The following packages will be installed: meme-suite Fetching README... 0%100%100%100%100%100%Done Fetching README.DATABASES... 0%100%100%100%100%100%Done Fetching README.TESTS... 0%100%100%100%100%100%Done Fetching References... 0%100%100%100%100%100%Done Fetching meme-suite.SlackBuild... 0%100%100%100%100%100%Done Fetching meme-suite.info... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done meme-5.3.3/ meme-5.3.3/aclocal.m4 meme-5.3.3/ARCHIVE_DATE meme-5.3.3/ARCHIVE_REVISION meme-5.3.3/AUTHORS meme-5.3.3/build.xml.in meme-5.3.3/ChangeLog meme-5.3.3/config/ meme-5.3.3/config.h.in meme-5.3.3/configure meme-5.3.3/configure.ac meme-5.3.3/COPYING meme-5.3.3/doc/ meme-5.3.3/etc/ meme-5.3.3/INSTALL meme-5.3.3/m4/ meme-5.3.3/Makefile.am meme-5.3.3/Makefile.in meme-5.3.3/MemeSuite.properties.in meme-5.3.3/NEWS meme-5.3.3/README meme-5.3.3/scripts/ meme-5.3.3/src/ meme-5.3.3/tests/ meme-5.3.3/website/ meme-5.3.3/website.mk meme-5.3.3/website/canvas-test.html meme-5.3.3/website/css/ meme-5.3.3/website/images/ meme-5.3.3/website/index.html meme-5.3.3/website/js/ meme-5.3.3/website/lib/ meme-5.3.3/website/Makefile.am meme-5.3.3/website/Makefile.in meme-5.3.3/website/src/ meme-5.3.3/website/templates/ meme-5.3.3/website/web.xml meme-5.3.3/website/templates/ame.tmpl meme-5.3.3/website/templates/ame_verify.tmpl meme-5.3.3/website/templates/centrimo.tmpl.in meme-5.3.3/website/templates/centrimo_verify.tmpl meme-5.3.3/website/templates/component_adv_btn.tmpl meme-5.3.3/website/templates/component_bfile.tmpl meme-5.3.3/website/templates/component_footer.tmpl.in meme-5.3.3/website/templates/component_glam2motifs.tmpl meme-5.3.3/website/templates/component_gomo.tmpl meme-5.3.3/website/templates/component_header.tmpl meme-5.3.3/website/templates/component_job_details.tmpl meme-5.3.3/website/templates/component_loci.tmpl meme-5.3.3/website/templates/component_motifs.tmpl meme-5.3.3/website/templates/component_sequences.tmpl meme-5.3.3/website/templates/component_submit_reset.tmpl meme-5.3.3/website/templates/component_tgene.tmpl meme-5.3.3/website/templates/dreme.tmpl.in meme-5.3.3/website/templates/dreme_verify.tmpl meme-5.3.3/website/templates/email.tmpl meme-5.3.3/website/templates/fimo.tmpl meme-5.3.3/website/templates/fimo_verify.tmpl meme-5.3.3/website/templates/glam2.tmpl.in meme-5.3.3/website/templates/glam2_verify.tmpl meme-5.3.3/website/templates/glam2scan.tmpl meme-5.3.3/website/templates/glam2scan_verify.tmpl meme-5.3.3/website/templates/gomo.tmpl meme-5.3.3/website/templates/gomo_verify.tmpl meme-5.3.3/website/templates/Makefile.am meme-5.3.3/website/templates/Makefile.in meme-5.3.3/website/templates/mast.tmpl meme-5.3.3/website/templates/mast_verify.tmpl meme-5.3.3/website/templates/mcast.tmpl meme-5.3.3/website/templates/mcast_verify.tmpl meme-5.3.3/website/templates/meme-chip.tmpl.in meme-5.3.3/website/templates/meme-chip_verify.tmpl meme-5.3.3/website/templates/meme.tmpl.in meme-5.3.3/website/templates/meme_verify.tmpl meme-5.3.3/website/templates/momo.tmpl meme-5.3.3/website/templates/momo_verify.tmpl meme-5.3.3/website/templates/request_redirect.tmpl meme-5.3.3/website/templates/show_gomo_dbs.tmpl meme-5.3.3/website/templates/show_motif_dbs.tmpl meme-5.3.3/website/templates/show_sequence_dbs.tmpl meme-5.3.3/website/templates/show_tgene_dbs.tmpl meme-5.3.3/website/templates/spamo.tmpl.in meme-5.3.3/website/templates/spamo_verify.tmpl meme-5.3.3/website/templates/status.tmpl meme-5.3.3/website/templates/streme.tmpl.in meme-5.3.3/website/templates/streme_verify.tmpl meme-5.3.3/website/templates/tgene.tmpl meme-5.3.3/website/templates/tgene_verify.tmpl meme-5.3.3/website/templates/tomtom.tmpl meme-5.3.3/website/templates/tomtom_verify.tmpl meme-5.3.3/website/templates/verify.tmpl meme-5.3.3/website/templates/whine.tmpl meme-5.3.3/website/src/au/ meme-5.3.3/website/src/au/edu/ meme-5.3.3/website/src/au/edu/uq/ meme-5.3.3/website/src/au/edu/uq/imb/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/template/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/BMString.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/FileCoord.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/GlobFilter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/JsonWr.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/MultiSourceStatus.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/Progress.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/SampleStats.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/util/SemanticVersion.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/AbstractFtpSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/FastaIndexer.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/FastaIndexer.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/FtpSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/PatternFileFilter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/SequenceProcessor.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/SequenceUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/Source.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.properties meme-5.3.3/website/src/au/edu/uq/imb/memesuite/template/HTMLSub.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/template/HTMLSubGenerator.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/template/HTMLTemplate.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/template/HTMLTemplateCache.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Ame.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Centrimo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ConfigurationLoader.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Dreme.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/EchoFile.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Fimo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Glam2.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Glam2Request.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Glam2scan.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Gomo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/JobStatus.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/LogoRequest.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Mast.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Mcast.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Meme.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Memechip.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/MemeRequest.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Momo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/PermanentRedirect.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ShowGomoDBs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ShowMotifDBs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ShowSequenceDBs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/ShowTgeneDBs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Spamo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Streme.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/SubmitJob.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Tgene.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/Tomtom.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/TomtomRequest.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentAdvancedOptions.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentBfile.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentFooter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentGlam2Motifs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentGomo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentHeader.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentJobDetails.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentLoci.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentMotifs.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSequenceAlphabet.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSequences.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSubmitReset.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentTgene.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/FeedbackFastaWriter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/FeedbackHandler.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/Glam2Validator.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/MotifValidator.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/PageComponent.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/StreamCopier.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/servlet/util/WebUtils.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/alph/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/ meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/JsonHandler.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/JsonHandlerAdapter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/JsonParser.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/JsonToken.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/json/JsonType.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataEvent.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataEventType.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataHandler.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataHandlerAdapter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataParseException.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataParser.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/html/HDataPullParser.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/FastaException.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/FastaHandler.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/FastaParseException.