The following packages will be installed: genometools Fetching README... 0%100%100%100%100%100%Done Fetching References... 0%100%100%100%100%100%Done Fetching gcc10.patch... 0%100%100%100%100%100%Done Fetching genometools.SlackBuild... 0%100%100%100%100%100%Done Fetching genometools.info... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done genometools-1.6.1/ genometools-1.6.1/.github/ genometools-1.6.1/.github/ISSUE_TEMPLATE.md genometools-1.6.1/.github/PULL_REQUEST_TEMPLATE.md genometools-1.6.1/.gitignore genometools-1.6.1/.travis.yml genometools-1.6.1/CHANGELOG genometools-1.6.1/CONTRIBUTORS genometools-1.6.1/INSTALL genometools-1.6.1/LICENSE genometools-1.6.1/Makefile genometools-1.6.1/README genometools-1.6.1/README.md genometools-1.6.1/VERSION genometools-1.6.1/doc/ genometools-1.6.1/doc/RELEASE genometools-1.6.1/doc/devguide/ genometools-1.6.1/doc/devguide/.gitignore genometools-1.6.1/doc/devguide/Makefile genometools-1.6.1/doc/devguide/devguide.tex genometools-1.6.1/doc/devguide/mlayout.pdf genometools-1.6.1/doc/devguide/mlayout.svg genometools-1.6.1/doc/dist_readme.txt genometools-1.6.1/doc/lgpl.txt genometools-1.6.1/doc/license.template genometools-1.6.1/doc/manuals/ genometools-1.6.1/doc/manuals/.gitignore genometools-1.6.1/doc/manuals/.ispell_american genometools-1.6.1/doc/manuals/.ispell_british genometools-1.6.1/doc/manuals/Makefile genometools-1.6.1/doc/manuals/annotationsketch.tex genometools-1.6.1/doc/manuals/execcommand.pl genometools-1.6.1/doc/manuals/findemptyoutfiles.sh genometools-1.6.1/doc/manuals/genomediff.tex genometools-1.6.1/doc/manuals/genomediff.tex.latexmain genometools-1.6.1/doc/manuals/gtmanuals.bib genometools-1.6.1/doc/manuals/hop.tex genometools-1.6.1/doc/manuals/ltrdigest.tex genometools-1.6.1/doc/manuals/ltrharvest.tex genometools-1.6.1/doc/manuals/matstat.tex genometools-1.6.1/doc/manuals/mgth.tex genometools-1.6.1/doc/manuals/optionman.sty genometools-1.6.1/doc/manuals/output/ genometools-1.6.1/doc/manuals/output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out genometools-1.6.1/doc/manuals/output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out genometools-1.6.1/doc/manuals/output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out genometools-1.6.1/doc/manuals/output/gt-tagerator--q-Q1.gz--pck-pck-human--e-2.out genometools-1.6.1/doc/manuals/output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out genometools-1.6.1/doc/manuals/output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out genometools-1.6.1/doc/manuals/output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out genometools-1.6.1/doc/manuals/output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out genometools-1.6.1/doc/manuals/output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out genometools-1.6.1/doc/manuals/output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out genometools-1.6.1/doc/manuals/packedindex.tex genometools-1.6.1/doc/manuals/readjoiner.tex genometools-1.6.1/doc/manuals/repfind.tex genometools-1.6.1/doc/manuals/tagerator.tex genometools-1.6.1/doc/manuals/tallymer.tex genometools-1.6.1/doc/manuals/uniquesub.tex genometools-1.6.1/doc/notes/ genometools-1.6.1/doc/notes/GFF2 genometools-1.6.1/doc/notes/GO.format.obo-1_2.shtml genometools-1.6.1/doc/notes/GO.xrf_abbs_spec genometools-1.6.1/doc/notes/GTF22.html genometools-1.6.1/doc/notes/css/ genometools-1.6.1/doc/notes/css/so_style.css genometools-1.6.1/doc/notes/gff3.shtml genometools-1.6.1/doc/notes/img/ genometools-1.6.1/doc/notes/img/figure1.png genometools-1.6.1/doc/notes/img/figure2.png genometools-1.6.1/doc/notes/img/figure3.png genometools-1.6.1/doc/release-mail-template.txt genometools-1.6.1/gtdata/ genometools-1.6.1/gtdata/doc/ genometools-1.6.1/gtdata/doc/cds.lua genometools-1.6.1/gtdata/doc/chseqids.lua genometools-1.6.1/gtdata/doc/csa.lua genometools-1.6.1/gtdata/doc/csa_example_consensus_spliced_alignments.gff3 genometools-1.6.1/gtdata/doc/csa_example_spliced_alignments.gff3 genometools-1.6.1/gtdata/doc/eval.lua genometools-1.6.1/gtdata/doc/extractfeat.lua genometools-1.6.1/gtdata/doc/extractseq.lua genometools-1.6.1/gtdata/doc/fingerprint.lua genometools-1.6.1/gtdata/doc/genomediff.lua genometools-1.6.1/gtdata/doc/gff3.lua genometools-1.6.1/gtdata/doc/gt.lua genometools-1.6.1/gtdata/doc/hop.lua genometools-1.6.1/gtdata/doc/id_to_md5.lua genometools-1.6.1/gtdata/doc/luafilter.lua genometools-1.6.1/gtdata/doc/luafilter_function.lua genometools-1.6.1/gtdata/doc/magicmatch.lua genometools-1.6.1/gtdata/doc/mutate.lua genometools-1.6.1/gtdata/doc/readjoiner.lua genometools-1.6.1/gtdata/doc/regionmapping.lua genometools-1.6.1/gtdata/doc/regionmapping_function.lua genometools-1.6.1/gtdata/doc/regionmapping_table.lua genometools-1.6.1/gtdata/doc/select.lua genometools-1.6.1/gtdata/doc/seqmutate.lua genometools-1.6.1/gtdata/doc/sequniq.lua genometools-1.6.1/gtdata/doc/shredder.lua genometools-1.6.1/gtdata/doc/snpper.lua genometools-1.6.1/gtdata/doc/splicesiteinfo.lua genometools-1.6.1/gtdata/doc/uniq.lua genometools-1.6.1/gtdata/modules/ genometools-1.6.1/gtdata/modules/external/ genometools-1.6.1/gtdata/modules/external/cgilua/ genometools-1.6.1/gtdata/modules/external/cgilua/authentication.lua genometools-1.6.1/gtdata/modules/external/cgilua/cgilua.lua genometools-1.6.1/gtdata/modules/external/cgilua/cookies.lua genometools-1.6.1/gtdata/modules/external/cgilua/dispatcher.lua genometools-1.6.1/gtdata/modules/external/cgilua/loader.lua genometools-1.6.1/gtdata/modules/external/cgilua/lp.lua genometools-1.6.1/gtdata/modules/external/cgilua/mime.lua genometools-1.6.1/gtdata/modules/external/cgilua/post.lua genometools-1.6.1/gtdata/modules/external/cgilua/readuntil.lua genometools-1.6.1/gtdata/modules/external/cgilua/serialize.lua genometools-1.6.1/gtdata/modules/external/cgilua/session.lua genometools-1.6.1/gtdata/modules/external/cgilua/urlcode.lua genometools-1.6.1/gtdata/modules/external/des56.lua genometools-1.6.1/gtdata/modules/external/md5.lua genometools-1.6.1/gtdata/modules/external/re.lua genometools-1.6.1/gtdata/modules/fileutils.lua genometools-1.6.1/gtdata/modules/gtdoclib.lua genometools-1.6.1/gtdata/modules/gtdoclib/ genometools-1.6.1/gtdata/modules/gtdoclib/class.lp genometools-1.6.1/gtdata/modules/gtdoclib/class_comments.lp genometools-1.6.1/gtdata/modules/gtdoclib/class_comments_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/class_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/classes.lp genometools-1.6.1/gtdata/modules/gtdoclib/classes_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/docbase.lua genometools-1.6.1/gtdata/modules/gtdoclib/docparser.lua genometools-1.6.1/gtdata/modules/gtdoclib/docvisitorhtml.lua genometools-1.6.1/gtdata/modules/gtdoclib/docvisitorlatex.lua genometools-1.6.1/gtdata/modules/gtdoclib/docvisitortxt.lua genometools-1.6.1/gtdata/modules/gtdoclib/footer.lp genometools-1.6.1/gtdata/modules/gtdoclib/footer_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/funcdef.lp genometools-1.6.1/gtdata/modules/gtdoclib/funcdef_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/gtscript_header.lp genometools-1.6.1/gtdata/modules/gtdoclib/gtscript_header_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/index.lp genometools-1.6.1/gtdata/modules/gtdoclib/libgenometools_header.lp genometools-1.6.1/gtdata/modules/gtdoclib/libgenometools_header_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/method.lp genometools-1.6.1/gtdata/modules/gtdoclib/method_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/module.lp genometools-1.6.1/gtdata/modules/gtdoclib/module_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/modules.lp genometools-1.6.1/gtdata/modules/gtdoclib/modules_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/sole_function.lp genometools-1.6.1/gtdata/modules/gtdoclib/sole_function_latex.lp genometools-1.6.1/gtdata/modules/gtdoclib/variable.lp genometools-1.6.1/gtdata/modules/gtdoclib/variable_latex.lp genometools-1.6.1/gtdata/modules/gtlua.lua genometools-1.6.1/gtdata/modules/gtlua/ genometools-1.6.1/gtdata/modules/gtlua/feature_index.lua genometools-1.6.1/gtdata/modules/gtlua/genome_features.lua genometools-1.6.1/gtdata/modules/gtlua/genome_node.lua genometools-1.6.1/gtdata/modules/gtlua/helper.lua genometools-1.6.1/gtdata/modules/gtlua/range.lua genometools-1.6.1/gtdata/modules/gtmodulehelper.lua genometools-1.6.1/gtdata/modules/optparse.lua genometools-1.6.1/gtdata/modules/stringext.lua genometools-1.6.1/gtdata/modules/warning.lua genometools-1.6.1/gtdata/obo_files/ genometools-1.6.1/gtdata/obo_files/README genometools-1.6.1/gtdata/obo_files/so-xp.obo genometools-1.6.1/gtdata/obo_files/so.obo genometools-1.6.1/gtdata/obo_files/sofa.obo genometools-1.6.1/gtdata/sketch/ genometools-1.6.1/gtdata/sketch/default.style genometools-1.6.1/gtdata/spec/ genometools-1.6.1/gtdata/spec/ansicolors.lua genometools-1.6.1/gtdata/spec/output_drivers/ genometools-1.6.1/gtdata/spec/output_drivers/html genometools-1.6.1/gtdata/spec/output_drivers/json genometools-1.6.1/gtdata/spec/output_drivers/statsonly genometools-1.6.1/gtdata/spec/output_drivers/tabular genometools-1.6.1/gtdata/spec/output_drivers/text genometools-1.6.1/gtdata/spec/speclib.lua genometools-1.6.1/gtdata/trans/ genometools-1.6.1/gtdata/trans/TransAnum genometools-1.6.1/gtdata/trans/TransDNA genometools-1.6.1/gtdata/trans/TransDNAX genometools-1.6.1/gtdata/trans/TransDNAX2 genometools-1.6.1/gtdata/trans/TransDNA_CBNP genometools-1.6.1/gtdata/trans/TransDNAall genometools-1.6.1/gtdata/trans/TransDNAlowermask genometools-1.6.1/gtdata/trans/TransMass genometools-1.6.1/gtdata/trans/TransProt11 genometools-1.6.1/gtdata/trans/TransProt12 genometools-1.6.1/gtdata/trans/TransProt2 genometools-1.6.1/gtdata/trans/TransProt20 