/sequence_forwards.h seqan-library-2.4.0/include/seqan/sequence/sequence_interface.h seqan-library-2.4.0/include/seqan/sequence/string_packed_old.h seqan-library-2.4.0/include/seqan/sequence/sequence_concatenator.h seqan-library-2.4.0/include/seqan/sequence/string_block.h seqan-library-2.4.0/include/seqan/sequence/string_packed.h seqan-library-2.4.0/include/seqan/sequence/string_set_dependent_generous.h seqan-library-2.4.0/include/seqan/sequence/string_set_concat_direct.h seqan-library-2.4.0/include/seqan/sequence/string_set_base.h seqan-library-2.4.0/include/seqan/sequence/container_view.h seqan-library-2.4.0/include/seqan/sequence/container_view_zip.h seqan-library-2.4.0/include/seqan/sequence/sequence_lexical.h seqan-library-2.4.0/include/seqan/sequence/string_cstyle.h seqan-library-2.4.0/include/seqan/sequence/segment_suffix.h seqan-library-2.4.0/include/seqan/sequence/adapt_array_pointer.h seqan-library-2.4.0/include/seqan/sequence/segment_base.h seqan-library-2.4.0/include/seqan/sequence/string_set_segment.h seqan-library-2.4.0/include/seqan/graph_types/ seqan-library-2.4.0/include/seqan/graph_types/graph_edgestump.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_undirected.h seqan-library-2.4.0/include/seqan/graph_types/graph_interface.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_dfs.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_outedge.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_automaton.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_bfs.h seqan-library-2.4.0/include/seqan/graph_types/graph_idmanager.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_tree.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_vertex.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_edge.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_trie.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_hmm.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_directed.h seqan-library-2.4.0/include/seqan/graph_types/property_map_internal_pointer.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_wordgraph.h seqan-library-2.4.0/include/seqan/graph_types/graph_drawing.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator_adjacency.h seqan-library-2.4.0/include/seqan/graph_types/property_map_generic.h seqan-library-2.4.0/include/seqan/graph_types/graph_impl_oracle.h seqan-library-2.4.0/include/seqan/graph_types/graph_utility_parsing.h seqan-library-2.4.0/include/seqan/graph_types/graph_base.h seqan-library-2.4.0/include/seqan/graph_types/graph_iterator.h seqan-library-2.4.0/include/seqan/graph_types/property_map_internal.h seqan-library-2.4.0/include/seqan/pipe/ seqan-library-2.4.0/include/seqan/pipe/pool_base.h seqan-library-2.4.0/include/seqan/pipe/pipe_namer.h seqan-library-2.4.0/include/seqan/pipe/pipe_iterator.h seqan-library-2.4.0/include/seqan/pipe/pipe_joiner.h seqan-library-2.4.0/include/seqan/pipe/pipe_edit_environment.h seqan-library-2.4.0/include/seqan/pipe/pipe_shifter.h seqan-library-2.4.0/include/seqan/pipe/pool_sorter.h seqan-library-2.4.0/include/seqan/pipe/pipe_tupler.h seqan-library-2.4.0/include/seqan/pipe/pipe_base.h seqan-library-2.4.0/include/seqan/pipe/pool_mapper.h seqan-library-2.4.0/include/seqan/pipe/pipe_caster.h seqan-library-2.4.0/include/seqan/pipe/pipe_echoer.h seqan-library-2.4.0/include/seqan/pipe/pipe_sampler.h seqan-library-2.4.0/include/seqan/pipe/pipe_source.h seqan-library-2.4.0/include/seqan/pipe/pipe_filter.h seqan-library-2.4.0/include/seqan/pipe/pipe_counter.h seqan-library-2.4.0/include/seqan/align_extend/ seqan-library-2.4.0/include/seqan/align_extend/align_extend.h seqan-library-2.4.0/include/seqan/align_extend/dp_scout_xdrop.h seqan-library-2.4.0/include/seqan/align_extend/align_extend_base.h seqan-library-2.4.0/include/seqan/modifier/ seqan-library-2.4.0/include/seqan/modifier/modifier_view.h seqan-library-2.4.0/include/seqan/modifier/modifier_iterator.h seqan-library-2.4.0/include/seqan/modifier/modifier_padding.h seqan-library-2.4.0/include/seqan/modifier/modifier_reverse.h seqan-library-2.4.0/include/seqan/modifier/modifier_position.h seqan-library-2.4.0/include/seqan/modifier/modifier_alphabet.h