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/FastaParser.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/fasta/FastaWriter.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/io/alph/AlphParser.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/Category.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/DBList.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/GomoDB.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/GomoDBList.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/GomoDBSecondary.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/Listing.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/MotifDB.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/MotifDBFile.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/MotifDBList.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/SequenceDB.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/SequenceDBList.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/SequencePrior.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/SequenceVersion.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/SQL.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/TgeneDB.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/db/TgeneDBList.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/Alph.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/AlphabetDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/AlphStd.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/AlphType.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/Background.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/LociDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/LociInfo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/LociStats.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/MemeSuiteProperties.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/MotifDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/MotifInfo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/MotifStats.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/NamedFileDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/PsmDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/SequenceDataSource.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/SequenceInfo.java meme-5.3.3/website/src/au/edu/uq/imb/memesuite/data/SequenceStats.java meme-5.3.3/website/lib/axis.jar meme-5.3.3/website/lib/axis.LICENSE meme-5.3.3/website/lib/cog-axis.jar meme-5.3.3/website/lib/cog-jglobus.jar meme-5.3.3/website/lib/cog.LICENSE meme-5.3.3/website/lib/commons-discovery-0.5.jar meme-5.3.3/website/lib/commons-discovery.LICENSE meme-5.3.3/website/lib/commons-discovery.NOTICE meme-5.3.3/website/lib/commons-io-2.4.jar meme-5.3.3/website/lib/commons-io.LICENSE meme-5.3.3/website/lib/commons-io.NOTICE meme-5.3.3/website/lib/commons-logging-1.1.3.jar meme-5.3.3/website/lib/commons-logging.LICENSE meme-5.3.3/website/lib/commons-logging.NOTICE meme-5.3.3/website/lib/commons-net-3.3.jar meme-5.3.3/website/lib/commons-net.LICENSE meme-5.3.3/website/lib/commons-net.NOTICE meme-5.3.3/website/lib/javamail-1.4.3.jar meme-5.3.3/website/lib/jaxrpc.jar meme-5.3.3/website/lib/JSAP-2.1.jar meme-5.3.3/website/lib/JSAP.LICENSE meme-5.3.3/website/lib/jsoup-1.7.3.jar meme-5.3.3/website/lib/jsoup.LICENSE meme-5.3.3/website/lib/jtar-1.1.jar meme-5.3.3/website/lib/jtar.LICENSE meme-5.3.3/website/lib/opal-ws-2.5.jar meme-5.3.3/website/lib/sqlite-jdbc-3.7.2.jar meme-5.3.3/website/lib/sqlite-jdbc.LICENSE meme-5.3.3/website/lib/wsdl4j-1.6.3.jar meme-5.3.3/website/lib/wsdl4j.LICENSE meme-5.3.3/website/js/alphabet_parser.js meme-5.3.3/website/js/ame.js meme-5.3.3/website/js/bedchecker.js meme-5.3.3/website/js/bg_parser.js meme-5.3.3/website/js/centrimo.js meme-5.3.3/website/js/component_bfile.js meme-5.3.3/website/js/component_glam2motifs.js meme-5.3.3/website/js/component_loci.js meme-5.3.3/website/js/component_motifs.js meme-5.3.3/website/js/component_sequences.js meme-5.3.3/website/js/dreme.js meme-5.3.3/website/js/fasta-debug.js meme-5.3.3/website/js/fimo.js meme-5.3.3/website/js/glam2.js meme-5.3.3/website/js/glam2scan.js meme-5.3.3/website/js/gomo.js meme-5.3.3/website/js/mast.js meme-5.3.3/website/js/mcast.js meme-5.3.3/website/js/meme-chip.js meme-5.3.3/website/js/meme.js meme-5.3.3/website/js/menu-path.js meme-5.3.3/website/js/momo.js meme-5.3.3/website/js/motif_parser.js meme-5.3.3/website/js/selectdb.js meme-5.3.3/website/js/show_sequence_dbs.js meme-5.3.3/website/js/site.js meme-5.3.3/website/js/spamo.js meme-5.3.3/website/js/status.js meme-5.3.3/website/js/streme.js meme-5.3.3/website/js/tgene.js meme-5.3.3/website/js/tomtom.js meme-5.3.3/website/images/euclidean-eq.png meme-5.3.3/website/images/logo_alignment.png meme-5.3.3/website/images/new_icon.png meme-5.3.3/website/images/pearson-eq.png meme-5.3.3/website/images/sandelin-eq.png meme-5.3.3/website/css/component_bfile.css meme-5.3.3/website/css/component_glam2motifs.css meme-5.3.3/website/css/component_motifs.css meme-5.3.3/website/css/component_sequences.css meme-5.3.3/website/css/fasta-debug.css meme-5.3.3/website/css/show_sequence_dbs.css meme-5.3.3/website/css/status.css meme-5.3.3/website/css/tomtom.css meme-5.3.3/tests/ame/ meme-5.3.3/tests/centrimo/ meme-5.3.3/tests/clustalw2fasta/ meme-5.3.3/tests/common/ meme-5.3.3/tests/create-priors/ meme-5.3.3/tests/draw-mhmm/ meme-5.3.3/tests/dreme/ meme-5.3.3/tests/fasta-center/ meme-5.3.3/tests/fimo/ meme-5.3.3/tests/glam2/ meme-5.3.3/tests/glam2scan/ meme-5.3.3/tests/gomo/ meme-5.3.3/tests/Makefile.am meme-5.3.3/tests/Makefile.in meme-5.3.3/tests/mast/ meme-5.3.3/tests/mcast/ meme-5.3.3/tests/meme/ meme-5.3.3/tests/meme-chip/ meme-5.3.3/tests/mhmm/ meme-5.3.3/tests/mhmms/ meme-5.3.3/tests/mhmmscan/ meme-5.3.3/tests/momo/ meme-5.3.3/tests/motiph/ meme-5.3.3/tests/psp-gen/ meme-5.3.3/tests/qvalue/ meme-5.3.3/tests/scaffold/ meme-5.3.3/tests/scripts/ meme-5.3.3/tests/spamo/ meme-5.3.3/tests/streme/ meme-5.3.3/tests/tgene/ meme-5.3.3/tests/tomtom/ meme-5.3.3/tests/web/ meme-5.3.3/tests/web/Makefile.am meme-5.3.3/tests/web/Makefile.in meme-5.3.3/tests/tomtom/dpinteract.meme meme-5.3.3/tests/tomtom/Makefile.am meme-5.3.3/tests/tomtom/Makefile.in meme-5.3.3/tests/tomtom/tomtom.complete.out.allr.html meme-5.3.3/tests/tomtom/tomtom.complete.out.allr.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.blic1.html meme-5.3.3/tests/tomtom/tomtom.complete.out.blic1.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.blic5.html meme-5.3.3/tests/tomtom/tomtom.complete.out.blic5.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.ed.html meme-5.3.3/tests/tomtom/tomtom.complete.out.ed.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.kullback.html meme-5.3.3/tests/tomtom/tomtom.complete.out.kullback.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.pearson.html meme-5.3.3/tests/tomtom/tomtom.complete.out.pearson.tsv meme-5.3.3/tests/tomtom/tomtom.complete.out.sandelin.html meme-5.3.3/tests/tomtom/tomtom.complete.out.sandelin.tsv meme-5.3.3/tests/tomtom/tomtom.dna_with_covalent.html meme-5.3.3/tests/tomtom/tomtom.dna_with_covalent.tsv meme-5.3.3/tests/tomtom/tomtom.out.allr.html meme-5.3.3/tests/tomtom/tomtom.out.allr.tsv meme-5.3.3/tests/tomtom/tomtom.out.blic1.html meme-5.3.3/tests/tomtom/tomtom.out.blic1.tsv meme-5.3.3/tests/tomtom/tomtom.out.blic5.html meme-5.3.3/tests/tomtom/tomtom.out.blic5.tsv meme-5.3.3/tests/tomtom/tomtom.out.ed.html meme-5.3.3/tests/tomtom/tomtom.out.ed.tsv meme-5.3.3/tests/tomtom/tomtom.out.fish.tsv meme-5.3.3/tests/tomtom/tomtom.out.kullback.html meme-5.3.3/tests/tomtom/tomtom.out.kullback.tsv meme-5.3.3/tests/tomtom/tomtom.out.pearson.html meme-5.3.3/tests/tomtom/tomtom.out.pearson.tsv meme-5.3.3/tests/tomtom/tomtom.out.rms.tsv meme-5.3.3/tests/tomtom/tomtom.out.sandelin.html meme-5.3.3/tests/tomtom/tomtom.out.sandelin.tsv meme-5.3.3/tests/tgene/Expression/ meme-5.3.3/tests/tgene/gencode.v7.transcripts.chr21.gtf meme-5.3.3/tests/tgene/Histone/ meme-5.3.3/tests/tgene/Makefile.am meme-5.3.3/tests/tgene/Makefile.in meme-5.3.3/tests/tgene/P300.2x.bed meme-5.3.3/tests/tgene/p300_links.tsv meme-5.3.3/tests/tgene/p300_no_panel_links.tsv meme-5.3.3/tests/tgene/p300_no_panel_tgene.html meme-5.3.3/tests/tgene/p300_tgene.html meme-5.3.3/tests/tgene/Rxra.bed meme-5.3.3/tests/tgene/Rxra_links.tsv meme-5.3.3/tests/tgene/Rxra_tgene.html meme-5.3.3/tests/tgene/Histone/A549/ meme-5.3.3/tests/tgene/Histone/Ag04450/ meme-5.3.3/tests/tgene/Histone/Bj/ meme-5.3.3/tests/tgene/Histone/Gm12878/ meme-5.3.3/tests/tgene/Histone/H1hesc/ meme-5.3.3/tests/tgene/Histone/Helas3/ meme-5.3.3/tests/tgene/Histone/Hepg2/ meme-5.3.3/tests/tgene/Histone/Hmec/ meme-5.3.3/tests/tgene/Histone/Hsmm/ meme-5.3.3/tests/tgene/Histone/Huvec/ meme-5.3.3/tests/tgene/Histone/K562/ meme-5.3.3/tests/tgene/Histone/Mcf7/ meme-5.3.3/tests/tgene/Histone/Nhek/ meme-5.3.3/tests/tgene/Histone/Nhlf/ meme-5.3.3/tests/tgene/Histone/Sknshra/ meme-5.3.3/tests/tgene/Histone/Sknshra/dummy meme-5.3.3/tests/tgene/Histone/Nhlf/wgEncodeBroadHistoneNhlfH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Nhlf/wgEncodeBroadHistoneNhlfH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Nhek/wgEncodeBroadHistoneNhekH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Nhek/wgEncodeBroadHistoneNhekH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Mcf7/dummy