genometools-1.6.1/gtdata/trans/TransProt21 genometools-1.6.1/gtdata/trans/TransProt3 genometools-1.6.1/gtdata/trans/TransProt3B genometools-1.6.1/gtdata/trans/TransProt4 genometools-1.6.1/gtdata/trans/TransProt4B genometools-1.6.1/gtdata/trans/TransProt6 genometools-1.6.1/gtdata/trans/TransProt7 genometools-1.6.1/gtdata/trans/TransProt8 genometools-1.6.1/gtdata/trans/TransProtall genometools-1.6.1/gtdata/trans/Transab genometools-1.6.1/gtdata/xrf_abbr/ genometools-1.6.1/gtdata/xrf_abbr/GO.xrf_abbr genometools-1.6.1/gtpython/ genometools-1.6.1/gtpython/README genometools-1.6.1/gtpython/gt/ genometools-1.6.1/gtpython/gt/__init__.py genometools-1.6.1/gtpython/gt/annotationsketch/ genometools-1.6.1/gtpython/gt/annotationsketch/__init__.py genometools-1.6.1/gtpython/gt/annotationsketch/block.py genometools-1.6.1/gtpython/gt/annotationsketch/canvas.py genometools-1.6.1/gtpython/gt/annotationsketch/color.py genometools-1.6.1/gtpython/gt/annotationsketch/custom_track.py genometools-1.6.1/gtpython/gt/annotationsketch/custom_track_example.py genometools-1.6.1/gtpython/gt/annotationsketch/diagram.py genometools-1.6.1/gtpython/gt/annotationsketch/feature_index.py genometools-1.6.1/gtpython/gt/annotationsketch/feature_stream.py genometools-1.6.1/gtpython/gt/annotationsketch/graphics.py genometools-1.6.1/gtpython/gt/annotationsketch/image_info.py genometools-1.6.1/gtpython/gt/annotationsketch/layout.py genometools-1.6.1/gtpython/gt/annotationsketch/rec_map.py genometools-1.6.1/gtpython/gt/annotationsketch/style.py genometools-1.6.1/gtpython/gt/core/ genometools-1.6.1/gtpython/gt/core/__init__.py genometools-1.6.1/gtpython/gt/core/alphabet.py genometools-1.6.1/gtpython/gt/core/array.py genometools-1.6.1/gtpython/gt/core/encseq.py genometools-1.6.1/gtpython/gt/core/error.py genometools-1.6.1/gtpython/gt/core/gtrange.py genometools-1.6.1/gtpython/gt/core/gtstr.py genometools-1.6.1/gtpython/gt/core/readmode.py genometools-1.6.1/gtpython/gt/core/str_array.py genometools-1.6.1/gtpython/gt/core/warning.py genometools-1.6.1/gtpython/gt/dlload.py genometools-1.6.1/gtpython/gt/extended/ genometools-1.6.1/gtpython/gt/extended/__init__.py genometools-1.6.1/gtpython/gt/extended/add_introns_stream.py genometools-1.6.1/gtpython/gt/extended/anno_db.py genometools-1.6.1/gtpython/gt/extended/comment_node.py genometools-1.6.1/gtpython/gt/extended/custom_stream.py genometools-1.6.1/gtpython/gt/extended/custom_stream_example.py genometools-1.6.1/gtpython/gt/extended/custom_visitor.py genometools-1.6.1/gtpython/gt/extended/custom_visitor_example.py genometools-1.6.1/gtpython/gt/extended/dup_feature_stream.py genometools-1.6.1/gtpython/gt/extended/eof_node.py genometools-1.6.1/gtpython/gt/extended/feature_index.py genometools-1.6.1/gtpython/gt/extended/feature_node.py genometools-1.6.1/gtpython/gt/extended/feature_stream.py genometools-1.6.1/gtpython/gt/extended/genome_node.py genometools-1.6.1/gtpython/gt/extended/genome_stream.py genometools-1.6.1/gtpython/gt/extended/gff3_in_stream.py genometools-1.6.1/gtpython/gt/extended/gff3_out_stream.py genometools-1.6.1/gtpython/gt/extended/gff3_visitor.py genometools-1.6.1/gtpython/gt/extended/inter_feature_stream.py genometools-1.6.1/gtpython/gt/extended/merge_feature_stream.py genometools-1.6.1/gtpython/gt/extended/meta_node.py genometools-1.6.1/gtpython/gt/extended/node_visitor.py genometools-1.6.1/gtpython/gt/extended/rdb.py genometools-1.6.1/gtpython/gt/extended/region_node.py genometools-1.6.1/gtpython/gt/extended/sequence_node.py genometools-1.6.1/gtpython/gt/extended/sort_stream.py genometools-1.6.1/gtpython/gt/extended/strand.py genometools-1.6.1/gtpython/gt/props.py genometools-1.6.1/gtpython/gt/version.py genometools-1.6.1/gtpython/setup.cfg genometools-1.6.1/gtpython/setup.py genometools-1.6.1/gtpython/sketch_constructed.py genometools-1.6.1/gtpython/sketch_parsed.py genometools-1.6.1/gtpython/tests/ genometools-1.6.1/gtpython/tests/__init__.py genometools-1.6.1/gtpython/tests/test_alphabet.py genometools-1.6.1/gtpython/tests/test_commentnode.py genometools-1.6.1/gtpython/tests/test_customvisitor.py genometools-1.6.1/gtpython/tests/test_encseq.py genometools-1.6.1/gtpython/tests/test_featurenode.py genometools-1.6.1/gtpython/tests/test_iterators.py genometools-1.6.1/gtpython/tests/test_metanode.py genometools-1.6.1/gtpython/tests/test_range.py genometools-1.6.1/gtpython/tests/test_sequencenode.py genometools-1.6.1/gtpython/tests/test_stream.py genometools-1.6.1/gtpython/tests/test_version.py genometools-1.6.1/gtruby/ genometools-1.6.1/gtruby/README genometools-1.6.1/gtruby/annotationsketch.rb genometools-1.6.1/gtruby/annotationsketch/ genometools-1.6.1/gtruby/annotationsketch/block.rb genometools-1.6.1/gtruby/annotationsketch/canvas.rb genometools-1.6.1/gtruby/annotationsketch/color.rb genometools-1.6.1/gtruby/annotationsketch/custom_track.rb genometools-1.6.1/gtruby/annotationsketch/custom_track_example.rb genometools-1.6.1/gtruby/annotationsketch/diagram.rb genometools-1.6.1/gtruby/annotationsketch/feature_index.rb genometools-1.6.1/gtruby/annotationsketch/feature_stream.rb genometools-1.6.1/gtruby/annotationsketch/graphics.rb genometools-1.6.1/gtruby/annotationsketch/image_info.rb genometools-1.6.1/gtruby/annotationsketch/layout.rb genometools-1.6.1/gtruby/annotationsketch/rec_map.rb genometools-1.6.1/gtruby/annotationsketch/style.rb genometools-1.6.1/gtruby/core.rb genometools-1.6.1/gtruby/core/ genometools-1.6.1/gtruby/core/allocators.rb genometools-1.6.1/gtruby/core/alphabet.rb genometools-1.6.1/gtruby/core/array.rb genometools-1.6.1/gtruby/core/encseq.rb genometools-1.6.1/gtruby/core/error.rb genometools-1.6.1/gtruby/core/range.rb genometools-1.6.1/gtruby/core/readmode.rb genometools-1.6.1/gtruby/core/str.rb genometools-1.6.1/gtruby/core/str_array.rb genometools-1.6.1/gtruby/extended.rb genometools-1.6.1/gtruby/extended/ genometools-1.6.1/gtruby/extended/add_introns_stream.rb genometools-1.6.1/gtruby/extended/anno_db.rb genometools-1.6.1/gtruby/extended/check_boundaries_visitor.rb genometools-1.6.1/gtruby/extended/comment_node.rb genometools-1.6.1/gtruby/extended/custom_stream.rb genometools-1.6.1/gtruby/extended/custom_stream_example.rb genometools-1.6.1/gtruby/extended/custom_visitor.rb genometools-1.6.1/gtruby/extended/custom_visitor_example.rb genometools-1.6.1/gtruby/extended/eof_node.rb genometools-1.6.1/gtruby/extended/feature_index.rb genometools-1.6.1/gtruby/extended/feature_node.rb genometools-1.6.1/gtruby/extended/feature_stream.rb genometools-1.6.1/gtruby/extended/genome_node.rb genometools-1.6.1/gtruby/extended/genome_stream.rb genometools-1.6.1/gtruby/extended/gff3_in_stream.rb genometools-1.6.1/gtruby/extended/gff3_out_stream.rb 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genometools-1.6.1/scripts/Suffixerator-table.rb genometools-1.6.1/scripts/Vagrantfile genometools-1.6.1/scripts/add-copyright.sh genometools-1.6.1/scripts/add_revcmp.rb genometools-1.6.1/scripts/all-vs-all.sh genometools-1.6.1/scripts/alloutputoptions.rb genometools-1.6.1/scripts/appendsuffix.rb genometools-1.6.1/scripts/ascQorder.rb genometools-1.6.1/scripts/blast2gff.rb genometools-1.6.1/scripts/blat2gff3 genometools-1.6.1/scripts/build_dists.sh genometools-1.6.1/scripts/build_windows.sh genometools-1.6.1/scripts/calcmonosize.rb genometools-1.6.1/scripts/callrununique.sh genometools-1.6.1/scripts/calltestcase.sh genometools-1.6.1/scripts/check-fstperquery.rb genometools-1.6.1/scripts/check_api_includes genometools-1.6.1/scripts/check_core_includes genometools-1.6.1/scripts/checkchains.rb genometools-1.6.1/scripts/checklcp.sh genometools-1.6.1/scripts/checkmaxpairs.sh genometools-1.6.1/scripts/checktallymer.sh genometools-1.6.1/scripts/checkunique.sh genometools-1.6.1/scripts/class_gen.rb genometools-1.6.1/scripts/class_implement.rb genometools-1.6.1/scripts/cleanpp.sh genometools-1.6.1/scripts/cmp-seedmatches.rb genometools-1.6.1/scripts/cmp-seex-bench.rb genometools-1.6.1/scripts/cmp-seex-iter.rb genometools-1.6.1/scripts/cmp-seex.rb genometools-1.6.1/scripts/cmp_db_query_exch.rb genometools-1.6.1/scripts/cmpdbfile.sh genometools-1.6.1/scripts/cmplcpintervals.sh genometools-1.6.1/scripts/code_templates.rb genometools-1.6.1/scripts/codegen genometools-1.6.1/scripts/codegen_module.rb genometools-1.6.1/scripts/comparesfx.sh genometools-1.6.1/scripts/condenseq_blastsearch_stats.rb genometools-1.6.1/scripts/condenseq_hmmsearch_stats.rb genometools-1.6.1/scripts/convert2myersformat.rb genometools-1.6.1/scripts/coverage-MEM.rb genometools-1.6.1/scripts/create_amalgamation genometools-1.6.1/scripts/create_html genometools-1.6.1/scripts/create_manpages genometools-1.6.1/scripts/ctags.sh genometools-1.6.1/scripts/cutsequences.rb 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genometools-1.6.1/scripts/sfx-big.sh genometools-1.6.1/scripts/shulength.sh genometools-1.6.1/scripts/sim-read-mapping.sh genometools-1.6.1/scripts/single-read-mapping.sh genometools-1.6.1/scripts/skclean.sh genometools-1.6.1/scripts/sketchtest.sh genometools-1.6.1/scripts/skmake.rb genometools-1.6.1/scripts/skmemtest.sh genometools-1.6.1/scripts/sktest-match.sh genometools-1.6.1/scripts/sktest.sh genometools-1.6.1/scripts/skyline.rb genometools-1.6.1/scripts/sortmaxdepth.sh genometools-1.6.1/scripts/splitmultifasta.rb genometools-1.6.1/scripts/spmcheck.sh genometools-1.6.1/scripts/spmfilter.rb genometools-1.6.1/scripts/spmop.sh genometools-1.6.1/scripts/src_check genometools-1.6.1/scripts/src_check_header.rb genometools-1.6.1/scripts/src_clean genometools-1.6.1/scripts/tar_root.sh genometools-1.6.1/scripts/template2c.pl genometools-1.6.1/scripts/tr2deskeys.rb genometools-1.6.1/scripts/travis_installdeps.sh genometools-1.6.1/scripts/travis_test.rb genometools-1.6.1/scripts/turnwheel.rb 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genometools-1.6.1/testdata/gt_mutate_test_2.out genometools-1.6.1/testdata/gt_mutate_test_both.out genometools-1.6.1/testdata/gt_regioncov_test_1.out genometools-1.6.1/testdata/gt_regioncov_test_2.out genometools-1.6.1/testdata/gt_select_encode.out genometools-1.6.1/testdata/gt_select_test.out genometools-1.6.1/testdata/gt_select_test_contain.1000-8999 genometools-1.6.1/testdata/gt_select_test_contain.1000-9000 genometools-1.6.1/testdata/gt_select_test_contain.1001-9000 genometools-1.6.1/testdata/gt_seqlensort_test.fas genometools-1.6.1/testdata/gt_seqlensort_test_sorted.fas genometools-1.6.1/testdata/gt_seqorder_test.fas genometools-1.6.1/testdata/gt_seqorder_test_revsort.fas genometools-1.6.1/testdata/gt_seqorder_test_sort.fas genometools-1.6.1/testdata/gt_seqorder_test_sorthdr.fas genometools-1.6.1/testdata/gt_seqorder_test_sortlength.fas genometools-1.6.1/testdata/gt_sequniq_rev_bug.fas genometools-1.6.1/testdata/gt_sequniq_rev_bug.out genometools-1.6.1/testdata/gt_sketch_multiline_without_parent.gff3 genometools-1.6.1/testdata/gt_sketch_textwidth.gff3 genometools-1.6.1/testdata/gt_sketch_textwidth_0.recmaps genometools-1.6.1/testdata/gt_sketch_textwidth_1.recmaps genometools-1.6.1/testdata/gt_sketch_textwidth_2.recmaps genometools-1.6.1/testdata/gt_splicesiteinfo_prob_1.