seqan-library-2.4.0/include/seqan/modifier/modifier_string.h seqan-library-2.4.0/include/seqan/modifier/modifier_cyclic_shape.h seqan-library-2.4.0/include/seqan/modifier/modifier_functors.h seqan-library-2.4.0/include/seqan/modifier/cyclic_shape.h seqan-library-2.4.0/include/seqan/modifier/modifier_alphabet_expansion.h seqan-library-2.4.0/include/seqan/modifier/modifier_shortcuts.h seqan-library-2.4.0/include/seqan/system/ seqan-library-2.4.0/include/seqan/system/system_base.h seqan-library-2.4.0/include/seqan/system/file_directory.h seqan-library-2.4.0/include/seqan/system/file_forwards.h seqan-library-2.4.0/include/seqan/system/system_event_win.h seqan-library-2.4.0/include/seqan/system/file_async.h seqan-library-2.4.0/include/seqan/system/file_sync.h seqan-library-2.4.0/include/seqan/system/system_forwards.h seqan-library-2.4.0/include/seqan/vcf_io.h seqan-library-2.4.0/include/seqan/gff_io/ seqan-library-2.4.0/include/seqan/gff_io/gff_io_base.h seqan-library-2.4.0/include/seqan/gff_io/gff_file.h seqan-library-2.4.0/include/seqan/stream/ seqan-library-2.4.0/include/seqan/stream/lexical_cast.h seqan-library-2.4.0/include/seqan/stream/stream_compressor.h seqan-library-2.4.0/include/seqan/stream/iostream_zip.h seqan-library-2.4.0/include/seqan/stream/buffered_stream.h seqan-library-2.4.0/include/seqan/stream/formatted_file.h seqan-library-2.4.0/include/seqan/stream/iostream_bzip2.h seqan-library-2.4.0/include/seqan/stream/tokenization.h seqan-library-2.4.0/include/seqan/stream/adapt_ios.h seqan-library-2.4.0/include/seqan/stream/guess_format.h seqan-library-2.4.0/include/seqan/stream/iostream_zutil.h seqan-library-2.4.0/include/seqan/stream/iter_stream.h seqan-library-2.4.0/include/seqan/stream/stream_base.h seqan-library-2.4.0/include/seqan/stream/file_stream.h seqan-library-2.4.0/include/seqan/stream/virtual_stream.h seqan-library-2.4.0/include/seqan/stream/iostream_bgzf.h seqan-library-2.4.0/include/seqan/stream/iostream_bzip2_impl.h seqan-library-2.4.0/include/seqan/stream/iostream_zip_impl.h seqan-library-2.4.0/include/seqan/store/ seqan-library-2.4.0/include/seqan/store/store_io_sam.h seqan-library-2.4.0/include/seqan/store/store_annotation.h seqan-library-2.4.0/include/seqan/store/store_all.h seqan-library-2.4.0/include/seqan/store/store_read.h seqan-library-2.4.0/include/seqan/store/store_io.h seqan-library-2.4.0/include/seqan/store/store_io_gff.h seqan-library-2.4.0/include/seqan/store/store_io_ucsc.h seqan-library-2.4.0/include/seqan/store/store_align.h seqan-library-2.4.0/include/seqan/store/store_contig.h seqan-library-2.4.0/include/seqan/store/store_base.h seqan-library-2.4.0/include/seqan/store/store_align_intervals.h seqan-library-2.4.0/include/seqan/store/store_matepair.h seqan-library-2.4.0/include/seqan/store/store_intervaltree.h seqan-library-2.4.0/include/seqan/store/store_library.h seqan-library-2.4.0/include/seqan/blast.h seqan-library-2.4.0/include/seqan/parse_lm/ seqan-library-2.4.0/include/seqan/parse_lm/local_match_store.h seqan-library-2.4.0/include/seqan/parse_lm/parse_lastz_general.h seqan-library-2.4.0/include/seqan/parse_lm/parse_blastn_tabular.h seqan-library-2.4.0/include/seqan/parse_lm/parse_stellar_gff.h seqan-library-2.4.0/include/seqan/parallel/ seqan-library-2.4.0/include/seqan/parallel/parallel_macros.h seqan-library-2.4.0/include/seqan/parallel/parallel_queue.h seqan-library-2.4.0/include/seqan/parallel/parallel_algorithms.h seqan-library-2.4.0/include/seqan/parallel/parallel_atomic_misc.h seqan-library-2.4.0/include/seqan/parallel/parallel_sequence.h seqan-library-2.4.0/include/seqan/parallel/parallel_serializer.h seqan-library-2.4.0/include/seqan/parallel/parallel_splitting.h seqan-library-2.4.0/include/seqan/parallel/parallel_queue_suspendable.h seqan-library-2.4.0/include/seqan/parallel/parallel_tags.h seqan-library-2.4.0/include/seqan/parallel/parallel_resource_pool.h seqan-library-2.4.0/include/seqan/parallel/enumerable_thread_local_iterator.h seqan-library-2.4.0/include/seqan/parallel/parallel_thread_pool.h seqan-library-2.4.0/include/seqan/parallel/parallel_lock.h seqan-library-2.4.0/include/seqan/parallel/parallel_atomic_primitives.h