meme-5.3.3/tests/tgene/Histone/K562/wgEncodeBroadHistoneK562H3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/K562/wgEncodeBroadHistoneK562H3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Huvec/wgEncodeBroadHistoneHuvecH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Huvec/wgEncodeBroadHistoneHuvecH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hsmm/wgEncodeBroadHistoneHsmmH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hsmm/wgEncodeBroadHistoneHsmmH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hmec/wgEncodeBroadHistoneHmecH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hmec/wgEncodeBroadHistoneHmecH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hepg2/wgEncodeBroadHistoneHepg2H3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Hepg2/wgEncodeBroadHistoneHepg2H3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Helas3/wgEncodeBroadHistoneHelas3H3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Helas3/wgEncodeBroadHistoneHelas3H3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/H1hesc/wgEncodeBroadHistoneH1hescH3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/H1hesc/wgEncodeBroadHistoneH1hescH3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Gm12878/wgEncodeBroadHistoneGm12878H3k27acStdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Gm12878/wgEncodeBroadHistoneGm12878H3k4me3StdPk.chr21.broadPeak meme-5.3.3/tests/tgene/Histone/Bj/dummy meme-5.3.3/tests/tgene/Histone/Ag04450/dummy meme-5.3.3/tests/tgene/Histone/A549/dummy meme-5.3.3/tests/tgene/Expression/A549/ meme-5.3.3/tests/tgene/Expression/Ag04450/ meme-5.3.3/tests/tgene/Expression/Bj/ meme-5.3.3/tests/tgene/Expression/Gm12878/ meme-5.3.3/tests/tgene/Expression/H1hesc/ meme-5.3.3/tests/tgene/Expression/Helas3/ meme-5.3.3/tests/tgene/Expression/Hepg2/ meme-5.3.3/tests/tgene/Expression/Hmec/ meme-5.3.3/tests/tgene/Expression/Hsmm/ meme-5.3.3/tests/tgene/Expression/Huvec/ meme-5.3.3/tests/tgene/Expression/K562/ meme-5.3.3/tests/tgene/Expression/Mcf7/ meme-5.3.3/tests/tgene/Expression/Nhek/ meme-5.3.3/tests/tgene/Expression/Nhlf/ meme-5.3.3/tests/tgene/Expression/Sknshra/ meme-5.3.3/tests/tgene/Expression/Sknshra/Cage.gtf meme-5.3.3/tests/tgene/Expression/Nhlf/dummy meme-5.3.3/tests/tgene/Expression/Nhek/Cage.gtf meme-5.3.3/tests/tgene/Expression/Mcf7/Cage.gtf meme-5.3.3/tests/tgene/Expression/K562/Cage.gtf meme-5.3.3/tests/tgene/Expression/Huvec/Cage.gtf meme-5.3.3/tests/tgene/Expression/Hsmm/dummy meme-5.3.3/tests/tgene/Expression/Hmec/dummy meme-5.3.3/tests/tgene/Expression/Hepg2/Cage.gtf meme-5.3.3/tests/tgene/Expression/Helas3/Cage.gtf meme-5.3.3/tests/tgene/Expression/H1hesc/Cage.gtf meme-5.3.3/tests/tgene/Expression/Gm12878/Cage.gtf meme-5.3.3/tests/tgene/Expression/Bj/Cage.gtf meme-5.3.3/tests/tgene/Expression/Ag04450/Cage.gtf meme-5.3.3/tests/tgene/Expression/A549/Cage.gtf meme-5.3.3/tests/streme/Makefile.am meme-5.3.3/tests/streme/Makefile.in meme-5.3.3/tests/streme/streme.adh.de.html meme-5.3.3/tests/streme/streme.adh.de.txt meme-5.3.3/tests/streme/streme.adh.de.xml meme-5.3.3/tests/streme/streme.crp0.de.html meme-5.3.3/tests/streme/streme.crp0.de.txt meme-5.3.3/tests/streme/streme.crp0.de.xml meme-5.3.3/tests/streme/streme.dna_with_covalent.de.html meme-5.3.3/tests/streme/streme.dna_with_covalent.de.txt meme-5.3.3/tests/streme/streme.dna_with_covalent.de.xml meme-5.3.3/tests/streme/streme.farntrans5.de.html meme-5.3.3/tests/streme/streme.farntrans5.de.txt meme-5.3.3/tests/streme/streme.farntrans5.de.xml meme-5.3.3/tests/streme/streme.INO_up800.de.html meme-5.3.3/tests/streme/streme.INO_up800.de.txt meme-5.3.3/tests/streme/streme.INO_up800.de.xml meme-5.3.3/tests/streme/streme.Klf1-200-100.de.html meme-5.3.3/tests/streme/streme.Klf1-200-100.de.txt meme-5.3.3/tests/streme/streme.Klf1-200-100.de.xml meme-5.3.3/tests/streme/streme.Klf1-200.cd.html meme-5.3.3/tests/streme/streme.Klf1-200.cd.txt meme-5.3.3/tests/streme/streme.Klf1-200.cd.xml meme-5.3.3/tests/streme/streme.lipocalin.de.html meme-5.3.3/tests/streme/streme.lipocalin.de.txt meme-5.3.3/tests/streme/streme.lipocalin.de.xml meme-5.3.3/tests/streme/streme.Puf3p.de.html meme-5.3.3/tests/streme/streme.Puf3p.de.txt meme-5.3.3/tests/streme/streme.Puf3p.de.xml meme-5.3.3/tests/spamo/dna_with_covalent.html meme-5.3.3/tests/spamo/dna_with_covalent.tsv meme-5.3.3/tests/spamo/dumpseqs.html meme-5.3.3/tests/spamo/dumpseqs.seqs_MA0039.2_db1_MA0039.2.tsv meme-5.3.3/tests/spamo/dumpseqs.seqs_MA0039.2_db1_MA0140.1.tsv meme-5.3.3/tests/spamo/dumpseqs.tsv meme-5.3.3/tests/spamo/limits.fasta meme-5.3.3/tests/spamo/limits.html meme-5.3.3/tests/spamo/limits.tsv meme-5.3.3/tests/spamo/Makefile.am meme-5.3.3/tests/spamo/Makefile.in meme-5.3.3/tests/spamo/primary.meme meme-5.3.3/tests/spamo/random.fasta meme-5.3.3/tests/spamo/random.html meme-5.3.3/tests/spamo/random.tsv meme-5.3.3/tests/spamo/secondary.meme meme-5.3.3/tests/scripts/ama.test meme-5.3.3/tests/scripts/ame.test meme-5.3.3/tests/scripts/centrimo.test meme-5.3.3/tests/scripts/clustalw2fasta.test meme-5.3.3/tests/scripts/create_priors.test meme-5.3.3/tests/scripts/dreme.test meme-5.3.3/tests/scripts/fasta-center.test meme-5.3.3/tests/scripts/fasta-dinucleotide-shuffle.test meme-5.3.3/tests/scripts/fasta-io.test meme-5.3.3/tests/scripts/fimo.test meme-5.3.3/tests/scripts/glam2.test meme-5.3.3/tests/scripts/glam2scan.test meme-5.3.3/tests/scripts/gomo.test meme-5.3.3/tests/scripts/Makefile.am meme-5.3.3/tests/scripts/Makefile.in meme-5.3.3/tests/scripts/mast.test meme-5.3.3/tests/scripts/mcast.test meme-5.3.3/tests/scripts/meme-chip.test meme-5.3.3/tests/scripts/meme.test meme-5.3.3/tests/scripts/mhmm-io.test meme-5.3.3/tests/scripts/mhmm_core.test meme-5.3.3/tests/scripts/mhmms.test meme-5.3.3/tests/scripts/mhmmscan.test meme-5.3.3/tests/scripts/momo.test meme-5.3.3/tests/scripts/motif-in.test meme-5.3.3/tests/scripts/motiph.test meme-5.3.3/tests/scripts/pspgen.test meme-5.3.3/tests/scripts/qvalue.test meme-5.3.3/tests/scripts/shadow.test meme-5.3.3/tests/scripts/spamo.test meme-5.3.3/tests/scripts/streme.test meme-5.3.3/tests/scripts/test_driver.pl.in meme-5.3.3/tests/scripts/tgene.test meme-5.3.3/tests/scripts/tomtom.test meme-5.3.3/tests/scaffold/crp0.fasta meme-5.3.3/tests/scaffold/crp0.meme-io meme-5.3.3/tests/scaffold/crp0.prior meme-5.3.3/tests/scaffold/lipo.fasta meme-5.3.3/tests/scaffold/lipo.meme-io meme-5.3.3/tests/scaffold/lipo.prior meme-5.3.3/tests/scaffold/Makefile.am meme-5.3.3/tests/scaffold/Makefile.in meme-5.3.3/tests/qvalue/Makefile.am meme-5.3.3/tests/qvalue/Makefile.in meme-5.3.3/tests/qvalue/null.txt meme-5.3.3/tests/qvalue/observed.out meme-5.3.3/tests/qvalue/observed.txt meme-5.3.3/tests/qvalue/uniform.out meme-5.3.3/tests/qvalue/uniform.txt meme-5.3.3/tests/psp-gen/all-A.fasta meme-5.3.3/tests/psp-gen/Makefile.am meme-5.3.3/tests/psp-gen/Makefile.in meme-5.3.3/tests/psp-gen/one-peak-dna-revcomp.psp meme-5.3.3/tests/psp-gen/one-peak-dna.fasta meme-5.3.3/tests/psp-gen/one-peak-protein.fasta meme-5.3.3/tests/psp-gen/one-peak-protein.psp meme-5.3.3/tests/psp-gen/README meme-5.3.3/tests/motiph/Makefile.am meme-5.3.3/tests/motiph/Makefile.in meme-5.3.3/tests/motiph/MCM1.meme.html meme-5.3.3/tests/motiph/motiph-motif23.gff meme-5.3.3/tests/motiph/motiph.gff meme-5.3.3/tests/motiph/shadow.gff meme-5.3.3/tests/motiph/spiked.aln meme-5.3.3/tests/motiph/spiked.fasta meme-5.3.3/tests/motiph/yeast.tree meme-5.3.3/tests/momo/default-comet-no-fasta.html meme-5.3.3/tests/momo/default-comet-no-fasta.tsv meme-5.3.3/tests/momo/default-comet-no-fasta.txt meme-5.3.3/tests/momo/default-msgf-no-fasta.html meme-5.3.3/tests/momo/default-msgf-no-fasta.tsv meme-5.3.3/tests/momo/default-msgf-no-fasta.txt meme-5.3.3/tests/momo/default-no-fasta-multi.html meme-5.3.3/tests/momo/default-no-fasta-multi.tsv meme-5.3.3/tests/momo/default-no-fasta-multi.txt meme-5.3.3/tests/momo/default-no-fasta.html meme-5.3.3/tests/momo/default-no-fasta.tsv meme-5.3.3/tests/momo/default-no-fasta.txt meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-fasta.html meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-fasta.tsv meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-fasta.txt meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-raw.html meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-raw.tsv meme-5.3.3/tests/momo/default-with-fasta-no-mass-in-motif-names-raw.txt meme-5.3.3/tests/momo/default-with-fasta.html meme-5.3.3/tests/momo/default-with-fasta.tsv meme-5.3.3/tests/momo/default-with-fasta.txt meme-5.3.3/tests/momo/elim0.html meme-5.3.3/tests/momo/elim0.tsv meme-5.3.3/tests/momo/elim0.txt meme-5.3.3/tests/momo/elim3.html meme-5.3.3/tests/momo/elim3.tsv meme-5.3.3/tests/momo/elim3.txt meme-5.3.3/tests/momo/ensembl_Plasmodium_falciparum_38.200.fa meme-5.3.3/tests/momo/filterxcorrrankle3.html meme-5.3.3/tests/momo/filterxcorrrankle3.tsv meme-5.3.3/tests/momo/filterxcorrrankle3.txt meme-5.3.3/tests/momo/Makefile.am meme-5.3.3/tests/momo/Makefile.in meme-5.3.3/tests/momo/modl-db-background.html meme-5.3.3/tests/momo/modl-db-background.tsv meme-5.3.3/tests/momo/modl-db-background.txt meme-5.3.3/tests/momo/modl-default.html meme-5.3.3/tests/momo/modl-default.tsv meme-5.3.3/tests/momo/modl-default.txt meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names-bg-kmers-only-bgfreqs.html meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names-bg-kmers-only-bgfreqs.tsv meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names-bg-kmers-only-bgfreqs.txt meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names.html meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names.tsv meme-5.3.3/tests/momo/mtfx-s0.05-c1-no-mass-in-motif-names.txt meme-5.3.3/tests/momo/mtfx-s0.05-c1-smpmT.html meme-5.3.3/tests/momo/mtfx-s0.05-c1-smpmT.tsv meme-5.3.3/tests/momo/mtfx-s0.05-c1-smpmT.txt meme-5.3.3/tests/momo/mtfx-s0.05-c1.html meme-5.3.3/tests/momo/mtfx-s0.05-c1.tsv meme-5.3.3/tests/momo/mtfx-s0.05-c1.txt