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_1.fas genometools-1.6.1/testdata/gt_splicesiteinfo_test_1.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_1.out genometools-1.6.1/testdata/gt_splicesiteinfo_test_2.fas genometools-1.6.1/testdata/gt_splicesiteinfo_test_2.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_2.out genometools-1.6.1/testdata/gt_splicesiteinfo_test_3.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_4.fas genometools-1.6.1/testdata/gt_splicesiteinfo_test_4.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_4.out genometools-1.6.1/testdata/gt_splicesiteinfo_test_5.fas genometools-1.6.1/testdata/gt_splicesiteinfo_test_5.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_5.out genometools-1.6.1/testdata/gt_splicesiteinfo_test_6.gff3 genometools-1.6.1/testdata/gt_splicesiteinfo_test_6.mapping genometools-1.6.1/testdata/gt_stat_cdslengthdistri.out genometools-1.6.1/testdata/gt_stat_exonnumberdistri_encode.out genometools-1.6.1/testdata/gt_stat_exonnumberdistri_standard.out genometools-1.6.1/testdata/gt_stat_source.out genometools-1.6.1/testdata/gt_stat_test_1.out genometools-1.6.1/testdata/gt_stat_test_2.out genometools-1.6.1/testdata/gt_stat_test_3.out genometools-1.6.1/testdata/gt_stat_test_4.out genometools-1.6.1/testdata/gt_stat_test_5.out genometools-1.6.1/testdata/gt_stat_test_6.out genometools-1.6.1/testdata/gt_translate.in genometools-1.6.1/testdata/gt_translate.out genometools-1.6.1/testdata/gt_uniq_test_1.gff3 genometools-1.6.1/testdata/gt_uniq_test_1.out genometools-1.6.1/testdata/gt_uniq_test_2.gff3 genometools-1.6.1/testdata/gt_uniq_test_2.out genometools-1.6.1/testdata/gt_uniq_test_3.gff3 genometools-1.6.1/testdata/gt_uniq_test_3.out genometools-1.6.1/testdata/gt_uniq_test_4.gff3 genometools-1.6.1/testdata/gt_uniq_test_4.out genometools-1.6.1/testdata/gt_uniq_test_5.gff3 genometools-1.6.1/testdata/gt_uniq_test_5.out genometools-1.6.1/testdata/gt_uniq_test_6.gff3 genometools-1.6.1/testdata/gt_uniq_test_6.out genometools-1.6.1/testdata/gt_view.sh genometools-1.6.1/testdata/gt_view_prob_1.gff3 genometools-1.6.1/testdata/gt_view_prob_2.gff3 genometools-1.6.1/testdata/gtpython/ genometools-1.6.1/testdata/gtpython/block_stuff.py genometools-1.6.1/testdata/gtpython/feature_node.py genometools-1.6.1/testdata/gtpython/feature_stuff.py genometools-1.6.1/testdata/gtpython/feature_stuff_db.py genometools-1.6.1/testdata/gtpython/genome_visitor.py genometools-1.6.1/testdata/gtpython/gff3.py genometools-1.6.1/testdata/gtpython/graphics_stuff.py genometools-1.6.1/testdata/gtpython/show_recmaps.py genometools-1.6.1/testdata/gtpython/show_seqids.py genometools-1.6.1/testdata/gtpython/sketch-failures.py genometools-1.6.1/testdata/gtpython/sketch.py genometools-1.6.1/testdata/gtpython/sketch_parsed_with_invalid_ordering.py genometools-1.6.1/testdata/gtpython/sketch_parsed_with_invalid_ordering_2.py genometools-1.6.1/testdata/gtpython/sketch_parsed_with_ordering.py genometools-1.6.1/testdata/gtpython/sketch_simple.py genometools-1.6.1/testdata/gtpython/sketch_stream.py genometools-1.6.1/testdata/gtpython/style.py genometools-1.6.1/testdata/gtpython/style_serialize.py genometools-1.6.1/testdata/gtpython/unicode_strings.py genometools-1.6.1/testdata/gtpython/used_types.py genometools-1.6.1/testdata/gtruby/ genometools-1.6.1/testdata/gtruby/block_stuff.rb genometools-1.6.1/testdata/gtruby/custom_stuff.rb genometools-1.6.1/testdata/gtruby/custom_visitor.rb genometools-1.6.1/testdata/gtruby/encseq.rb genometools-1.6.1/testdata/gtruby/feature_node.rb genometools-1.6.1/testdata/gtruby/feature_stuff.rb genometools-1.6.1/testdata/gtruby/feature_stuff_db.rb genometools-1.6.1/testdata/gtruby/genome_visitor.rb genometools-1.6.1/testdata/gtruby/gff3.rb genometools-1.6.1/testdata/gtruby/graphics_stuff.rb genometools-1.6.1/testdata/gtruby/node_types.rb genometools-1.6.1/testdata/gtruby/range.rb genometools-1.6.1/testdata/gtruby/show_recmaps.rb genometools-1.6.1/testdata/gtruby/show_seqids.rb genometools-1.6.1/testdata/gtruby/sketch-failures.rb genometools-1.6.1/testdata/gtruby/sketch.rb genometools-1.6.1/testdata/gtruby/sketch_parsed_with_invalid_ordering.rb genometools-1.6.1/testdata/gtruby/sketch_parsed_with_invalid_ordering_2.rb genometools-1.6.1/testdata/gtruby/sketch_parsed_with_ordering.rb genometools-1.6.1/testdata/gtruby/sketch_stream.rb genometools-1.6.1/testdata/gtruby/style.rb genometools-1.6.1/testdata/gtruby/style_serialize.rb genometools-1.6.1/testdata/gtruby/type_checker.rb genometools-1.6.1/testdata/gtruby/used_types.rb genometools-1.6.1/testdata/gtscripts/ genometools-1.6.1/testdata/gtscripts/arg.lua genometools-1.6.1/testdata/gtscripts/bittab.lua genometools-1.6.1/testdata/gtscripts/cds_stream.lua genometools-1.6.1/testdata/gtscripts/check_linesorting.lua genometools-1.6.1/testdata/gtscripts/csa_stream.lua genometools-1.6.1/testdata/gtscripts/encseq.lua genometools-1.6.1/testdata/gtscripts/feature_stuff.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_all_strings.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_author_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_description_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_email_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_error_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_name_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_short_description_function.lua genometools-1.6.1/testdata/gtscripts/filter_metadata_test_version_function.lua genometools-1.6.1/testdata/gtscripts/filter_test_LTR.lua genometools-1.6.1/testdata/gtscripts/filter_test_frame_attribute.lua genometools-1.6.1/testdata/gtscripts/filter_test_nodetype.lua genometools-1.6.1/testdata/gtscripts/filter_test_orf_pos_strand.lua genometools-1.6.1/testdata/gtscripts/filter_test_orflength.lua genometools-1.6.1/testdata/gtscripts/filter_test_syntax_fail.lua genometools-1.6.1/testdata/gtscripts/filter_test_wrong_function_name.lua genometools-1.6.1/testdata/gtscripts/filter_test_wrong_nodetype.lua genometools-1.6.1/testdata/gtscripts/genome_node.lua genometools-1.6.1/testdata/gtscripts/genome_stream.lua genometools-1.6.1/testdata/gtscripts/genome_stream_outfile.lua genometools-1.6.1/testdata/gtscripts/genome_stream_stdin.lua genometools-1.6.1/testdata/gtscripts/genome_visitor.lua genometools-1.6.1/testdata/gtscripts/gff3.lua genometools-1.6.1/testdata/gtscripts/ii_fail.lua genometools-1.6.1/testdata/gtscripts/mathsupport.lua genometools-1.6.1/testdata/gtscripts/memleak.lua genometools-1.6.1/testdata/gtscripts/range.lua genometools-1.6.1/testdata/gtscripts/recmap.lua genometools-1.6.1/testdata/gtscripts/require_gtlua.lua genometools-1.6.1/testdata/gtscripts/required_methods.lua genometools-1.6.1/testdata/gtscripts/scorematrix2c.lua genometools-1.6.1/testdata/gtscripts/scorematrix2stdout.lua genometools-1.6.1/testdata/gtscripts/show_seqids.lua genometools-1.6.1/testdata/gtscripts/sketch.lua genometools-1.6.1/testdata/header.gff3 genometools-1.6.1/testdata/header_3_1_21.gff3 genometools-1.6.1/testdata/hop/ genometools-1.6.1/testdata/hop/10reads.fastq genometools-1.6.1/testdata/hop/genome.fas genometools-1.6.1/testdata/hop/hop_10reads.fastq genometools-1.6.1/testdata/hop/hop_aggressive.fastq genometools-1.6.1/testdata/hop/hop_conservative.fastq genometools-1.6.1/testdata/hop/hop_hmin4.fastq genometools-1.6.1/testdata/hop/hop_moderate.fastq genometools-1.6.1/testdata/hop/hop_other10reads.fastq genometools-1.6.1/testdata/hop/hop_read-hmin3.fastq genometools-1.6.1/testdata/hop/map.bam genometools-1.6.1/testdata/hop/map.sam genometools-1.6.1/testdata/hop/map2.bam genometools-1.6.1/testdata/hop/other10reads.fastq genometools-1.6.1/testdata/hop/reads.fastq genometools-1.6.1/testdata/hop/sg_map.bam genometools-1.6.1/testdata/hop/sg_map_q.sam genometools-1.6.1/testdata/hop/sg_reads.fastq genometools-1.6.1/testdata/hop/smallgenome.fas genometools-1.6.1/testdata/identity_score_matrix genometools-1.6.1/testdata/illegal_is_circular_value.gff3 genometools-1.6.1/testdata/illegal_uppercase_attribute.gff3 genometools-1.6.1/testdata/inconsistent_sequence_ids.gff3 genometools-1.6.1/testdata/interfeat_pseudo.gff3 genometools-1.6.1/testdata/interfeat_pseudo.out genometools-1.6.1/testdata/invalidregex.XRF_abbr genometools-1.6.1/testdata/invalidtag.XRF_abbr genometools-1.6.1/testdata/is_circular_example.gff3 genometools-1.6.1/testdata/is_circular_example_with_sequence_region.gff3 genometools-1.6.1/testdata/linesort_test_1.gff3 