seqan-library-2.4.0/include/seqan/parallel/enumerable_thread_local.h seqan-library-2.4.0/include/seqan/statistics/ seqan-library-2.4.0/include/seqan/statistics/statistics_base.h seqan-library-2.4.0/include/seqan/statistics/statistics_markov_model.h seqan-library-2.4.0/include/seqan/consensus/ seqan-library-2.4.0/include/seqan/consensus/consensus_builder.h seqan-library-2.4.0/include/seqan/consensus/consensus_realign.h seqan-library-2.4.0/include/seqan/consensus/overlapper.h seqan-library-2.4.0/include/seqan/consensus/consensus_library.h seqan-library-2.4.0/include/seqan/consensus/consensus_alignment_options.h seqan-library-2.4.0/include/seqan/consensus/consensus_score.h seqan-library-2.4.0/include/seqan/consensus/consensus_aligner.h seqan-library-2.4.0/include/seqan/consensus/overlap_info_computation.h seqan-library-2.4.0/include/seqan/consensus/consensus_aligner_interface.h seqan-library-2.4.0/include/seqan/consensus/consensus_base.h seqan-library-2.4.0/include/seqan/alignment_free/ seqan-library-2.4.0/include/seqan/alignment_free/alignment_free_base.h seqan-library-2.4.0/include/seqan/alignment_free/af_n2.h seqan-library-2.4.0/include/seqan/alignment_free/af_d2.h seqan-library-2.4.0/include/seqan/alignment_free/af_d2z.h seqan-library-2.4.0/include/seqan/alignment_free/kmer_functions.h seqan-library-2.4.0/include/seqan/alignment_free/alignment_free_comparison.h seqan-library-2.4.0/include/seqan/alignment_free/af_d2star.h seqan-library-2.4.0/include/seqan/align_split.h seqan-library-2.4.0/include/seqan/roi_io.h seqan-library-2.4.0/include/seqan/align.h seqan-library-2.4.0/include/seqan/alignment_free.h seqan-library-2.4.0/include/seqan/index.h -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX14 -- Performing Test COMPILER_SUPPORTS_CXX14 - Success -- Flexbar 32 bit architecture -- Found ZLIB: /usr/lib/libz.so (found version "1.2.12") -- Found BZip2: /usr/lib/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Configuring done -- Generating done -- Build files have been written to: /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/build [ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o In file included from /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.h:16, from /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.cpp:24: /usr/include/tbb/task_scheduler_init.h:21:154: note: ‘#pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.’ 21 | #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ In file included from /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.cpp:24: /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.h: In function ‘void startProcessing(Options&)’: /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.h:243:23: warning: ‘pipeline’ is deprecated: tbb::pipeline is deprecated, use tbb::parallel_pipeline [-Wdeprecated-declarations] 243 | tbb::pipeline pipe; | ^~~~ In file included from /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.h:15, from /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0/src/Flexbar.cpp:24: /usr/include/tbb/pipeline.h:235:87: note: declared here 235 | class __TBB_DEPRECATED_MSG("tbb::pipeline is deprecated, use tbb::parallel_pipeline") pipeline { | ^~~~~~~~ [100%] Linking CXX executable ../flexbar [100%] Built target flexbar Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0-i586-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/flexbar usr/doc/ usr/doc/flexbar-3.5.0/ usr/doc/flexbar-3.5.0/LICENSE.md usr/doc/flexbar-3.5.0/README.md usr/doc/flexbar-3.5.0/flexbar.SlackBuild Slackware package /usr/src/slapt-src/academic/flexbar/flexbar-3.5.0-i586-1salix15.0.txz created. Installing package flexbar-3.5.0-i586-1salix15.0... | flexbar (barcode and adapter removal) | | The program Flexbar preprocesses high-throughput sequencing data | efficiently. It demultiplexes barcoded runs and removes adapter | sequences. Moreover, trimming and filtering features are provided. | Flexbar increases read mapping rates and improves genome as well as | transcriptome assemblies. It supports next-generation sequencing data | in fasta and fastq format, e.g. from Roche 454 and the Illumina | platform. | | https://github.com/seqan/flexbar | |