meme-5.3.3/tests/momo/single-motif-per-mass.html meme-5.3.3/tests/momo/single-motif-per-mass.tsv meme-5.3.3/tests/momo/single-motif-per-mass.txt meme-5.3.3/tests/momo/small-comet-mod.txt meme-5.3.3/tests/momo/small-msgf-mod.txt meme-5.3.3/tests/momo/small-tide-mod-1-out-of-2.txt meme-5.3.3/tests/momo/small-tide-mod-2-out-of-2.txt meme-5.3.3/tests/momo/small-tide-mod-phospho.fasta meme-5.3.3/tests/momo/small-tide-mod-phospho.txt meme-5.3.3/tests/momo/small-tide-mod.txt meme-5.3.3/tests/momo/small-yeast-prealigned-no-unknowns.txt meme-5.3.3/tests/momo/small-yeast.fasta meme-5.3.3/tests/mhmmscan/Makefile.am meme-5.3.3/tests/mhmmscan/Makefile.in meme-5.3.3/tests/mhmmscan/mhmmscan.txt meme-5.3.3/tests/mhmms/crp0.complete.all.mhmms meme-5.3.3/tests/mhmms/crp0.complete.fim.all.mhmms meme-5.3.3/tests/mhmms/crp0.complete.fim.single.mhmms meme-5.3.3/tests/mhmms/crp0.complete.single.mhmms meme-5.3.3/tests/mhmms/crp0.complete.spacer.all.mhmms meme-5.3.3/tests/mhmms/crp0.complete.spacer.single.mhmms meme-5.3.3/tests/mhmms/crp0.linear.all.mhmms meme-5.3.3/tests/mhmms/crp0.linear.fim.all.mhmms meme-5.3.3/tests/mhmms/crp0.linear.fim.single.mhmms meme-5.3.3/tests/mhmms/crp0.linear.single.mhmms meme-5.3.3/tests/mhmms/crp0.linear.spacer.all.mhmms meme-5.3.3/tests/mhmms/crp0.linear.spacer.single.mhmms meme-5.3.3/tests/mhmms/crp0.star.all.mhmms meme-5.3.3/tests/mhmms/crp0.star.single.mhmms meme-5.3.3/tests/mhmms/crp0.star.spacer.all.mhmms meme-5.3.3/tests/mhmms/crp0.star.spacer.single.mhmms meme-5.3.3/tests/mhmms/lipo.complete.all.mhmms meme-5.3.3/tests/mhmms/lipo.complete.fim.all.mhmms meme-5.3.3/tests/mhmms/lipo.complete.fim.single.mhmms meme-5.3.3/tests/mhmms/lipo.complete.single.mhmms meme-5.3.3/tests/mhmms/lipo.complete.spacer.all.mhmms meme-5.3.3/tests/mhmms/lipo.complete.spacer.single.mhmms meme-5.3.3/tests/mhmms/lipo.linear.all.mhmms meme-5.3.3/tests/mhmms/lipo.linear.fim.all.mhmms meme-5.3.3/tests/mhmms/lipo.linear.fim.single.mhmms meme-5.3.3/tests/mhmms/lipo.linear.single.mhmms meme-5.3.3/tests/mhmms/lipo.linear.spacer.all.mhmms meme-5.3.3/tests/mhmms/lipo.linear.spacer.single.mhmms meme-5.3.3/tests/mhmms/lipo.star.all.mhmms meme-5.3.3/tests/mhmms/lipo.star.single.mhmms meme-5.3.3/tests/mhmms/lipo.star.spacer.all.mhmms meme-5.3.3/tests/mhmms/lipo.star.spacer.single.mhmms meme-5.3.3/tests/mhmms/Makefile.am meme-5.3.3/tests/mhmms/Makefile.in meme-5.3.3/tests/mhmms/r1584.fasta meme-5.3.3/tests/mhmms/r1584.hmm meme-5.3.3/tests/mhmms/r1584.mhmms meme-5.3.3/tests/mhmms/r1635.fasta meme-5.3.3/tests/mhmms/r1635.global.mhmms meme-5.3.3/tests/mhmms/r1635.maxseqs.mhmms meme-5.3.3/tests/mhmms/r1635.mhmms meme-5.3.3/tests/mhmm/crp0.complete.fim.mhmm meme-5.3.3/tests/mhmm/crp0.complete.mhmm meme-5.3.3/tests/mhmm/crp0.complete.spacer.mhmm meme-5.3.3/tests/mhmm/crp0.linear.fim.mhmm meme-5.3.3/tests/mhmm/crp0.linear.mhmm meme-5.3.3/tests/mhmm/crp0.linear.spacer.mhmm meme-5.3.3/tests/mhmm/crp0.star.mhmm meme-5.3.3/tests/mhmm/crp0.star.spacer.mhmm meme-5.3.3/tests/mhmm/lipo.complete.fim.mhmm meme-5.3.3/tests/mhmm/lipo.complete.mhmm meme-5.3.3/tests/mhmm/lipo.complete.spacer.mhmm meme-5.3.3/tests/mhmm/lipo.linear.fim.mhmm meme-5.3.3/tests/mhmm/lipo.linear.mhmm meme-5.3.3/tests/mhmm/lipo.linear.spacer.mhmm meme-5.3.3/tests/mhmm/lipo.star.mhmm meme-5.3.3/tests/mhmm/lipo.star.spacer.mhmm meme-5.3.3/tests/mhmm/Makefile.am meme-5.3.3/tests/mhmm/Makefile.in meme-5.3.3/tests/mhmm/README meme-5.3.3/tests/meme-chip/combined.meme meme-5.3.3/tests/meme-chip/JASPAR_CORE_2014_vertebrates.meme meme-5.3.3/tests/meme-chip/Klf1.100.fa meme-5.3.3/tests/meme-chip/Makefile.am meme-5.3.3/tests/meme-chip/Makefile.in meme-5.3.3/tests/meme-chip/meme-chip.html meme-5.3.3/tests/meme-chip/meme-chip_dna_with_covalent.html meme-5.3.3/tests/meme-chip/meme-chip_dna_with_covalent_combined.meme meme-5.3.3/tests/meme-chip/meme-chip_dna_with_covalent_summary.tsv meme-5.3.3/tests/meme-chip/summary.tsv meme-5.3.3/tests/meme/Makefile.am meme-5.3.3/tests/meme/Makefile.in meme-5.3.3/tests/meme/meme.adh.classic.anr.html meme-5.3.3/tests/meme/meme.adh.classic.anr.txt meme-5.3.3/tests/meme/meme.adh.classic.anr.xml meme-5.3.3/tests/meme/meme.adh.classic.oops.html meme-5.3.3/tests/meme/meme.adh.classic.oops.txt meme-5.3.3/tests/meme/meme.adh.classic.oops.xml meme-5.3.3/tests/meme/meme.adh.classic.zoops.html meme-5.3.3/tests/meme/meme.adh.classic.zoops.txt meme-5.3.3/tests/meme/meme.adh.classic.zoops.xml meme-5.3.3/tests/meme/meme.adh.de.anr.html meme-5.3.3/tests/meme/meme.adh.de.anr.txt meme-5.3.3/tests/meme/meme.adh.de.anr.xml meme-5.3.3/tests/meme/meme.adh.de.oops.html meme-5.3.3/tests/meme/meme.adh.de.oops.txt meme-5.3.3/tests/meme/meme.adh.de.oops.xml meme-5.3.3/tests/meme/meme.adh.de.zoops.html meme-5.3.3/tests/meme/meme.adh.de.zoops.txt meme-5.3.3/tests/meme/meme.adh.de.zoops.xml meme-5.3.3/tests/meme/meme.adh.nz.anr.html meme-5.3.3/tests/meme/meme.adh.nz.anr.txt meme-5.3.3/tests/meme/meme.adh.nz.anr.xml meme-5.3.3/tests/meme/meme.adh.nz.oops.html meme-5.3.3/tests/meme/meme.adh.nz.oops.txt meme-5.3.3/tests/meme/meme.adh.nz.oops.xml meme-5.3.3/tests/meme/meme.adh.nz.zoops.html meme-5.3.3/tests/meme/meme.adh.nz.zoops.txt meme-5.3.3/tests/meme/meme.adh.nz.zoops.xml meme-5.3.3/tests/meme/meme.adh.se.anr.html meme-5.3.3/tests/meme/meme.adh.se.anr.txt meme-5.3.3/tests/meme/meme.adh.se.anr.xml meme-5.3.3/tests/meme/meme.adh.se.oops.html meme-5.3.3/tests/meme/meme.adh.se.oops.txt meme-5.3.3/tests/meme/meme.adh.se.oops.xml meme-5.3.3/tests/meme/meme.adh.se.zoops.html meme-5.3.3/tests/meme/meme.adh.se.zoops.txt meme-5.3.3/tests/meme/meme.adh.se.zoops.xml meme-5.3.3/tests/meme/meme.crp0.classic.anr.html meme-5.3.3/tests/meme/meme.crp0.classic.anr.txt meme-5.3.3/tests/meme/meme.crp0.classic.anr.xml meme-5.3.3/tests/meme/meme.crp0.classic.oops.html meme-5.3.3/tests/meme/meme.crp0.classic.oops.txt meme-5.3.3/tests/meme/meme.crp0.classic.oops.xml meme-5.3.3/tests/meme/meme.crp0.classic.zoops.html meme-5.3.3/tests/meme/meme.crp0.classic.zoops.txt meme-5.3.3/tests/meme/meme.crp0.classic.zoops.xml meme-5.3.3/tests/meme/meme.crp0.de.anr.html meme-5.3.3/tests/meme/meme.crp0.de.anr.txt meme-5.3.3/tests/meme/meme.crp0.de.anr.xml meme-5.3.3/tests/meme/meme.crp0.de.oops.html meme-5.3.3/tests/meme/meme.crp0.de.oops.txt meme-5.3.3/tests/meme/meme.crp0.de.oops.xml meme-5.3.3/tests/meme/meme.crp0.de.zoops.html meme-5.3.3/tests/meme/meme.crp0.de.zoops.txt meme-5.3.3/tests/meme/meme.crp0.de.zoops.xml meme-5.3.3/tests/meme/meme.crp0.nz.anr.html meme-5.3.3/tests/meme/meme.crp0.nz.anr.txt meme-5.3.3/tests/meme/meme.crp0.nz.anr.xml meme-5.3.3/tests/meme/meme.crp0.nz.oops.html meme-5.3.3/tests/meme/meme.crp0.nz.oops.txt meme-5.3.3/tests/meme/meme.crp0.nz.oops.xml meme-5.3.3/tests/meme/meme.crp0.nz.zoops.html meme-5.3.3/tests/meme/meme.crp0.nz.zoops.txt meme-5.3.3/tests/meme/meme.crp0.nz.zoops.xml meme-5.3.3/tests/meme/meme.crp0.se.anr.html meme-5.3.3/tests/meme/meme.crp0.se.anr.txt meme-5.3.3/tests/meme/meme.crp0.se.anr.xml meme-5.3.3/tests/meme/meme.crp0.se.oops.html meme-5.3.3/tests/meme/meme.crp0.se.oops.txt meme-5.3.3/tests/meme/meme.crp0.se.oops.xml meme-5.3.3/tests/meme/meme.crp0.se.zoops.html meme-5.3.3/tests/meme/meme.crp0.se.zoops.txt meme-5.3.3/tests/meme/meme.crp0.se.zoops.xml meme-5.3.3/tests/meme/meme.farntrans5.classic.anr.html meme-5.3.3/tests/meme/meme.farntrans5.classic.anr.txt meme-5.3.3/tests/meme/meme.farntrans5.classic.anr.xml meme-5.3.3/tests/meme/meme.farntrans5.classic.oops.html meme-5.3.3/tests/meme/meme.farntrans5.classic.oops.txt meme-5.3.3/tests/meme/meme.farntrans5.classic.oops.xml meme-5.3.3/tests/meme/meme.farntrans5.classic.zoops.html meme-5.3.3/tests/meme/meme.farntrans5.classic.zoops.txt meme-5.3.3/tests/meme/meme.farntrans5.classic.zoops.xml meme-5.3.3/tests/meme/meme.INO_up800.classic.anr.html meme-5.3.3/tests/meme/meme.INO_up800.classic.anr.txt meme-5.3.3/tests/meme/meme.INO_up800.classic.anr.xml meme-5.3.3/tests/meme/meme.INO_up800.classic.oops.html meme-5.3.3/tests/meme/meme.INO_up800.classic.oops.txt meme-5.3.3/tests/meme/meme.INO_up800.classic.oops.xml meme-5.3.3/tests/meme/meme.INO_up800.classic.zoops.html meme-5.3.3/tests/meme/meme.INO_up800.classic.zoops.txt meme-5.3.3/tests/meme/meme.INO_up800.classic.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.anr.html meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.anr.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.anr.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.oops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.classic.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.de.anr.html meme-5.3.3/tests/meme/meme.Klf1-200-100.de.anr.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.de.anr.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.de.oops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.de.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.de.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.de.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.de.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.de.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.anr.html meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.anr.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.anr.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.oops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.nz.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.se.anr.html meme-5.3.3/tests/meme/meme.Klf1-200-100.se.anr.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.se.anr.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.se.oops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.se.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.se.