genometools-1.6.1/testdata/linesort_test_1.out genometools-1.6.1/testdata/linesort_test_2.gff3 genometools-1.6.1/testdata/linesort_test_2.out genometools-1.6.1/testdata/linesort_test_3.gff3 genometools-1.6.1/testdata/linesort_test_3.out genometools-1.6.1/testdata/lua_aaseq.fas genometools-1.6.1/testdata/lua_dnaseq.fas genometools-1.6.1/testdata/marker.fas genometools-1.6.1/testdata/marker.out genometools-1.6.1/testdata/match_part_gap.gff3 genometools-1.6.1/testdata/matchtool_blast.db genometools-1.6.1/testdata/matchtool_blast.match genometools-1.6.1/testdata/matchtool_blast.match.bz2 genometools-1.6.1/testdata/matchtool_blast.match.gz genometools-1.6.1/testdata/matchtool_blast.out genometools-1.6.1/testdata/matchtool_blast_corrupt.match genometools-1.6.1/testdata/matchtool_blast_empty.match genometools-1.6.1/testdata/matchtool_blast_empty.out genometools-1.6.1/testdata/matchtool_blast_neg.match genometools-1.6.1/testdata/matchtool_blast_too_few.match genometools-1.6.1/testdata/matchtool_blast_too_many.match genometools-1.6.1/testdata/matchtool_blastalln.out genometools-1.6.1/testdata/matchtool_blastallp.out genometools-1.6.1/testdata/matchtool_blastn.db genometools-1.6.1/testdata/matchtool_blastn.out genometools-1.6.1/testdata/matchtool_blastn.query genometools-1.6.1/testdata/matchtool_blastp.db genometools-1.6.1/testdata/matchtool_blastp.out genometools-1.6.1/testdata/matchtool_blastp.query genometools-1.6.1/testdata/matchtool_open.match genometools-1.6.1/testdata/matchtool_open.match.bz2 genometools-1.6.1/testdata/matchtool_open.match.gz genometools-1.6.1/testdata/matchtool_open.out genometools-1.6.1/testdata/matchtool_open_corrupt.match genometools-1.6.1/testdata/matchtool_open_empty.match genometools-1.6.1/testdata/matchtool_open_empty.out genometools-1.6.1/testdata/matchtool_open_neg.match genometools-1.6.1/testdata/matchtool_open_too_few.match genometools-1.6.1/testdata/matchtool_open_too_many.match genometools-1.6.1/testdata/matchtool_see-ext.match genometools-1.6.1/testdata/md5_seqid_missing_seqid.gff3 genometools-1.6.1/testdata/md5_seqid_too_short.gff3 genometools-1.6.1/testdata/md5_seqid_wrong_separator.gff3 genometools-1.6.1/testdata/merge_with_seq.gff3 genometools-1.6.1/testdata/mergefeat.gff3 genometools-1.6.1/testdata/mergefeat.out genometools-1.6.1/testdata/mergefeat_no_merge.gff3 genometools-1.6.1/testdata/meta_directives.gff3 genometools-1.6.1/testdata/mini_peptide_repeats.fas genometools-1.6.1/testdata/minimal_fasta.gff3 genometools-1.6.1/testdata/minimal_fasta_without_directive.gff3 genometools-1.6.1/testdata/missing_gff3_header.gff3 genometools-1.6.1/testdata/missingabbr.XRF_abbr genometools-1.6.1/testdata/multi_feature_different_sequence_id.gff3 genometools-1.6.1/testdata/multi_feature_multi.gff3 genometools-1.6.1/testdata/multi_feature_orphan_fail.gff3 genometools-1.6.1/testdata/multi_feature_orphan_succ.gff3 genometools-1.6.1/testdata/multi_feature_simple.gff3 genometools-1.6.1/testdata/multi_feature_simple_reverted.gff3 genometools-1.6.1/testdata/multi_feature_undefined_parent.gff3 genometools-1.6.1/testdata/multi_feature_with_different_parent_1.gff3 genometools-1.6.1/testdata/multi_feature_with_different_parent_1_tidy.gff3 genometools-1.6.1/testdata/multi_feature_with_different_parent_2.gff3 genometools-1.6.1/testdata/multi_feature_with_different_parent_2_tidy.gff3 genometools-1.6.1/testdata/multiple_header_lines.gff3 genometools-1.6.1/testdata/multiple_top_level_parents.gff3 genometools-1.6.1/testdata/nGASP/ genometools-1.6.1/testdata/nGASP/III.fas genometools-1.6.1/testdata/nGASP/protein_10.fas genometools-1.6.1/testdata/nGASP/protein_100.fas genometools-1.6.1/testdata/nGASP/protein_100_with_stop.fas genometools-1.6.1/testdata/nGASP/protein_10th.fas genometools-1.6.1/testdata/nGASP/protein_long.fas genometools-1.6.1/testdata/nGASP/protein_short.fas genometools-1.6.1/testdata/nGASP/resIII.gff3 genometools-1.6.1/testdata/nGASP/resIIIcds.gff3 genometools-1.6.1/testdata/nGASP/test.fas genometools-1.6.1/testdata/not_sorted.gff3 genometools-1.6.1/testdata/nowildcardatend.fna genometools-1.6.1/testdata/nowildcardatend_rev.fna genometools-1.6.1/testdata/obo_files/ genometools-1.6.1/testdata/obo_files/blank_comment_line.obo genometools-1.6.1/testdata/obo_files/blank_line.obo genometools-1.6.1/testdata/obo_files/comment_in_stanza.obo genometools-1.6.1/testdata/obo_files/comment_line.obo genometools-1.6.1/testdata/obo_files/corrupt_header.obo genometools-1.6.1/testdata/obo_files/corrupt_instance_stanza.obo genometools-1.6.1/testdata/obo_files/corrupt_term_stanza.obo genometools-1.6.1/testdata/obo_files/corrupt_typedef_stanza.obo genometools-1.6.1/testdata/obo_files/minimal_header.obo genometools-1.6.1/testdata/obo_files/minimal_stanza.obo genometools-1.6.1/testdata/obo_files/missing_value.obo genometools-1.6.1/testdata/obo_files/tag_only.obo genometools-1.6.1/testdata/obo_files/windows_newline.obo genometools-1.6.1/testdata/order_sketch_out.txt genometools-1.6.1/testdata/orphaned_parent.gff3 genometools-1.6.1/testdata/png_devel_1.gff3 genometools-1.6.1/testdata/png_devel_10.gff3 genometools-1.6.1/testdata/png_devel_11.gff3 genometools-1.6.1/testdata/png_devel_12.gff3 genometools-1.6.1/testdata/png_devel_2.gff3 genometools-1.6.1/testdata/png_devel_3.gff3 genometools-1.6.1/testdata/png_devel_4.gff3 genometools-1.6.1/testdata/png_devel_5.gff3 genometools-1.6.1/testdata/png_devel_6.gff3 genometools-1.6.1/testdata/png_devel_7.gff3 genometools-1.6.1/testdata/png_devel_8.gff3 genometools-1.6.1/testdata/png_devel_9.gff3 genometools-1.6.1/testdata/png_prob_1.gff3 genometools-1.6.1/testdata/png_prob_2.gff3 genometools-1.6.1/testdata/png_prob_3.gff3 genometools-1.6.1/testdata/png_prob_4.gff3 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genometools-1.6.1/www/genometools.org/htdocs/tools/gt_hop.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_id_to_md5.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_inlineseq_add.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_inlineseq_split.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_interfeat.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_loccheck.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_ltrclustering.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_ltrdigest.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_ltrharvest.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_matchtool.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_matstat.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_md5_to_id.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_merge.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_mergefeat.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_mkfeatureindex.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_mmapandread.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_orffinder.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_packedindex.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_prebwt.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_readjoiner.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_readjoiner_assembly.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_readjoiner_overlap.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_readjoiner_prefilter.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_repfind.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_scriptfilter.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seed_extend.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_select.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seq.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqfilter.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqids.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqmutate.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqorder.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqstat.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqtransform.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_seqtranslate.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_sequniq.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_shredder.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_shulengthdist.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_simreads.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_sketch.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_sketch_page.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_snpper.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_speck.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_splicesiteinfo.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_splitfasta.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_stat.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tagerator.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tallymer.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tallymer_mkindex.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tallymer_occratio.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tallymer_search.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_tirvish.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_uniq.