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200-100.se.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200-100.se.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200-100.se.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200.cd.oops.html meme-5.3.3/tests/meme/meme.Klf1-200.cd.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200.cd.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200.cd.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200.cd.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200.cd.zoops.xml meme-5.3.3/tests/meme/meme.Klf1-200.ce.oops.html meme-5.3.3/tests/meme/meme.Klf1-200.ce.oops.txt meme-5.3.3/tests/meme/meme.Klf1-200.ce.oops.xml meme-5.3.3/tests/meme/meme.Klf1-200.ce.zoops.html meme-5.3.3/tests/meme/meme.Klf1-200.ce.zoops.txt meme-5.3.3/tests/meme/meme.Klf1-200.ce.zoops.xml meme-5.3.3/tests/meme/meme.lex0.zoops.txt meme-5.3.3/tests/meme/meme.lipocalin.classic.anr.html meme-5.3.3/tests/meme/meme.lipocalin.classic.anr.txt meme-5.3.3/tests/meme/meme.lipocalin.classic.anr.xml meme-5.3.3/tests/meme/meme.lipocalin.classic.oops.html meme-5.3.3/tests/meme/meme.lipocalin.classic.oops.txt meme-5.3.3/tests/meme/meme.lipocalin.classic.oops.xml meme-5.3.3/tests/meme/meme.lipocalin.classic.zoops.html meme-5.3.3/tests/meme/meme.lipocalin.classic.zoops.txt meme-5.3.3/tests/meme/meme.lipocalin.classic.zoops.xml meme-5.3.3/tests/meme/meme.psp_test.classic.zoops.html meme-5.3.3/tests/meme/meme.psp_test.classic.zoops.txt meme-5.3.3/tests/meme/meme.psp_test.classic.zoops.xml meme-5.3.3/tests/mcast/lex0.zoops.cisml meme-5.3.3/tests/mcast/lex0.zoops.gff meme-5.3.3/tests/mcast/lex0.zoops.html meme-5.3.3/tests/mcast/lex0.zoops.tsv meme-5.3.3/tests/mcast/lex0.zoops.xml meme-5.3.3/tests/mcast/Makefile.am meme-5.3.3/tests/mcast/Makefile.in meme-5.3.3/tests/mcast/parse_genomic.cisml meme-5.3.3/tests/mcast/parse_genomic.gff meme-5.3.3/tests/mcast/parse_genomic.html meme-5.3.3/tests/mcast/parse_genomic.tsv meme-5.3.3/tests/mcast/parse_genomic.xml meme-5.3.3/tests/mast/Makefile.am meme-5.3.3/tests/mast/Makefile.in meme-5.3.3/tests/mast/mast.adh.classic.anr.html.xml meme-5.3.3/tests/mast/mast.adh.classic.anr.mini-drosoph.html.xml meme-5.3.3/tests/mast/mast.adh.classic.anr.mini-drosoph.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.anr.mini-drosoph.xml.xml meme-5.3.3/tests/mast/mast.adh.classic.anr.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.anr.xml.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.html.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.mini-drosoph.html.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.mini-drosoph.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.mini-drosoph.xml.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.oops.xml.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.html.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.mini-drosoph.html.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.mini-drosoph.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.mini-drosoph.xml.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.txt.xml meme-5.3.3/tests/mast/mast.adh.classic.zoops.xml.xml meme-5.3.3/tests/mast/mast.adh.de.oops.html.html meme-5.3.3/tests/mast/mast.adh.de.oops.html.txt meme-5.3.3/tests/mast/mast.adh.de.oops.html.xml meme-5.3.3/tests/mast/mast.adh.de.oops.xml.html meme-5.3.3/tests/mast/mast.adh.de.oops.xml.txt meme-5.3.3/tests/mast/mast.adh.de.oops.xml.xml meme-5.3.3/tests/mast/mast.adh.de.zoops.html.html meme-5.3.3/tests/mast/mast.adh.de.zoops.html.txt meme-5.3.3/tests/mast/mast.adh.de.zoops.html.xml meme-5.3.3/tests/mast/mast.adh.de.zoops.txt.html meme-5.3.3/tests/mast/mast.adh.de.zoops.txt.txt meme-5.3.3/tests/mast/mast.adh.de.zoops.txt.xml meme-5.3.3/tests/mast/mast.crp0.cd.oops.html.html meme-5.3.3/tests/mast/mast.crp0.cd.oops.html.txt meme-5.3.3/tests/mast/mast.crp0.cd.oops.html.xml meme-5.3.3/tests/mast/mast.crp0.cd.zoops.txt.html meme-5.3.3/tests/mast/mast.crp0.cd.zoops.txt.txt meme-5.3.3/tests/mast/mast.crp0.cd.zoops.txt.xml meme-5.3.3/tests/mast/mast.crp0.classic.anr.html.xml meme-5.3.3/tests/mast/mast.crp0.classic.oops.txt.xml meme-5.3.3/tests/mast/mast.crp0.classic.zoops.xml.xml meme-5.3.3/tests/mast/mast.crp0.de.oops.txt.html meme-5.3.3/tests/mast/mast.crp0.de.oops.txt.txt meme-5.3.3/tests/mast/mast.crp0.de.oops.txt.xml meme-5.3.3/tests/mast/mast.crp0.de.zoops.xml.html meme-5.3.3/tests/mast/mast.crp0.de.zoops.xml.txt meme-5.3.3/tests/mast/mast.crp0.de.zoops.xml.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.anr.html.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.anr.txt.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.anr.xml.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.oops.html.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.oops.txt.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.oops.xml.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.zoops.html.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.zoops.txt.xml meme-5.3.3/tests/mast/mast.farntrans5.classic.zoops.xml.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.anr.html.html meme-5.3.3/tests/mast/mast.INO_up800.classic.anr.html.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.anr.txt.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.anr.xml.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.oops.html.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.oops.txt.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.oops.xml.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.zoops.html.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.zoops.txt.xml meme-5.3.3/tests/mast/mast.INO_up800.classic.zoops.xml.xml meme-5.3.3/tests/mast/mast.Klf1-200.cd.oops.xml.html meme-5.3.3/tests/mast/mast.Klf1-200.cd.oops.xml.txt meme-5.3.3/tests/mast/mast.Klf1-200.cd.oops.xml.xml meme-5.3.3/tests/mast/mast.Klf1-200.cd.zoops.html.html meme-5.3.3/tests/mast/mast.Klf1-200.cd.zoops.html.txt meme-5.3.3/tests/mast/mast.Klf1-200.cd.zoops.html.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.anr.html.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.anr.txt.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.anr.xml.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.oops.html.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.oops.txt.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.oops.xml.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.zoops.html.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.zoops.txt.xml meme-5.3.3/tests/mast/mast.lipocalin.classic.zoops.xml.xml meme-5.3.3/tests/gomo/ama.nozscoring.xml meme-5.3.3/tests/gomo/ama.redundant.xml meme-5.3.3/tests/gomo/ama.withMaxodds.xml meme-5.3.3/tests/gomo/ama.zscoring.xml meme-5.3.3/tests/gomo/GO2Gene.map.csv meme-5.3.3/tests/gomo/gomo.multipleSpecies.tsv meme-5.3.3/tests/gomo/gomo.smallthreshold.tsv meme-5.3.3/tests/gomo/Makefile.am meme-5.3.3/tests/gomo/Makefile.in meme-5.3.3/tests/gomo/motif.meme.txt meme-5.3.3/tests/gomo/seqs.bg meme-5.3.3/tests/gomo/seqs.fasta meme-5.3.3/tests/gomo/seqs.norc.bg meme-5.3.3/tests/gomo/seqs_red.fasta meme-5.3.3/tests/glam2scan/glam2scan.txt meme-5.3.3/tests/glam2scan/Makefile.am meme-5.3.3/tests/glam2scan/Makefile.in meme-5.3.3/tests/glam2/glam2.txt meme-5.3.3/tests/glam2/Makefile.am meme-5.3.3/tests/glam2/Makefile.in meme-5.3.3/tests/fimo/fimo-motif23.tsv meme-5.3.3/tests/fimo/fimo-motif23.xml meme-5.3.3/tests/fimo/fimo-priors-genomic.tsv meme-5.3.3/tests/fimo/fimo-priors.tsv meme-5.3.3/tests/fimo/fimo.tsv meme-5.3.3/tests/fimo/fimo.xml meme-5.3.3/tests/fimo/GCN4.meme.txt meme-5.3.3/tests/fimo/GCN4_YPD-genomic.fasta meme-5.3.3/tests/fimo/GCN4_YPD-genomic.psp meme-5.3.3/tests/fimo/GCN4_YPD.fasta meme-5.3.3/tests/fimo/GCN4_YPD.psp meme-5.3.3/tests/fimo/Makefile meme-5.3.3/tests/fimo/Makefile.am meme-5.3.3/tests/fimo/Makefile.in meme-5.3.3/tests/fimo/MCM1.meme.html meme-5.3.3/tests/fimo/prior.dist.txt meme-5.3.3/tests/fimo/spiked.fasta meme-5.3.3/tests/fasta-center/Makefile.am meme-5.3.3/tests/fasta-center/Makefile.in meme-5.3.3/tests/fasta-center/mid3.fasta meme-5.3.3/tests/fasta-center/README meme-5.3.3/tests/dreme/basic.xml meme-5.3.3/tests/dreme/Makefile.am meme-5.3.3/tests/dreme/Makefile.in meme-5.3.3/tests/dreme/norc.xml meme-5.3.3/tests/draw-mhmm/crp0.complete.fim.gvz meme-5.3.3/tests/draw-mhmm/crp0.complete.gvz meme-5.3.3/tests/draw-mhmm/crp0.complete.spacer.gvz meme-5.3.3/tests/draw-mhmm/crp0.linear.fim.gvz meme-5.3.3/tests/draw-mhmm/crp0.linear.gvz meme-5.3.3/tests/draw-mhmm/crp0.linear.spacer.gvz meme-5.3.3/tests/draw-mhmm/crp0.star.gvz meme-5.3.3/tests/draw-mhmm/crp0.star.spacer.gvz meme-5.3.3/tests/draw-mhmm/lipo.complete.fim.gvz meme-5.3.3/tests/draw-mhmm/lipo.complete.gvz meme-5.3.3/tests/draw-mhmm/lipo.complete.spacer.gvz meme-5.3.3/tests/draw-mhmm/lipo.linear.fim.gvz meme-5.3.3/tests/draw-mhmm/lipo.linear.gvz meme-5.3.3/tests/draw-mhmm/lipo.linear.spacer.gvz meme-5.3.3/tests/draw-mhmm/lipo.star.gvz meme-5.3.3/tests/draw-mhmm/lipo.star.spacer.gvz meme-5.3.3/tests/draw-mhmm/Makefile.am meme-5.3.3/tests/draw-mhmm/Makefile.in meme-5.3.3/tests/draw-mhmm/README meme-5.3.3/tests/create-priors/chrX.fa meme-5.3.3/tests/create-priors/DNaseHS_gm12878.wig meme-5.3.3/tests/create-priors/Makefile.am meme-5.3.3/tests/create-priors/Makefile.in meme-5.3.3/tests/create-priors/priors.dist meme-5.3.3/tests/create-priors/priors.wig meme-5.3.3/tests/common/adh.s meme-5.3.3/tests/common/alphabet_dna.txt meme-5.3.3/tests/common/alphabet_rna.txt meme-5.3.3/tests/common/At.s meme-5.3.3/tests/common/chr22.fasta meme-5.3.3/tests/common/crp0-test.fasta meme-5.3.3/tests/common/crp0.fasta meme-5.3.3/tests/common/crp0.meme.html meme-5.3.3/tests/common/crp0.meme.txt meme-5.3.3/tests/common/crp0.meme.xml meme-5.3.3/tests/common/crp0.s meme-5.3.3/tests/common/dna_with_covalent.alph meme-5.3.3/tests/common/dna_with_covalent.bg meme-5.3.3/tests/common/dna_with_covalent.fa meme-5.3.3/tests/common/dna_with_covalent.meme meme-5.3.3/tests/common/dros.fasta meme-5.3.3/tests/common/dros.oops.html meme-5.3.3/tests/common/extended_dna.alph meme-5.3.3/tests/common/farntrans5.s meme-5.3.3/tests/common/INO_up800.s meme-5.3.3/tests/common/Jaspar-subset.meme meme-5.3.3/tests/common/Jaspar-subset2.meme meme-5.3.3/tests/common/Klf1-200-100-shuffled.py2.fa meme-5.3.3/tests/common/Klf1-200-100-shuffled.py3.fa meme-5.3.3/tests/common/Klf1-200-100.combined.fa meme-5.3.3/tests/common/Klf1-200-100.combined.nofasta.fa meme-5.3.3/tests/common/Klf1-200-100.fa meme-5.3.3/tests/common/Klf1-200-100.no_fasta.fa meme-5.3.3/tests/common/Klf1-200.fa meme-5.3.3/tests/common/Klf1.fa meme-5.3.3/tests/common/lex0.s meme-5.3.3/tests/common/lipo-test.fasta meme-5.3.3/tests/common/lipo.fasta meme-5.3.3/tests/common/lipo.meme.html meme-5.3.3/tests/common/lipo.meme.old.html meme-5.3.3/tests/common/lipocalin.s meme-5.3.3/tests/common/Makefile.am meme-5.3.3/tests/common/Makefile.in meme-5.3.3/tests/common/MCM1.fasta meme-5.3.3/tests/common/mini-drosoph.s meme-5.3.3/tests/common/motif.crp0/ meme-5.3.3/tests/common/motif.Puf3p/ meme-5.3.3/tests/common/non-uniform.bg meme-5.3.3/tests/common/noq.s meme-5.3.3/tests/common/nr.freq meme-5.3.3/tests/common/nt.freq meme-5.3.3/tests/common/psp_test.psp meme-5.3.3/tests/common/psp_test.s meme-5.3.3/tests/common/Puf3p-20.s meme-5.3.3/tests/common/Puf3p-200.s meme-5.3.3/tests/common/Puf3p.s meme-5.3.3/tests/common/sample.meme meme-5.3.3/tests/common/simple.aln meme-5.3.3/tests/common/simple.meme meme-5.3.3/tests/common/test.aln meme-5.3.3/tests/common/test_tree.txt meme-5.3.3/tests/common/uprot.freq meme-5.3.3/tests/common/yeast.nc.1.freq meme-5.3.3/tests/common/yeast.nc.3.freq meme-5.3.3/tests/common/yeast.nc.6.freq meme-5.3.3/tests/common/motif.Puf3p/dreme.html meme-5.3.3/tests/common/motif.Puf3p/dreme.txt meme-5.3.3/tests/common/motif.Puf3p/dreme.xml meme-5.3.3/tests/common/motif.Puf3p/Makefile.am meme-5.3.3/tests/common/motif.Puf3p/Makefile.in meme-5.3.3/tests/common/motif.Puf3p/meme.html meme-5.3.3/tests/common/motif.Puf3p/meme.txt meme-5.3.3/tests/common/motif.Puf3p/meme.xml meme-5.3.3/tests/common/motif.crp0/dreme.html meme-5.3.3/tests/common/motif.crp0/dreme.txt meme-5.3.3/tests/common/motif.crp0/dreme.xml meme-5.3.3/tests/common/motif.crp0/Makefile.am meme-5.3.3/tests/common/motif.crp0/Makefile.in meme-5.3.3/tests/common/motif.crp0/meme.html meme-5.3.3/tests/common/motif.crp0/meme.txt meme-5.3.3/tests/common/motif.crp0/meme.xml meme-5.3.3/tests/clustalw2fasta/Makefile.am meme-5.3.3/tests/clustalw2fasta/Makefile.in meme-5.3.3/tests/clustalw2fasta/test.consensus.fasta meme-5.3.3/tests/clustalw2fasta/test.fasta meme-5.3.3/tests/clustalw2fasta/test.nogap.fasta meme-5.3.3/tests/centrimo/cd_seq_bg_centrimo.html meme-5.3.3/tests/centrimo/cd_seq_bg_centrimo.tsv meme-5.3.3/tests/centrimo/cd_seq_bg_site_counts.txt meme-5.3.3/tests/centrimo/dna_with_covalent_centrimo.html meme-5.3.3/tests/centrimo/dna_with_covalent_centrimo.tsv meme-5.3.3/tests/centrimo/dna_with_covalent_site_counts.txt meme-5.3.3/tests/centrimo/dreme-Klf1.xml meme-5.3.3/tests/centrimo/local_neg_centrimo.html meme-5.3.3/tests/centrimo/local_neg_centrimo.tsv meme-5.3.3/tests/centrimo/local_neg_site_counts.txt meme-5.3.3/tests/centrimo/Makefile.am meme-5.3.3/tests/centrimo/Makefile.in meme-5.3.3/tests/centrimo/motif_bg_centrimo.html meme-5.3.3/tests/centrimo/motif_bg_centrimo.tsv meme-5.3.3/tests/centrimo/motif_bg_site_counts.txt meme-5.3.3/tests/centrimo/neg_centrimo.html meme-5.3.3/tests/centrimo/neg_centrimo.tsv meme-5.3.3/tests/centrimo/neg_lo_centrimo.html meme-5.3.3/tests/centrimo/neg_lo_centrimo.tsv meme-5.3.3/tests/centrimo/neg_lo_site_counts.txt meme-5.3.3/tests/centrimo/neg_pv_centrimo.html meme-5.3.3/tests/centrimo/neg_pv_centrimo.tsv meme-5.3.3/tests/centrimo/neg_pv_site_counts.txt meme-5.3.3/tests/centrimo/neg_site_counts.txt meme-5.3.3/tests/centrimo/seq_bg_centrimo.html meme-5.3.3/tests/centrimo/seq_bg_centrimo.tsv meme-5.3.3/tests/centrimo/seq_bg_site_counts.txt meme-5.3.3/tests/centrimo/uni_bg_centrimo.html meme-5.3.3/tests/centrimo/uni_bg_centrimo.tsv meme-5.3.3/tests/centrimo/uni_bg_site_counts.txt meme-5.3.3/tests/ame/ame.3dmhg.totalhits.fix-partition.html meme-5.3.3/tests/ame/ame.3dmhg.totalhits.fix-partition.tsv meme-5.3.3/tests/ame/ame.3dmhg.totalhits.no_control.html meme-5.3.3/tests/ame/ame.3dmhg.totalhits.no_control.tsv meme-5.3.3/tests/ame/ame.4dmhg.totalhits.fix-partition.html meme-5.3.3/tests/ame/ame.4dmhg.totalhits.fix-partition.tsv meme-5.3.3/tests/ame/ame.4dmhg.totalhits.no_control.html meme-5.3.3/tests/ame/ame.4dmhg.totalhits.no_control.tsv meme-5.3.3/tests/ame/ame.dna_with_covalent.html meme-5.3.3/tests/ame/ame.dna_with_covalent.sequences.tsv meme-5.3.3/tests/ame/ame.dna_with_covalent.tsv meme-5.3.3/tests/ame/ame.fisher.avg.control.html meme-5.3.3/tests/ame/ame.fisher.avg.control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.avg.control.tsv meme-5.3.3/tests/ame/ame.fisher.avg.fix-partition.html meme-5.3.3/tests/ame/ame.fisher.avg.fix-partition.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.avg.fix-partition.tsv meme-5.3.3/tests/ame/ame.fisher.avg.no_control.html meme-5.3.3/tests/ame/ame.fisher.avg.no_control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.avg.no_control.tsv meme-5.3.3/tests/ame/ame.fisher.max.control.html meme-5.3.3/tests/ame/ame.fisher.max.control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.max.control.tsv meme-5.3.3/tests/ame/ame.fisher.max.fix-partition.html meme-5.3.3/tests/ame/ame.fisher.max.fix-partition.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.max.fix-partition.tsv meme-5.3.3/tests/ame/ame.fisher.max.no_control.html meme-5.3.3/tests/ame/ame.fisher.max.no_control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.max.no_control.tsv meme-5.3.3/tests/ame/ame.fisher.sum.control.html meme-5.3.3/tests/ame/ame.fisher.sum.control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.sum.control.tsv meme-5.3.3/tests/ame/ame.fisher.sum.fix-partition.html meme-5.3.3/tests/ame/ame.fisher.sum.fix-partition.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.sum.fix-partition.tsv meme-5.3.3/tests/ame/ame.fisher.sum.no_control.html meme-5.3.3/tests/ame/ame.fisher.sum.no_control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.sum.no_control.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.control.html meme-5.3.3/tests/ame/ame.fisher.totalhits.control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.control.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.fix-partition.html meme-5.3.3/tests/ame/ame.fisher.totalhits.fix-partition.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.fix-partition.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.no_control.html meme-5.3.3/tests/ame/ame.fisher.totalhits.no_control.sequences.tsv meme-5.3.3/tests/ame/ame.fisher.totalhits.no_control.tsv meme-5.3.3/tests/ame/ame.pearson.avg.no_control.html meme-5.3.3/tests/ame/ame.pearson.avg.no_control.tsv meme-5.3.3/tests/ame/ame.pearson.max.no_control.html meme-5.3.3/tests/ame/ame.pearson.max.no_control.tsv meme-5.3.3/tests/ame/ame.pearson.sum.no_control.html meme-5.3.3/tests/ame/ame.pearson.sum.no_control.tsv meme-5.3.3/tests/ame/ame.pearson.totalhits.no_control.html meme-5.3.3/tests/ame/ame.pearson.totalhits.no_control.tsv meme-5.3.3/tests/ame/ame.ranksum.avg.control.html meme-5.3.3/tests/ame/ame.ranksum.avg.control.tsv meme-5.3.3/tests/ame/ame.ranksum.avg.fix-partition.html meme-5.3.3/tests/ame/ame.ranksum.avg.fix-partition.tsv meme-5.3.3/tests/ame/ame.ranksum.avg.no_control.html meme-5.3.3/tests/ame/ame.ranksum.avg.no_control.tsv meme-5.3.3/tests/ame/ame.ranksum.max.control.html meme-5.3.3/tests/ame/ame.ranksum.max.control.tsv meme-5.3.3/tests/ame/ame.ranksum.max.fix-partition.html meme-5.3.3/tests/ame/ame.ranksum.max.fix-partition.tsv meme-5.3.3/tests/ame/ame.ranksum.max.no_control.html meme-5.3.3/tests/ame/ame.ranksum.max.no_control.tsv meme-5.3.3/tests/ame/ame.ranksum.sum.control.html meme-5.3.3/tests/ame/ame.ranksum.sum.control.tsv meme-5.3.3/tests/ame/ame.ranksum.sum.fix-partition.html meme-5.3.3/tests/ame/ame.ranksum.sum.fix-partition.tsv meme-5.3.3/tests/ame/ame.ranksum.sum.no_control.html meme-5.3.3/tests/ame/ame.ranksum.sum.no_control.tsv meme-5.3.3/tests/ame/ame.ranksum.totalhits.control.html meme-5.3.3/tests/ame/ame.ranksum.totalhits.control.tsv meme-5.3.3/tests/ame/ame.ranksum.totalhits.fix-partition.html meme-5.3.3/tests/ame/ame.ranksum.totalhits.fix-partition.tsv meme-5.3.3/tests/ame/ame.ranksum.totalhits.no_control.html meme-5.3.3/tests/ame/ame.ranksum.totalhits.no_control.tsv meme-5.3.3/tests/ame/ame.spearman.avg.fix-partition.html meme-5.3.3/tests/ame/ame.spearman.avg.fix-partition.tsv meme-5.3.3/tests/ame/ame.spearman.avg.no_control.html meme-5.3.3/tests/ame/ame.spearman.avg.no_control.tsv meme-5.3.3/tests/ame/ame.spearman.max.fix-partition.html meme-5.3.3/tests/ame/ame.spearman.max.fix-partition.tsv meme-5.3.3/tests/ame/ame.spearman.max.no_control.html meme-5.3.3/tests/ame/ame.spearman.max.no_control.tsv meme-5.3.3/tests/ame/ame.spearman.sum.fix-partition.html meme-5.3.3/tests/ame/ame.spearman.sum.fix-partition.tsv meme-5.3.3/tests/ame/ame.spearman.sum.no_control.html meme-5.3.3/tests/ame/ame.spearman.sum.no_control.tsv meme-5.3.3/tests/ame/ame.spearman.totalhits.fix-partition.html meme-5.3.3/tests/ame/ame.spearman.totalhits.fix-partition.tsv