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_uniquesub.html genometools-1.6.1/www/genometools.org/htdocs/tools/gt_wtree.html genometools-1.6.1/www/genometools.org/htdocs/trackselectors.html genometools-1.6.1/www/github/ genometools-1.6.1/www/github/assets/ genometools-1.6.1/www/github/assets/overview.png patching file src/ltr/ltrdigest_file_out_stream.c patching file src/mgth/metagenomethreader.h [create obj/gt_config.h] [compile sqlite3.o] src/external/sqlite-3.8.7.1/sqlite3.c: In function ‘sqlite3SelectNew’: src/external/sqlite-3.8.7.1/sqlite3.c:104155:10: warning: function may return address of local variable [-Wreturn-local-addr] 104155 | return pNew; | ^~~~ src/external/sqlite-3.8.7.1/sqlite3.c:104121:10: note: declared here 104121 | Select standin; | ^~~~~~~ [compile alphabet.o] [compile array.o] [compile array2dim.o] [compile array2dim_sparse.o] [compile array3dim.o] [compile basename.o] [compile bioseq.o] [compile bioseq_col.o] [compile bioseq_iterator.o] [compile bitbuffer.o] [compile bitpackstringop.o] [compile bitpackstringop16.o] [compile bitpackstringop32.o] [compile bitpackstringop64.o] [compile bitpackstringop8.o] [compile bittab.o] [compile bool_matrix.o] [compile bsearch.o] [compile byte_popcount.o] [compile byte_select.o] [compile checkbitpackarray.o] [compile checkbitpackstring-int.o] [compile checkbitpackstring.o] [compile checkbitpackstring16.o] [compile checkbitpackstring32.o] [compile checkbitpackstring64.o] [compile checkbitpackstring8.o] [compile class_alloc.o] [compile class_alloc_lock.o] [compile codon_iterator.o] [compile codon_iterator_encseq.o] [compile codon_iterator_simple.o] [compile colorspace.o] [compile combinatorics.o] [compile compact_ulong_store.o] [compile compat.o] [compile complement.o] [compile countingsort.o] [compile cstr.o] [compile cstr_array.o] [compile cstr_table.o] [compile csvline_reader.o] [compile desc_buffer.o] [compile disc_distri.o] [compile dlist.o] [compile dual-pivot-qsort.o] [compile dyn_bittab.o] [compile dynalloc.o] [compile eansi.o] [compile ebzlib.o] [compile encseq.o] [compile encseq_access_type.o] [compile encseq_col.o] [compile encseq_metadata.o] [compile encseq_options.o] [compile encseq_ptr.o] [compile endianess.o] [compile error.o] [compile example.o] [compile example_a.o] [compile example_b.o] [compile ezlib.o] [compile fa.o] [compile fasta.o] [compile fasta_reader.o] [compile fasta_reader_fsm.o] [compile fasta_reader_rec.o] [compile fasta_reader_seqit.o] [compile fastq.o] [compile file.o] [compile fileutils.o] [compile gc_content.o] [compile grep.o] [compile gtdatapath.o] [compile hashmap.o] [compile hashtable.o] [compile init.o] [compile interval_tree.o] [compile io.o] [compile log.o] [compile logger.o] [compile ma.o] [compile mapspec.o] [compile mathsupport.o] [compile md5_encoder.o] [compile md5_fingerprint.o] [compile md5_seqid.o] [compile md5_tab.o] [compile msort.o] [compile multithread.o] [compile option.o] [compile orf.o] [compile output_file.o] [compile parseutils.o] [compile password_entry.o] [compile phase.o] [compile process.o] [compile progressbar.o] [compile qsort-ulong.o] [compile qsort_r.o] [compile quality.o] [compile queue.o] [compile radix_sort.o] [compile range.o] [compile readmode.o] [compile safearith.o] [compile score_function.o] [compile score_matrix.o] [compile seq.o] [compile seq_col.o] [compile seq_info_cache.o] [compile seq_iterator.o] [compile seq_iterator_fastq.o] [compile seq_iterator_sequence_buffer.o] [compile sequence_buffer.o] [compile sequence_buffer_embl.o] [compile sequence_buffer_fasta.o] [compile sequence_buffer_fastq.o] [compile sequence_buffer_gb.o] [compile sequence_buffer_plain.o] [compile showtime.o] [compile sig.o] [compile spacepeak.o] [compile splitter.o] [compile str.o] [compile str_array.o] [compile str_cache.o] [compile strand.o] [compile strcmp.o] [compile string_distri.o] [compile symbol.o] [compile thread.o] [compile timer.o] [compile tokenizer.o] [compile tool.o] [compile tool_iterator.o] [compile toolbox.o] [compile tooldriver.o] [compile trans_table.o] [compile translator.o] [compile unit_testing.o] [compile version.o] [compile versionfunc.o] [compile warning.o] [compile xansi.o] [compile xbsd.o] [compile xbzlib.o] [compile xposix.o] [compile xzlib.o] [compile yarandom.o] [compile add_ids_stream.o] [compile add_ids_visitor.o] [compile add_introns_stream.o] [compile affinealign.o] [compile aligned_segment.o] [compile aligned_segments_pile.o] [compile alignment.o] [compile anno_db_gfflike.o] [compile anno_db_schema.o] [compile array_in_stream.o] [compile array_out_stream.o] [compile assembly_stats_calculator.o] [compile bed_in_stream.o] [compile bed_parser.o] [compile bitinstream.o] [compile bitoutstream.o] [compile blast_process_call.o] [compile buffer_stream.o] [compile cds_check_stream.o] [compile cds_check_visitor.o] [compile cds_stream.o] [compile cds_visitor.o] [compile chain.o] [compile check_boundaries_visitor.o] [compile chseqids_stream.o] [compile clustered_set.o] [compile clustered_set_uf.o] [compile coin_hmm.o] [compile collect_ids_visitor.o] [compile comment_node.o] [compile compressed_bitsequence.o] [compile condenseq.o] [compile condenseq_creator.o] [compile condenseq_search_arguments.o] [compile consensus_sa.o] [compile csa_gene.o] [compile csa_splice_form.o] [compile csa_stream.o] [compile csa_variable_strands.o] [compile csa_visitor.o] [compile cstr_iterator.o] [compile diagonalbandalign.o] [compile diagonalbandalign_affinegapcost.o] [compile dice_hmm.o] [compile dot_out_stream.o] [compile dot_visitor.o] [compile dup_feature_stream.o] [compile dup_feature_visitor.o] [compile editscript.o] [compile elias_gamma.o] [compile encdesc.o] [compile encdesc_header_io.o] [compile eof_node.o] [compile evaluator.o] [compile extract_feature_sequence.o] [compile extract_feature_stream.o] [compile extract_feature_visitor.o] [compile fasta_header_iterator.o] [compile feature_in_stream.o] [compile feature_index.o] [compile feature_index_memory.o] [compile feature_info.o] [compile feature_node.o] [compile feature_node_iterator.o] [compile feature_node_observer.o] [compile feature_out_stream.o] [compile feature_stream.o] [compile feature_visitor.o] [compile gap_str.o] [compile genome_node.o] [compile gff3_escaping.o] [compile gff3_in_stream.o] [compile gff3_in_stream_plain.o] [compile gff3_linesorted_out_stream.o] [compile gff3_numsorted_out_stream.o] [compile gff3_out_stream.o] [compile gff3_output.o] [compile gff3_parser.o] [compile gff3_visitor.o] [compile globalchaining.o] [compile golomb.o] [compile gtdatahelp.o] [compile gtf_in_stream.o] [compile gtf_out_stream.o] [compile gtf_parser.o] [compile gtf_visitor.o] [compile hcr.o] [compile hmm.o] [compile hpol_processor.o] [compile huffcode.o] [compile id_to_md5_stream.o] [compile id_to_md5_visitor.o] [compile inter_feature_stream.o] [compile inter_feature_visitor.o] [compile intset.o] [compile intset_16.o] [compile intset_32.o] [compile intset_8.o] [compile intset_combined.o] [compile io_function_pointers.o] [compile kmer_database.o] [compile linearalign.o] [compile linearalign_affinegapcost.o] [compile linspace_management.o] [compile load_stream.o] [compile luahelper.o] [compile luaserialize.o] [compile mapping.o] [compile match.o] [compile match_blast.o] [compile match_iterator.o] [compile match_iterator_blast.o] [compile match_iterator_last.o] [compile match_iterator_open.o] [compile match_iterator_sw.o] [compile match_last.o] [compile match_open.o] [compile match_sw.o] [compile match_visitor.o] [compile maxcoordvalue.o] [compile md5_to_id_stream.o] [compile md5_to_id_visitor.o] [compile md5set.o] [compile merge_feature_stream.o] [compile merge_feature_visitor.o] [compile merge_stream.o] [compile meta_node.o] [compile multi_sanitizer_visitor.o] [compile multieoplist.o] [compile mutate.o] [compile node_stream.o] [compile node_visitor.o] [compile obo_parse_tree.o] [compile obo_stanza.o] [compile orf_finder_stream.o] [compile orf_finder_visitor.o] [compile orf_iterator.o] [compile orphanage.o] [compile permute_words.o] [compile popcount_tab.o] [compile priority_queue.o] [compile ranked_list.o] [compile rbtree.o] [compile rcr.o] [compile rdb.o] [compile rdb_sqlite.o] [compile rdb_visitor.o] [compile reconstructalignment.o] [compile region_mapping.o] [compile region_node.o] [compile region_node_builder.o] [compile regioncov_visitor.o] [compile regular_seqid.o] [compile reverse.o] [compile rmq.o] [compile safe_popen.o] [compile sam_alignment.o] [compile sam_query_name_iterator.o] [compile samfile_encseq_mapping.o] [compile samfile_iterator.o] [compile sampling.o] [compile scorehandler.o] [compile script_filter.o] [compile script_wrapper_stream.o] [compile script_wrapper_visitor.o] [compile select_stream.o] [compile select_visitor.o] [compile seqid2file.o] [compile seqid2seqnum_mapping.o] [compile seqpos_classifier.o] [compile sequence_node.o] [compile sequence_node_add_stream.o] [compile sequence_node_out_stream.o] [compile sequence_node_out_visitor.o] [compile set_source_visitor.o] [compile shredder.o] [compile snp_annotator_stream.o] [compile snp_annotator_visitor.o] [compile sort_stream.o] [compile spec_results.o] [compile spec_visitor.o] [compile splice_site_info_stream.o] [compile splice_site_info_visitor.o] [compile splicedseq.o] [compile squarealign.o] [compile sspliced_alignment.o] [compile sspliced_alignment_parsing.o] [compile stat_stream.o] [compile stat_visitor.o] [compile stream_evaluator.o] [compile string_matching.o] [compile swalign.o] [compile tag_value_map.o] [compile targetbest_select_stream.o] [compile tidy_region_node_stream.o] [compile tidy_region_node_visitor.o] [compile tir_stream.o] [compile transcript_bittabs.o] [compile transcript_counts.o] [compile transcript_evaluators.o] [compile transcript_exons.o] [compile transcript_used_exons.o] [compile type_checker.o] [compile type_checker_builtin.o] [compile type_checker_obo.o] [compile type_graph.o] [compile type_node.o] [compile typecheck_info.o] [compile uint64hashtable.o] [compile union_find.o] [compile uniq_stream.o] [compile visitor_stream.o] [compile wtree.o] [compile wtree_encseq.o] [compile xrf_abbr_entry.o] [compile xrf_abbr_parse_tree.o] [compile xrf_checker.o] [compile xrfcheck_info.o] [compile alphabet_lua.o] [compile annotationsketch_lua.o] [compile bittab_lua.o] [compile canvas_lua.o] [compile cds_stream_lua.o] [compile csa_stream_lua.o] [compile diagram_lua.o] [compile encseq_lua.o] [compile feature_index_lua.o] [compile feature_node_iterator_lua.o] [compile feature_stream_lua.o] [compile feature_visitor_lua.o] [compile genome_node_lua.o] [compile genome_stream_lua.o] [compile genome_visitor_lua.o] [compile gt_lua.o] [compile gtcore_lua.o] [compile gtext_lua.o] [compile image_info_lua.o] [compile layout_lua.o] [compile mathsupport_lua.o] [compile range_lua.o] [compile region_mapping_lua.o] [compile score_matrix_lua.o] [compile stream_evaluator_lua.o] [compile translate_lua.o] [compile apmeoveridx.o] [compile asqg_writer.o] [compile bare-encseq.o] [compile bcktab.o] [compile cgr_spacedseed.o] [compile chain2dim.o] [compile chainofin.o] [compile cutendpfx.o] [compile dbs_spaced_seeds.o] [compile diagband-struct.o] [compile diagbandseed.o] [compile dist-short.o] [compile echoseq.o] [compile eis-blockcomp-param.o] [compile eis-blockcomp.o] [compile eis-bwtseq-construct.o] [compile eis-bwtseq-context-param.o] [compile eis-bwtseq-context.o] [compile eis-bwtseq-extinfo.o] [compile eis-bwtseq-param.o] [compile eis-bwtseq-sass.o] [compile eis-bwtseq.o] [compile eis-encidxseq-construct.o] [compile eis-encidxseq-param.o] [compile eis-encidxseq.o] [compile eis-mrangealphabet.o] [compile eis-sa-common.o] [compile eis-seqblocktranslate.o] [compile eis-seqranges.o] [compile eis-sequencemultiread.o] [compile eis-specialsrank.o] [compile eis-suffixarray-interface.o] [compile eis-suffixerator-interface.o] [compile eis-voiditf.o] [compile encseq2offset.o] [compile enum-patt.o] [compile esa-bottomup.o] [compile esa-dfs.o] [compile esa-lcpintervals.o] [compile esa-map.o] [compile esa-maxpairs.o] [compile esa-merge.o] [compile esa-minunique.o] [compile esa-mmsearch.o] [compile esa-scanprj.o] [compile esa-seqread.o] [compile esa-shulen.o] [compile esa-splititv-simple.o] [compile esa-splititv.o] [compile esa-spmitvs.o] [compile esa-spmsk.o] [compile esa_lcpintervals_visitor.o] [compile esa_spmitvs_visitor.o] [compile esa_visitor.o] [compile firstcodes-accum.o] [compile firstcodes-cache.o] [compile firstcodes-insert.o] [compile firstcodes-psbuf.o] [compile firstcodes-scan.o] [compile firstcodes-spacelog.o] [compile firstcodes-tab.o] [compile firstcodes.o] [compile fmi-fwduni.o] [compile fmi-keyval.o] [compile fmi-locate.o] [compile fmi-map.o] [compile fmi-mapspec.o] [compile fmi-mkindex.o] [compile fmi-save.o] [compile fmi-sufbwtstream.o] [compile ft-eoplist.o] [compile ft-front-generation.o] [compile ft-front-prune.o] [compile ft-polish.o] [compile ft-trimstat.o] [compile gfa_writer.o] [compile giextract.o] [compile greedyedist.o] [compile greedyfwdmat.o] [compile hashfirstcodes.o] [compile hlk-version.o] [compile hplstore.o] [compile idx-limdfs.o] [compile idxlocali.o] [compile idxlocalidp.o] [compile idxlocalisw.o] [compile index_options.o] [compile initbasepower.o] [compile initeqsvec.o] [compile iter-window.o] [compile karlin_altschul_stat.o] [compile kmer2string.o] [compile lua_tools.o] [compile marksubstring.o] [compile merger-trie.o] [compile mssufpat.o] [compile myersapm.o] [compile nullcols.o] [compile optionargmode.o] [compile pck-count-nodes.o] [compile pckbucket.o] [compile pckdfs.o] [compile prsqualint.o] [compile pssm.o] [compile querymatch-align.o] [compile querymatch-display.o] [compile querymatch.o] [compile radixsort_str.o] [compile randomcodes-correct.o] [compile randomcodes-find-seldom.o] [compile randomcodes-hpcorrect.o] [compile randomcodes-insert.o] [compile randomcodes-sfx-partssuf.o] [compile randomcodes-tab.o] [compile randomcodes.o] [compile rdj-cntlist.o] [compile rdj-contfind-bottomup.o] [compile rdj-contfinder.o] [compile rdj-contigpaths.o] [compile rdj-contigs-graph.o] [compile rdj-contigs-writer.o] [compile rdj-errfind.o] [compile rdj-ovlfind-bf.o] [compile rdj-ovlfind-dp.o] [compile rdj-ovlfind-gusfield.o] [compile rdj-ovlfind-kmp.o] [compile rdj-pairwise.o] [compile rdj-spmfind.o] [compile rdj-spmlist.o] [compile rdj-spmproc.o] [compile rdj-strgraph.o] [compile rdj-twobitenc-editor.o] [compile rdj-version.o] [compile reads2twobit.o] [compile reads_libraries_table.o] [compile rectangle-store.o] [compile revcompl.o] [compile seed-extend-iter.o] [compile seed-extend.o] [compile seed_extend_parts.o] [compile seqabstract.o] [compile seqnumrelpos.o] [compile sfx-apfxlen.o] [compile sfx-bentsedg.o] [compile sfx-bltrie.o] [compile sfx-copysort.o] [compile sfx-diffcov.o] [compile sfx-enumcodes.o] [compile sfx-lcpvalues.o] [compile sfx-linlcp.o] [compile sfx-lwcheck.o] [compile sfx-mappedstr.o] [compile sfx-maprange.o] [compile sfx-opt.o] [compile sfx-outprj.o] [compile sfx-partssuf.o] [compile sfx-radixsort.o] [compile sfx-run.o] [compile sfx-sain.o] [compile sfx-shortreadsort.o] [compile sfx-suffixer.o] [compile sfx-suffixgetset.o] [compile sfx-suftaborder.o] [compile shu-dfs.o] [compile shu-divergence.o] [compile shu-encseq-gc.o] [compile shu-genomediff.o] [compile shu_unitfile.o] [compile spaced-seeds.o] [compile specialrank.o] [compile spmsuftab.o] [compile squarededist.o] [compile substriter.o] [compile tagerator.o] [compile test-mappedstr.o] [compile test-maxpairs.o] [compile test-mergeesa.o] [compile test-mtrieins.o] [compile test-pairwise.o] [compile turnwheels.o] [compile twobits2kmers.o] [compile tyr-map.o] [compile tyr-mersplit.o] [compile tyr-mkindex.o] [compile tyr-occratio.o] [compile tyr-search.o] [compile xdrop.o] [compile gt_ltrclustering.o] [compile gt_ltrdigest.o] [compile gt_ltrharvest.o] [compile ltr_classify_stream.o] [compile ltr_cluster_prepare_seq_visitor.o] [compile ltr_cluster_stream.o] [compile ltr_four_char_motif.o] [compile ltr_input_check_visitor.o] [compile ltr_orf_annotator_stream.o] [compile ltr_refseq_match_stream.o] [compile ltrdigest_file_out_stream.o] [compile ltrdigest_pbs_visitor.o] [compile ltrdigest_pdom_visitor.o] [compile ltrdigest_ppt_visitor.o] [compile ltrdigest_strand_assign_visitor.o] [compile ltrharvest_fasta_out_stream.o] [compile ltrharvest_fasta_out_visitor.o] [compile ltrharvest_stream.o] [compile ltrharvest_tabout_stream.o] [compile ltrharvest_tabout_visitor.o] [compile pdom_model_set.o] [compile metagenomethreader.o] [compile mg_codon.o] [compile mg_combinedscore.o] [compile mg_compute_gene_prediction.o] [compile mg_computepath.o] [compile mg_outputwriter.o] [compile mg_reverse.o] [compile mg_xmlparser.o] [compile block.o] [compile canvas.o] [compile canvas_cairo.o] [compile canvas_cairo_context.o] [compile canvas_cairo_file.o] [compile color.o] [compile coords.o] [compile custom_track.o] [compile custom_track_example.o] [compile custom_track_gc_content.o] [compile custom_track_script_wrapper.o] [compile diagram.o] [compile drawing_range.o] [compile element.o] [compile graphics.o] [compile graphics_cairo.o] [compile gt_sketch.o] [compile gt_sketch_page.o] [compile image_info.o] [compile layout.o] [compile line.o] [compile line_breaker.o] [compile line_breaker_bases.o] [compile line_breaker_captions.o] [compile luastyle.o] [compile rec_map.o] [compile style.o] [compile text_width_calculator.o] [compile text_width_calculator_cairo.o] [compile track.o] [compile lualib.o] [compile md5.o] [compile md5lib.o] [compile des56.o] [compile ldes56.o] [compile compat-5.2.o] [compile lfs.o] [compile lpeg.o] [compile bgzf.o] [compile kstring.o] [compile bam_aux.o] [compile bam.o] [compile bam_import.o] [compile sam.o] [compile bam_index.o] [compile bam_pileup.o] [compile bam_lpileup.o] [compile bam_md.o] [compile razf.o] [compile faidx.o] [compile bedidx.o] [compile knetfile.o] [compile bam_sort.o] [compile sam_header.o] [compile bam_reheader.o] [compile kprobaln.o] [compile bam_cat.o] [compile xmlparse.o] [compile xmlrole.o] [compile xmltok.o] [compile regcomp.o] [compile regerror.o] [compile regexec.o] [compile tre-ast.o] [compile tre-compile.o] [compile tre-filter.o] [compile tre-match-backtrack.o] [compile tre-match-parallel.o] [compile tre-mem.o] [compile tre-parse.o] [compile tre-stack.o] [compile xmalloc.o] [compile blocksort.o] [compile huffman.o] [compile crctable.o] [compile randtable.o] [compile compress.o] [compile decompress.o] [compile bzlib.o] [compile adler32.o] [compile compress.o] [compile crc32.o] [compile gzclose.o] [compile gzlib.o] [compile gzread.o] [compile gzwrite.o] [compile uncompr.o] [compile deflate.o] [compile trees.o] [compile zutil.o] [compile inflate.o] [compile infback.o] [compile inftrees.o] [compile inffast.o] [link libsqlite.a] ar: creating lib/libsqlite.a [link libgenometools.a] ar: creating lib/libgenometools.a [link libbz2.a] ar: creating lib/libbz2.a [link libz.a] ar: creating lib/libz.a [link libexpat.a] ar: creating lib/libexpat.a [gathering public API symbols to obj/public_symbols.lst] [link libgenometools.so] [compile gt.o] [compile gtr.o] [compile gtt.o] [compile interactive.o] [compile gt_bed_to_gff3.o] [compile gt_cds.o] [compile gt_chain2dim.o] [compile gt_chseqids.o] [compile gt_clean.o] [compile gt_compreads.o] [compile gt_compreads_compress.o] [compile gt_compreads_decompress.o] [compile gt_compreads_refcompress.o] [compile gt_compreads_refdecompress.o] [compile gt_compressedbits.o] [compile gt_condenseq.o] [compile gt_condenseq_blast.o] [compile gt_condenseq_compress.o] [compile gt_condenseq_extract.o] [compile gt_condenseq_hmmsearch.o] [compile gt_condenseq_info.o] [compile gt_condenseq_search.o] [compile gt_congruence.o] [compile gt_consensus_sa.o] [compile gt_convertseq.o] [compile gt_csa.o] [compile gt_dev.o] [compile gt_dot.o] [compile gt_dupfeat.o] [compile gt_encseq.o] [compile gt_encseq2spm.o] [compile gt_encseq_bench.o] [compile gt_encseq_bitextract.o] [compile gt_encseq_check.o] [compile gt_encseq_decode.o] [compile gt_encseq_encode.o] [compile gt_encseq_info.o] [compile