meme-5.3.3/tests/ame/ame.spearman.totalhits.no_control.html meme-5.3.3/tests/ame/ame.spearman.totalhits.no_control.tsv meme-5.3.3/tests/ame/Makefile.am meme-5.3.3/tests/ame/Makefile.in meme-5.3.3/src/aa.h meme-5.3.3/src/align.h meme-5.3.3/src/alignment.c meme-5.3.3/src/alignment.h meme-5.3.3/src/alph-in.c meme-5.3.3/src/alph-in.h meme-5.3.3/src/alphabet.c meme-5.3.3/src/alphabet.h meme-5.3.3/src/alphtype.c meme-5.3.3/src/ama.c meme-5.3.3/src/ame.c meme-5.3.3/src/ame.h meme-5.3.3/src/array-list.c meme-5.3.3/src/array-list.h meme-5.3.3/src/array.c meme-5.3.3/src/array.h meme-5.3.3/src/banner.c meme-5.3.3/src/banner.h meme-5.3.3/src/bates.c meme-5.3.3/src/bates.h meme-5.3.3/src/beadstring-xml.h meme-5.3.3/src/beadstring.c meme-5.3.3/src/beadstring.h meme-5.3.3/src/bed-io.c meme-5.3.3/src/bed-io.h meme-5.3.3/src/bed.c meme-5.3.3/src/bed.h meme-5.3.3/src/binary-search.c meme-5.3.3/src/binary-search.h meme-5.3.3/src/binomial.c meme-5.3.3/src/binomial.h meme-5.3.3/src/branching_search.c meme-5.3.3/src/buffer.c meme-5.3.3/src/buffer.h meme-5.3.3/src/build-hmm.c meme-5.3.3/src/build-hmm.h meme-5.3.3/src/calculate_p_y.c meme-5.3.3/src/calculate_p_y.h meme-5.3.3/src/centrimo.c meme-5.3.3/src/ceqlogo.c meme-5.3.3/src/ceqlogo.h meme-5.3.3/src/cisml-dtd.h meme-5.3.3/src/cisml-sax.c meme-5.3.3/src/cisml-sax.h meme-5.3.3/src/cisml.c meme-5.3.3/src/cisml.h meme-5.3.3/src/clustalw-io.c meme-5.3.3/src/clustalw-io.h meme-5.3.3/src/clustalw2fasta.c meme-5.3.3/src/clustalw2phylip.c meme-5.3.3/src/compute-prior-dist.c meme-5.3.3/src/compute-uniform-priors.c meme-5.3.3/src/create-priors.c meme-5.3.3/src/curves.h meme-5.3.3/src/data-block-reader.c meme-5.3.3/src/data-block-reader.h meme-5.3.3/src/data-block.c meme-5.3.3/src/data-block.h meme-5.3.3/src/data_types.h meme-5.3.3/src/diagram.c meme-5.3.3/src/diagram.h meme-5.3.3/src/discretize.c meme-5.3.3/src/display.c meme-5.3.3/src/display.h meme-5.3.3/src/dp.c meme-5.3.3/src/dp.h meme-5.3.3/src/dpalign.c meme-5.3.3/src/dpalign.h meme-5.3.3/src/draw-mhmm.c meme-5.3.3/src/dreme-sax.c meme-5.3.3/src/dreme-sax.h meme-5.3.3/src/dtc.c meme-5.3.3/src/dtc.h meme-5.3.3/src/em.c meme-5.3.3/src/em.h meme-5.3.3/src/empirical-qvalue.c meme-5.3.3/src/empirical-qvalue.h meme-5.3.3/src/enr.c meme-5.3.3/src/eps2png.c meme-5.3.3/src/eps2png.h meme-5.3.3/src/evomodel.c meme-5.3.3/src/evomodel.h meme-5.3.3/src/exec_parallel.c meme-5.3.3/src/fasta-from-bed.c meme-5.3.3/src/fasta-get-markov.c meme-5.3.3/src/fasta-io.c meme-5.3.3/src/fasta-io.h meme-5.3.3/src/fasta-shuffle-letters.c meme-5.3.3/src/filters/ meme-5.3.3/src/fimo-html-string.h meme-5.3.3/src/fimo-output.c meme-5.3.3/src/fimo-output.h meme-5.3.3/src/fimo.c meme-5.3.3/src/fimo.h meme-5.3.3/src/fisher_exact.c meme-5.3.3/src/fisher_exact.h meme-5.3.3/src/fitevd.c meme-5.3.3/src/fitevd.h meme-5.3.3/src/gendb.c meme-5.3.3/src/gendb.h meme-5.3.3/src/general.h meme-5.3.3/src/getsize.c meme-5.3.3/src/glam2_alignment.c meme-5.3.3/src/glam2_alignment.h meme-5.3.3/src/glam2_alphabet.c meme-5.3.3/src/glam2_alphabet.h meme-5.3.3/src/glam2_args.c meme-5.3.3/src/glam2_args.h meme-5.3.3/src/glam2_column_sample.c meme-5.3.3/src/glam2_column_sample.h meme-5.3.3/src/glam2_convolve.h meme-5.3.3/src/glam2_dirichlet.c meme-5.3.3/src/glam2_dirichlet.h meme-5.3.3/src/glam2_dna_prior.c meme-5.3.3/src/glam2_dna_prior.h meme-5.3.3/src/glam2_fasta.c meme-5.3.3/src/glam2_fasta.h meme-5.3.3/src/glam2_glam2.c meme-5.3.3/src/glam2_glam2.h meme-5.3.3/src/glam2_glam2_aln.c meme-5.3.3/src/glam2_glam2_aln.h meme-5.3.3/src/glam2_glam2format.c meme-5.3.3/src/glam2_glam2mask.c meme-5.3.3/src/glam2_heap.c meme-5.3.3/src/glam2_heap.h meme-5.3.3/src/glam2_init.c meme-5.3.3/src/glam2_init.h meme-5.3.3/src/glam2_motif.c meme-5.3.3/src/glam2_motif.h meme-5.3.3/src/glam2_output.c meme-5.3.3/src/glam2_output.h meme-5.3.3/src/glam2_recode3_20comp.c meme-5.3.3/src/glam2_recode3_20comp.h meme-5.3.3/src/glam2_scan.c meme-5.3.3/src/glam2_scan.h meme-5.3.3/src/glam2_scan_args.c meme-5.3.3/src/glam2_scan_args.h meme-5.3.3/src/glam2_scan_init.c meme-5.3.3/src/glam2_scan_init.h meme-5.3.3/src/glam2_scan_output.c meme-5.3.3/src/glam2_scan_output.h meme-5.3.3/src/glam2_site_sample.c meme-5.3.3/src/glam2_site_sample.h meme-5.3.3/src/glam2_util.c meme-5.3.3/src/glam2_util.h meme-5.3.3/src/glam2_version.h meme-5.3.3/src/gomo.c meme-5.3.3/src/gomo_highlight.c meme-5.3.3/src/gomo_highlight.h meme-5.3.3/src/gtf-io.c meme-5.3.3/src/gtf-io.h meme-5.3.3/src/gtf.c meme-5.3.3/src/gtf.h meme-5.3.3/src/hash_table.c meme-5.3.3/src/hash_table.h meme-5.3.3/src/hash_table_string.h meme-5.3.3/src/heap.c meme-5.3.3/src/heap.h meme-5.3.3/src/histogram.h meme-5.3.3/src/html-data.c meme-5.3.3/src/html-data.h meme-5.3.3/src/html-monolith.c meme-5.3.3/src/html-monolith.h meme-5.3.3/src/ic.h meme-5.3.3/src/import-html-template.c meme-5.3.3/src/index-fasta-file.c meme-5.3.3/src/init.c meme-5.3.3/src/inputmultiseq.c meme-5.3.3/src/inputmultiseq.h meme-5.3.3/src/io.c meme-5.3.3/src/io.h meme-5.3.3/src/json-checker.c meme-5.3.3/src/json-checker.h meme-5.3.3/src/json-reader.c meme-5.3.3/src/json-reader.h meme-5.3.3/src/json-writer.c meme-5.3.3/src/json-writer.h meme-5.3.3/src/justlike.c meme-5.3.3/src/karlin.c meme-5.3.3/src/karlin.h meme-5.3.3/src/libxml2/ meme-5.3.3/src/libxslt/ meme-5.3.3/src/likelihood.c meme-5.3.3/src/linked-list.c meme-5.3.3/src/linked-list.h meme-5.3.3/src/llr.c meme-5.3.3/src/llr.h meme-5.3.3/src/log-hmm.c meme-5.3.3/src/log-hmm.h meme-5.3.3/src/log_erfc.c meme-5.3.3/src/log_erfc.h meme-5.3.3/src/logodds.c meme-5.3.3/src/logodds.h meme-5.3.3/src/logs.c meme-5.3.3/src/logs.h meme-5.3.3/src/macros.h meme-5.3.3/src/Makefile.am meme-5.3.3/src/Makefile.in meme-5.3.3/src/mast-util.c meme-5.3.3/src/mast.c meme-5.3.3/src/mast.h meme-5.3.3/src/match.c meme-5.3.3/src/match.h meme-5.3.3/src/matrix.c meme-5.3.3/src/matrix.h meme-5.3.3/src/mcast-match.c meme-5.3.3/src/mcast-match.h meme-5.3.3/src/mcast.c meme-5.3.3/src/meme-dtd.h meme-5.3.3/src/meme-get-motif.c meme-5.3.3/src/meme-sax.c meme-5.3.3/src/meme-sax.h meme-5.3.3/src/meme.c meme-5.3.3/src/meme.h meme-5.3.3/src/meme2alph.c meme-5.3.3/src/meme2images.c meme-5.3.3/src/meme2meme.c meme-5.3.3/src/meme_util.c meme-5.3.3/src/merger.c meme-5.3.3/src/merger.h meme-5.3.3/src/message.c meme-5.3.3/src/message.h meme-5.3.3/src/meta-pssm-distr.h meme-5.3.3/src/metameme.c meme-5.3.3/src/metameme.h meme-5.3.3/src/mhmm-dtd.h meme-5.3.3/src/mhmm-io.c meme-5.3.3/src/mhmm-state.c meme-5.3.3/src/mhmm-state.h meme-5.3.3/src/mhmm.c meme-5.3.3/src/mhmm.h meme-5.3.3/src/mhmme.c meme-5.3.3/src/mhmms.c meme-5.3.3/src/mhmms.h meme-5.3.3/src/mhmmscan.c meme-5.3.3/src/mhmmscan.h meme-5.3.3/src/momo-algorithm.c meme-5.3.3/src/momo-algorithm.h meme-5.3.3/src/momo-input.c meme-5.3.3/src/momo-input.h meme-5.3.3/src/momo-modl.c meme-5.3.3/src/momo-modl.h meme-5.3.3/src/momo-motifx.c meme-5.3.3/src/momo-motifx.h meme-5.3.3/src/momo-output.c meme-5.3.3/src/momo-output.h meme-5.3.3/src/momo-simple.c meme-5.3.3/src/momo-simple.h meme-5.3.3/src/momo.c meme-5.3.3/src/momo.h meme-5.3.3/src/motif-db.c meme-5.3.3/src/motif-db.h meme-5.3.3/src/motif-in-common.c meme-5.3.3/src/motif-in-common.h meme-5.3.3/src/motif-in-dreme-xml.c meme-5.3.3/src/motif-in-dreme-xml.h meme-5.3.3/src/motif-in-flags.h meme-5.3.3/src/motif-in-meme-html.c meme-5.3.3/src/motif-in-meme-html.h meme-5.3.3/src/motif-in-meme-json.c meme-5.3.3/src/motif-in-meme-json.h meme-5.3.3/src/motif-in-meme-text.c meme-5.3.3/src/motif-in-meme-text.h meme-5.3.3/src/motif-in-meme-xml.c meme-5.3.3/src/motif-in-meme-xml.h meme-5.3.3/src/motif-in-streme-xml.c meme-5.3.3/src/motif-in-streme-xml.h meme-5.3.3/src/motif-in.c meme-5.3.3/src/motif-in.h meme-5.3.3/src/motif-shuffle-columns.c meme-5.3.3/src/motif-spec.h meme-5.3.3/src/motif.c meme-5.3.3/src/motif.h meme-5.3.3/src/motif_regexp.c meme-5.3.3/src/motif_regexp.h meme-5.3.3/src/motiph-scoring.c meme-5.3.3/src/motiph-scoring.h meme-5.3.3/src/motiph.c meme-5.3.3/src/mp.c meme-5.3.3/src/mp.h meme-5.3.3/src/mtwist.c meme-5.3.3/src/mtwist.h meme-5.3.3/src/mtype.h meme-5.3.3/src/nrutil.h meme-5.3.3/src/object-list.c meme-5.3.3/src/object-list.h meme-5.3.3/src/oops.c meme-5.3.3/src/order.c meme-5.3.3/src/order.h meme-5.3.3/src/parallel/ meme-5.3.3/src/params.h meme-5.3.3/src/parser-message.c meme-5.3.3/src/parser-message.h meme-5.3.3/src/partition.c meme-5.3.3/src/partition.h meme-5.3.3/src/pmp_bf.c meme-5.3.3/src/prealigned-io.c meme-5.3.3/src/prealigned-io.h meme-5.3.3/src/prior-dist.c meme-5.3.3/src/prior-dist.h meme-5.3.3/src/prior-reader-from-psp.c meme-5.3.3/src/prior-reader-from-psp.h meme-5.3.3/src/prior-reader-from-wig.c meme-5.3.3/src/prior-reader-from-wig.h meme-5.3.3/src/prior.c meme-5.3.3/src/prior.h meme-5.3.3/src/psp.c meme-5.3.3/src/psp.h meme-5.3.3/src/pssm-distr.c meme-5.3.3/src/pssm-distr.h meme-5.3.3/src/pssm.c meme-5.3.3/src/pssm.h meme-5.3.3/src/qvalue.c meme-5.3.3/src/qvalue.h meme-5.3.3/src/ramen.c meme-5.3.3/src/ramen_scan.c meme-5.3.3/src/ramen_scan.h meme-5.3.3/src/random-variate.c meme-5.3.3/src/random-variate.h meme-5.3.3/src/ranksum_test.c meme-5.3.3/src/ranksum_test.h meme-5.3.3/src/rdb-matrix.c meme-5.3.3/src/rdb-matrix.h meme-5.3.3/src/read-mhmm.c meme-5.3.3/src/read-mhmm.h meme-5.3.3/src/read_csv.c meme-5.3.3/src/read_csv.h meme-5.3.3/src/read_seq_file.c meme-5.3.3/src/read_seq_file.h meme-5.3.3/src/read_sequence.c meme-5.3.3/src/read_sequence.h meme-5.3.3/src/reconcile-tree-alignment.c meme-5.3.3/src/red-black-tree.c meme-5.3.3/src/red-black-tree.h meme-5.3.3/src/reduce-alignment.c meme-5.3.3/src/regex-utils.c meme-5.3.3/src/regex-utils.h meme-5.3.3/src/regress.c meme-5.3.3/src/regress.h