gt_encseq_md5.o] [compile gt_encseq_sample.o] [compile gt_eval.o] [compile gt_extractfeat.o] [compile gt_extractseq.o] [compile gt_extracttarget.o] [compile gt_fastq_sample.o] [compile gt_featureindex.o] [compile gt_fingerprint.o] [compile gt_gdiffcalc.o] [compile gt_genomediff.o] [compile gt_gff3.o] [compile gt_gff3_to_gtf.o] [compile gt_gff3validator.o] [compile gt_gtf_to_gff3.o] [compile gt_guessprot.o] [compile gt_hop.o] [compile gt_id_to_md5.o] [compile gt_idxlocali.o] [compile gt_inlineseq_add.o] [compile gt_inlineseq_split.o] [compile gt_interfeat.o] [compile gt_kmer_database.o] [compile gt_linspace_align.o] [compile gt_loccheck.o] [compile gt_magicmatch.o] [compile gt_matchtool.o] [compile gt_matstat.o] [compile gt_md5_to_id.o] [compile gt_merge.o] [compile gt_mergeesa.o] [compile gt_mergefeat.o] [compile gt_mgth.o] [compile gt_mkfeatureindex.o] [compile gt_mkfmindex.o] [compile gt_mmapandread.o] [compile gt_orffinder.o] [compile gt_packedindex.o] [compile gt_packedindex_chk_integrity.o] [compile gt_packedindex_chk_search.o] [compile gt_packedindex_mkctxmap.o] [compile gt_packedindex_trsuftab.o] [compile gt_paircmp.o] [compile gt_parsexrf.o] [compile gt_patternmatch.o] [compile gt_prebwt.o] [compile gt_readjoiner.o] [compile gt_readjoiner_asqg.o] [compile gt_readjoiner_assembly.o] [compile gt_readjoiner_cgraph.o] [compile gt_readjoiner_cnttest.o] [compile gt_readjoiner_correct.o] [compile gt_readjoiner_gfa.o] [compile gt_readjoiner_graph.o] [compile gt_readjoiner_overlap.o] [compile gt_readjoiner_prefilter.o] [compile gt_readjoiner_spmtest.o] [compile gt_readreads.o] [compile gt_regioncov.o] [compile gt_repfind.o] [compile gt_sain.o] [compile gt_sam_interface.o] [compile gt_script_filter.o] [compile gt_seed_extend.o] [compile gt_select.o] [compile gt_seq.o] [compile gt_seqcorrect.o] [compile gt_seqfilter.o] [compile gt_seqids.o] [compile gt_seqlensort.o] [compile gt_seqmutate.o] [compile gt_seqorder.o] [compile gt_seqstat.o] [compile gt_seqtransform.o] [compile gt_seqtranslate.o] [compile gt_sequniq.o] [compile gt_sfxmap.o] [compile gt_show_seedext.o] [compile gt_shredder.o] [compile gt_shulen.o] [compile gt_simreads.o] [compile gt_skproto.o] [compile gt_snpper.o] [compile gt_sortbench.o] [compile gt_speck.o] [compile gt_splicesiteinfo.o] [compile gt_splitfasta.o] [compile gt_stat.o] [compile gt_suffixerator.o] [compile gt_tagerator.o] [compile gt_tallymer.o] [compile gt_template.o] [compile gt_tir.o] [compile gt_trieins.o] [compile gt_uniq.o] [compile gt_wtree.o] [compile gt_wtree_bench.o] [link gt] [compile custom_stream.o] [link custom_stream] [compile gff3sort.o] [link gff3sort] [compile gff3validator.o] [link gff3validator] [compile noop.o] [link noop] [compile sketch_constructed.o] [link sketch_constructed] [compile sketch_parsed_with_ctrack.o] [link sketch_parsed_with_ctrack] [compile sketch_parsed_with_ordering.o] [link sketch_parsed_with_ordering] [compile sketch_parsed.o] [link sketch_parsed] [compile all.o] [link lua] test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin cp bin/gt /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin strip /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin/gt mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/share/genometools cp -a gtdata /usr/src/slapt-src/academic/genometools/package-genometools/usr/share/genometools/ test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/core \ || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/core cp src/core/*_api.h /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/core test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/extended \ || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/extended cp src/extended/*_api.h /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/extended test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/annotationsketch \ || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/annotationsketch test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/ltr \ || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/ltr cp src/ltr/*_api.h /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools/ltr cp obj/gt_config.h /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools cp src/genometools.h /usr/src/slapt-src/academic/genometools/package-genometools/usr/include/genometools test -d /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib || mkdir -p /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib cp lib/libgenometools.a /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib cp lib/libgenometools.so /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!!' \ -e 's!@CPPFLAGS@!-I\\"/usr/src/slapt-src/academic/genometools/package-genometools/usr/include\\" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DSQLITE_THREADSAFE=0 -DHAVE_SQLITE!' \ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!!' \ -e 's!@LDFLAGS@!-L/usr/src/slapt-src/academic/genometools/package-genometools/usr/lib -L/usr/local/lib -L/usr/X11R6/lib!' \ -e 's!@LIBS@! -lm -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -ldl!' -e "s!@VERSION@!`cat VERSION`!" \ -e 's!@BUILDSTAMP@!"2022-06-04 01:11:03"!' \ -e 's!@SYSTEM@!Linux!' /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin/genometools-config chmod 755 /usr/src/slapt-src/academic/genometools/package-genometools/usr/bin/genometools-config running install running build running build_py creating build creating build/lib creating build/lib/gt copying gt/__init__.py -> build/lib/gt copying gt/dlload.py -> build/lib/gt copying gt/props.py -> build/lib/gt copying gt/version.py -> build/lib/gt creating build/lib/gt/core copying gt/core/__init__.py -> build/lib/gt/core copying gt/core/alphabet.py -> build/lib/gt/core copying gt/core/array.py -> build/lib/gt/core copying gt/core/encseq.py -> build/lib/gt/core copying gt/core/error.py -> build/lib/gt/core copying gt/core/gtrange.py -> build/lib/gt/core copying gt/core/gtstr.py -> build/lib/gt/core copying gt/core/readmode.py -> build/lib/gt/core copying gt/core/str_array.py -> build/lib/gt/core copying gt/core/warning.py -> build/lib/gt/core creating build/lib/gt/annotationsketch copying gt/annotationsketch/__init__.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/block.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/canvas.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/color.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/custom_track.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/custom_track_example.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/diagram.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/feature_index.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/feature_stream.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/graphics.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/image_info.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/layout.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/rec_map.py -> build/lib/gt/annotationsketch copying gt/annotationsketch/style.py -> build/lib/gt/annotationsketch creating build/lib/gt/extended copying gt/extended/__init__.py -> build/lib/gt/extended copying gt/extended/add_introns_stream.py -> build/lib/gt/extended copying gt/extended/anno_db.py -> build/lib/gt/extended copying gt/extended/comment_node.py -> build/lib/gt/extended copying gt/extended/custom_stream.py -> build/lib/gt/extended copying gt/extended/custom_stream_example.py -> build/lib/gt/extended copying gt/extended/custom_visitor.py -> build/lib/gt/extended copying gt/extended/custom_visitor_example.py -> build/lib/gt/extended copying gt/extended/dup_feature_stream.py -> build/lib/gt/extended copying gt/extended/eof_node.py -> build/lib/gt/extended copying gt/extended/feature_index.py -> build/lib/gt/extended copying gt/extended/feature_node.py -> build/lib/gt/extended copying gt/extended/feature_stream.py -> build/lib/gt/extended copying gt/extended/genome_node.py -> build/lib/gt/extended copying gt/extended/genome_stream.py -> build/lib/gt/extended copying gt/extended/gff3_in_stream.py -> build/lib/gt/extended copying gt/extended/gff3_out_stream.py -> build/lib/gt/extended copying gt/extended/gff3_visitor.py -> build/lib/gt/extended copying gt/extended/inter_feature_stream.py -> build/lib/gt/extended copying gt/extended/merge_feature_stream.py -> build/lib/gt/extended copying gt/extended/meta_node.py -> build/lib/gt/extended copying gt/extended/node_visitor.py -> build/lib/gt/extended copying gt/extended/rdb.py -> build/lib/gt/extended copying gt/extended/region_node.py -> build/lib/gt/extended copying gt/extended/sequence_node.py -> build/lib/gt/extended copying gt/extended/sort_stream.py -> build/lib/gt/extended copying gt/extended/strand.py -> build/lib/gt/extended running install_lib creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7 creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt copying build/lib/gt/__init__.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt copying build/lib/gt/dlload.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt copying build/lib/gt/props.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt copying build/lib/gt/version.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/__init__.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/alphabet.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/array.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/encseq.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/error.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/gtrange.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/gtstr.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/readmode.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/str_array.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core copying build/lib/gt/core/warning.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/__init__.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/block.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/canvas.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/color.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/custom_track.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/custom_track_example.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/diagram.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/feature_index.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/feature_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/graphics.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/image_info.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/layout.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/rec_map.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch copying build/lib/gt/annotationsketch/style.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch creating /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/__init__.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/add_introns_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/anno_db.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/comment_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/custom_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/custom_stream_example.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/custom_visitor.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/custom_visitor_example.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/dup_feature_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/eof_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/feature_index.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/feature_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/feature_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/genome_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/genome_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/gff3_in_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/gff3_out_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/gff3_visitor.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/inter_feature_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/merge_feature_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/meta_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/node_visitor.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/rdb.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/region_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/sequence_node.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/sort_stream.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended copying build/lib/gt/extended/strand.py -> /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/dlload.py to dlload.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/props.py to props.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/version.py to version.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/alphabet.py to alphabet.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/array.py to array.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/encseq.py to encseq.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/error.py to error.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/gtrange.py to gtrange.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/gtstr.py to gtstr.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/readmode.py to readmode.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/str_array.py to str_array.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/core/warning.py to warning.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch/block.py to block.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/annotationsketch/canvas.py to 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/usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended/sort_stream.py to sort_stream.pyc byte-compiling /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/gt/extended/strand.py to strand.pyc running install_egg_info Writing /usr/src/slapt-src/academic/genometools/package-genometools/usr/lib/python2.7/site-packages/GenomeTools-1.6.1-py2.7.egg-info Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/genometools/genometools-1.6.1-i586-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/genometools-config usr/bin/gt usr/doc/ usr/doc/genometools-1.6.1/ usr/doc/genometools-1.6.1/CHANGELOG usr/doc/genometools-1.6.1/CONTRIBUTORS usr/doc/genometools-1.6.1/INSTALL usr/doc/genometools-1.6.1/LICENSE usr/doc/genometools-1.6.1/README usr/doc/genometools-1.6.1/References usr/doc/genometools-1.6.1/VERSION usr/doc/genometools-1.6.1/genometools.SlackBuild usr/doc/genometools-1.6.1/genometools.org/ usr/doc/genometools-1.6.1/genometools.org/htdocs/ usr/doc/genometools-1.6.1/genometools.org/htdocs/.gitignore usr/doc/genometools-1.6.1/genometools.org/htdocs/annotationsketch/ usr/doc/genometools-1.6.1/genometools.org/htdocs/annotationsketch.html 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usr/share/genometools/gtdata/doc/csa.lua usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3 usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3 usr/share/genometools/gtdata/doc/eval.lua usr/share/genometools/gtdata/doc/extractfeat.lua usr/share/genometools/gtdata/doc/extractseq.lua usr/share/genometools/gtdata/doc/fingerprint.lua usr/share/genometools/gtdata/doc/genomediff.lua usr/share/genometools/gtdata/doc/gff3.lua usr/share/genometools/gtdata/doc/gt.lua usr/share/genometools/gtdata/doc/hop.lua usr/share/genometools/gtdata/doc/id_to_md5.lua usr/share/genometools/gtdata/doc/luafilter.lua usr/share/genometools/gtdata/doc/luafilter_function.lua usr/share/genometools/gtdata/doc/magicmatch.lua usr/share/genometools/gtdata/doc/mutate.lua usr/share/genometools/gtdata/doc/readjoiner.lua usr/share/genometools/gtdata/doc/regionmapping.lua usr/share/genometools/gtdata/doc/regionmapping_function.lua 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usr/share/genometools/gtdata/modules/gtdoclib/classes_latex.lp usr/share/genometools/gtdata/modules/gtdoclib/docbase.lua usr/share/genometools/gtdata/modules/gtdoclib/docparser.lua usr/share/genometools/gtdata/modules/gtdoclib/docvisitorhtml.lua usr/share/genometools/gtdata/modules/gtdoclib/docvisitorlatex.lua usr/share/genometools/gtdata/modules/gtdoclib/docvisitortxt.lua usr/share/genometools/gtdata/modules/gtdoclib/footer.lp usr/share/genometools/gtdata/modules/gtdoclib/footer_latex.lp usr/share/genometools/gtdata/modules/gtdoclib/funcdef.lp usr/share/genometools/gtdata/modules/gtdoclib/funcdef_latex.lp usr/share/genometools/gtdata/modules/gtdoclib/gtscript_header.lp usr/share/genometools/gtdata/modules/gtdoclib/gtscript_header_latex.lp usr/share/genometools/gtdata/modules/gtdoclib/index.lp usr/share/genometools/gtdata/modules/gtdoclib/libgenometools_header.lp usr/share/genometools/gtdata/modules/gtdoclib/libgenometools_header_latex.lp 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usr/share/genometools/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules/optparse.lua usr/share/genometools/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules/warning.lua usr/share/genometools/gtdata/obo_files/ usr/share/genometools/gtdata/obo_files/README usr/share/genometools/gtdata/obo_files/so-xp.obo usr/share/genometools/gtdata/obo_files/so.obo usr/share/genometools/gtdata/obo_files/sofa.obo usr/share/genometools/gtdata/sketch/ usr/share/genometools/gtdata/sketch/default.style usr/share/genometools/gtdata/spec/ usr/share/genometools/gtdata/spec/ansicolors.lua usr/share/genometools/gtdata/spec/output_drivers/ usr/share/genometools/gtdata/spec/output_drivers/html usr/share/genometools/gtdata/spec/output_drivers/json usr/share/genometools/gtdata/spec/output_drivers/statsonly usr/share/genometools/gtdata/spec/output_drivers/tabular usr/share/genometools/gtdata/spec/output_drivers/text usr/share/genometools/gtdata/spec/speclib.lua usr/share/genometools/gtdata/trans/ usr/share/genometools/gtdata/trans/TransAnum usr/share/genometools/gtdata/trans/TransDNA usr/share/genometools/gtdata/trans/TransDNAX usr/share/genometools/gtdata/trans/TransDNAX2 usr/share/genometools/gtdata/trans/TransDNA_CBNP usr/share/genometools/gtdata/trans/TransDNAall usr/share/genometools/gtdata/trans/TransDNAlowermask usr/share/genometools/gtdata/trans/TransMass usr/share/genometools/gtdata/trans/TransProt11 usr/share/genometools/gtdata/trans/TransProt12 usr/share/genometools/gtdata/trans/TransProt2 usr/share/genometools/gtdata/trans/TransProt20 usr/share/genometools/gtdata/trans/TransProt21 usr/share/genometools/gtdata/trans/TransProt3 usr/share/genometools/gtdata/trans/TransProt3B usr/share/genometools/gtdata/trans/TransProt4 usr/share/genometools/gtdata/trans/TransProt4B usr/share/genometools/gtdata/trans/TransProt6 usr/share/genometools/gtdata/trans/TransProt7 usr/share/genometools/gtdata/trans/TransProt8 usr/share/genometools/gtdata/trans/TransProtall usr/share/genometools/gtdata/trans/Transab usr/share/genometools/gtdata/xrf_abbr/ usr/share/genometools/gtdata/xrf_abbr/GO.xrf_abbr Slackware package /usr/src/slapt-src/academic/genometools/genometools-1.6.1-i586-1salix15.0.txz created. Installing package genometools-1.6.1-i586-1salix15.0... | genometools (collection of bio-informatics tools) | | The GenomeTools genome analysis system is a free collection of | bioinformatics tools (in the realm of genome informatics) | combined into a single binary named gt. It is based on a C | library named "libgenometools" which consists of several modules. | | Home: http://genometools.org/ | | | | |