meme-5.3.3/src/remove-alignment-gaps.c meme-5.3.3/src/reservoir.c meme-5.3.3/src/reservoir.h meme-5.3.3/src/sax-parser-utils.c meme-5.3.3/src/sax-parser-utils.h meme-5.3.3/src/scanned-sequence.c meme-5.3.3/src/scanned-sequence.h meme-5.3.3/src/scored-sites.c meme-5.3.3/src/scored-sites.h meme-5.3.3/src/seed.c meme-5.3.3/src/seed.h meme-5.3.3/src/seed_diffs.c meme-5.3.3/src/seed_diffs.h meme-5.3.3/src/seq-reader-from-fasta.c meme-5.3.3/src/seq-reader-from-fasta.h meme-5.3.3/src/seq.c meme-5.3.3/src/seq.h meme-5.3.3/src/seq2theta.c meme-5.3.3/src/shadow.c meme-5.3.3/src/shuffle_int.h meme-5.3.3/src/simple-getopt.c meme-5.3.3/src/simple-getopt.h meme-5.3.3/src/sp_matrix.c meme-5.3.3/src/sp_matrix.h meme-5.3.3/src/spamo-cisml.h meme-5.3.3/src/spamo-matches.c meme-5.3.3/src/spamo-matches.h meme-5.3.3/src/spamo-output.c meme-5.3.3/src/spamo-output.h meme-5.3.3/src/spamo-scan.c meme-5.3.3/src/spamo-scan.h meme-5.3.3/src/spamo.c meme-5.3.3/src/spearman-rank-correlation.c meme-5.3.3/src/spearman-rank-correlation.h meme-5.3.3/src/split.h meme-5.3.3/src/st_access.c meme-5.3.3/src/st_arraydef.h meme-5.3.3/src/st_construct.c meme-5.3.3/src/st_construct_gen.h meme-5.3.3/src/st_debugdef.h meme-5.3.3/src/st_dfs.c meme-5.3.3/src/st_dfs_gen.h meme-5.3.3/src/st_errordef.h meme-5.3.3/src/st_intbits.h meme-5.3.3/src/st_mapfile.c meme-5.3.3/src/st_megabytes.h meme-5.3.3/src/st_multidef.h meme-5.3.3/src/st_seterror.c meme-5.3.3/src/st_space.c meme-5.3.3/src/st_spacedef.h meme-5.3.3/src/st_streeacc.h meme-5.3.3/src/st_streehuge.h meme-5.3.3/src/st_streemac.h meme-5.3.3/src/st_streetyp.h meme-5.3.3/src/st_symboldef.h meme-5.3.3/src/st_types.h meme-5.3.3/src/star.h meme-5.3.3/src/starts.c meme-5.3.3/src/streme-sax.c meme-5.3.3/src/streme-sax.h meme-5.3.3/src/streme-utils.c meme-5.3.3/src/streme-utils.h meme-5.3.3/src/streme.c meme-5.3.3/src/string-builder.c meme-5.3.3/src/string-builder.h meme-5.3.3/src/string-list.c meme-5.3.3/src/string-list.h meme-5.3.3/src/string-match.c meme-5.3.3/src/string-match.h meme-5.3.3/src/strlcpy.h meme-5.3.3/src/subseq7.c meme-5.3.3/src/subst-matrix.c meme-5.3.3/src/subst-matrix.h meme-5.3.3/src/substmatrix-table.c meme-5.3.3/src/substmatrix-table.h meme-5.3.3/src/tcm.c meme-5.3.3/src/tgene.c meme-5.3.3/src/tomtom.c meme-5.3.3/src/transfac.c meme-5.3.3/src/transfac.h meme-5.3.3/src/tree.c meme-5.3.3/src/tree.h meme-5.3.3/src/user.h meme-5.3.3/src/ushuffle.c meme-5.3.3/src/ushuffle.h meme-5.3.3/src/utest.h meme-5.3.3/src/utils.c meme-5.3.3/src/utils.h meme-5.3.3/src/verbosity.c meme-5.3.3/src/wiggle-reader.c meme-5.3.3/src/wiggle-reader.h meme-5.3.3/src/write-mhmm.c meme-5.3.3/src/write-mhmm.h meme-5.3.3/src/xlate-in.c meme-5.3.3/src/xlate-in.h meme-5.3.3/src/xml-out.c meme-5.3.3/src/xml-out.h meme-5.3.3/src/xml-util.c meme-5.3.3/src/xml-util.h meme-5.3.3/src/zscore.h meme-5.3.3/src/parallel/Makefile.am meme-5.3.3/src/parallel/Makefile.in meme-5.3.3/src/libxslt/attributes.c meme-5.3.3/src/libxslt/attributes.h meme-5.3.3/src/libxslt/attrvt.c meme-5.3.3/src/libxslt/Copyright meme-5.3.3/src/libxslt/documents.c meme-5.3.3/src/libxslt/documents.h meme-5.3.3/src/libxslt/extensions.c meme-5.3.3/src/libxslt/extensions.h meme-5.3.3/src/libxslt/extra.c meme-5.3.3/src/libxslt/extra.h meme-5.3.3/src/libxslt/functions.c meme-5.3.3/src/libxslt/functions.h meme-5.3.3/src/libxslt/imports.c meme-5.3.3/src/libxslt/imports.h meme-5.3.3/src/libxslt/keys.c meme-5.3.3/src/libxslt/keys.h meme-5.3.3/src/libxslt/libxslt.h meme-5.3.3/src/libxslt/Makefile.am meme-5.3.3/src/libxslt/Makefile.in meme-5.3.3/src/libxslt/namespaces.c meme-5.3.3/src/libxslt/namespaces.h meme-5.3.3/src/libxslt/numbers.c meme-5.3.3/src/libxslt/numbersInternals.h meme-5.3.3/src/libxslt/pattern.c meme-5.3.3/src/libxslt/pattern.h meme-5.3.3/src/libxslt/preproc.c meme-5.3.3/src/libxslt/preproc.h meme-5.3.3/src/libxslt/security.c meme-5.3.3/src/libxslt/security.h meme-5.3.3/src/libxslt/templates.c meme-5.3.3/src/libxslt/templates.h meme-5.3.3/src/libxslt/transform.c meme-5.3.3/src/libxslt/transform.h meme-5.3.3/src/libxslt/variables.c meme-5.3.3/src/libxslt/variables.h meme-5.3.3/src/libxslt/win32config.h meme-5.3.3/src/libxslt/xslt.c meme-5.3.3/src/libxslt/xslt.h meme-5.3.3/src/libxslt/xsltconfig.h meme-5.3.3/src/libxslt/xsltexports.h meme-5.3.3/src/libxslt/xsltInternals.h meme-5.3.3/src/libxslt/xsltlocale.c meme-5.3.3/src/libxslt/xsltlocale.h meme-5.3.3/src/libxslt/xsltutils.c meme-5.3.3/src/libxslt/xsltutils.h meme-5.3.3/src/libxslt/xsltwin32config.h meme-5.3.3/src/libxslt/xsltwin32config.h.in meme-5.3.3/src/libxml2/c14n.c meme-5.3.3/src/libxml2/catalog.c meme-5.3.3/src/libxml2/chvalid.c meme-5.3.3/src/libxml2/Copyright meme-5.3.3/src/libxml2/debugXML.c meme-5.3.3/src/libxml2/dict.c meme-5.3.3/src/libxml2/DOCBparser.c meme-5.3.3/src/libxml2/elfgcchack.h meme-5.3.3/src/libxml2/encoding.c meme-5.3.3/src/libxml2/entities.c meme-5.3.3/src/libxml2/error.c meme-5.3.3/src/libxml2/globals.c meme-5.3.3/src/libxml2/hash.c meme-5.3.3/src/libxml2/HTMLparser.c meme-5.3.3/src/libxml2/HTMLtree.c meme-5.3.3/src/libxml2/include/ meme-5.3.3/src/libxml2/legacy.c meme-5.3.3/src/libxml2/libxml.h meme-5.3.3/src/libxml2/list.c meme-5.3.3/src/libxml2/ltmain.sh meme-5.3.3/src/libxml2/Makefile.am meme-5.3.3/src/libxml2/Makefile.in meme-5.3.3/src/libxml2/nanoftp.c meme-5.3.3/src/libxml2/nanohttp.c meme-5.3.3/src/libxml2/parser.c meme-5.3.3/src/libxml2/parserInternals.c meme-5.3.3/src/libxml2/pattern.c meme-5.3.3/src/libxml2/relaxng.c meme-5.3.3/src/libxml2/SAX.c meme-5.3.3/src/libxml2/SAX2.c meme-5.3.3/src/libxml2/schematron.c meme-5.3.3/src/libxml2/threads.c meme-5.3.3/src/libxml2/tree.c meme-5.3.3/src/libxml2/trio.c meme-5.3.3/src/libxml2/trio.h meme-5.3.3/src/libxml2/triodef.h meme-5.3.3/src/libxml2/trionan.c meme-5.3.3/src/libxml2/trionan.h meme-5.3.3/src/libxml2/triop.h meme-5.3.3/src/libxml2/triostr.c meme-5.3.3/src/libxml2/triostr.h meme-5.3.3/src/libxml2/uri.c meme-5.3.3/src/libxml2/valid.c meme-5.3.3/src/libxml2/xinclude.c meme-5.3.3/src/libxml2/xlink.c meme-5.3.3/src/libxml2/xmlIO.c meme-5.3.3/src/libxml2/xmlmemory.c meme-5.3.3/src/libxml2/xmlmodule.c meme-5.3.3/src/libxml2/xmlreader.c meme-5.3.3/src/libxml2/xmlregexp.c meme-5.3.3/src/libxml2/xmlsave.c meme-5.3.3/src/libxml2/xmlschemas.c meme-5.3.3/src/libxml2/xmlschemastypes.c meme-5.3.3/src/libxml2/xmlstring.c meme-5.3.3/src/libxml2/xmlunicode.c meme-5.3.3/src/libxml2/xmlwriter.c meme-5.3.3/src/libxml2/xpath.c meme-5.3.3/src/libxml2/xpointer.c meme-5.3.3/src/libxml2/include/libxml/ meme-5.3.3/src/libxml2/include/Makefile.am meme-5.3.3/src/libxml2/include/Makefile.in meme-5.3.3/src/libxml2/include/win32config.h meme-5.3.3/src/libxml2/include/wsockcompat.h meme-5.3.3/src/libxml2/include/libxml/c14n.h meme-5.3.3/src/libxml2/include/libxml/catalog.h meme-5.3.3/src/libxml2/include/libxml/chvalid.h meme-5.3.3/src/libxml2/include/libxml/debugXML.h meme-5.3.3/src/libxml2/include/libxml/dict.h meme-5.3.3/src/libxml2/include/libxml/DOCBparser.h meme-5.3.3/src/libxml2/include/libxml/encoding.h meme-5.3.3/src/libxml2/include/libxml/entities.h meme-5.3.3/src/libxml2/include/libxml/globals.h meme-5.3.3/src/libxml2/include/libxml/hash.h meme-5.3.3/src/libxml2/include/libxml/HTMLparser.h meme-5.3.3/src/libxml2/include/libxml/HTMLtree.h meme-5.3.3/src/libxml2/include/libxml/list.h meme-5.3.3/src/libxml2/include/libxml/Makefile.am meme-5.3.3/src/libxml2/include/libxml/Makefile.in meme-5.3.3/src/libxml2/include/libxml/nanoftp.h meme-5.3.3/src/libxml2/include/libxml/nanohttp.h meme-5.3.3/src/libxml2/include/libxml/parser.h meme-5.3.3/src/libxml2/include/libxml/parserInternals.h meme-5.3.3/src/libxml2/include/libxml/pattern.h meme-5.3.3/src/libxml2/include/libxml/relaxng.h meme-5.3.3/src/libxml2/include/libxml/SAX.h meme-5.3.3/src/libxml2/include/libxml/SAX2.h meme-5.3.3/src/libxml2/include/libxml/schemasInternals.h meme-5.3.3/src/libxml2/include/libxml/schematron.h meme-5.3.3/src/libxml2/include/libxml/threads.h meme-5.3.3/src/libxml2/include/libxml/tree.h meme-5.3.3/src/libxml2/include/libxml/uri.h meme-5.3.3/src/libxml2/include/libxml/valid.h meme-5.3.3/src/libxml2/include/libxml/xinclude.h meme-5.3.3/src/libxml2/include/libxml/xlink.h meme-5.3.3/src/libxml2/include/libxml/xmlautomata.h meme-5.3.3/src/libxml2/include/libxml/xmlerror.h meme-5.3.3/src/libxml2/include/libxml/xmlexports.h meme-5.3.3/src/libxml2/include/libxml/xmlIO.h meme-5.3.3/src/libxml2/include/libxml/xmlmemory.h meme-5.3.3/src/libxml2/include/libxml/xmlmodule.h meme-5.3.3/src/libxml2/include/libxml/xmlreader.h meme-5.3.3/src/libxml2/include/libxml/xmlregexp.h meme-5.3.3/src/libxml2/include/libxml/xmlsave.h meme-5.3.3/src/libxml2/include/libxml/xmlschemas.h meme-5.3.3/src/libxml2/include/libxml/xmlschemastypes.h meme-5.3.3/src/libxml2/include/libxml/xmlstring.h meme-5.3.3/src/libxml2/include/libxml/xmlunicode.h meme-5.3.3/src/libxml2/include/libxml/xmlversion.h meme-5.3.3/src/libxml2/include/libxml/xmlwriter.h meme-5.3.3/src/libxml2/include/libxml/xpath.h meme-5.3.3/src/libxml2/include/libxml/xpathInternals.h meme-5.3.3/src/libxml2/include/libxml/xpointer.h meme-5.3.3/src/filters/dust/ meme-5.3.3/src/filters/Makefile.am meme-5.3.3/src/filters/Makefile.in meme-5.3.3/src/filters/purge/ meme-5.3.3/src/filters/purge/afnio.c meme-5.3.3/src/filters/purge/afnio.h meme-5.3.3/src/filters/purge/alphabet.c meme-5.3.3/src/filters/purge/alphabet.h meme-5.3.3/src/filters/purge/block.c meme-5.3.3/src/filters/purge/block.h meme-5.3.3/src/filters/purge/dheap.c meme-5.3.3/src/filters/purge/dheap.h meme-5.3.3/src/filters/purge/gblast.c meme-5.3.3/src/filters/purge/gblast.h meme-5.3.3/src/filters/purge/karlin.c meme-5.3.3/src/filters/purge/karlin.h meme-5.3.3/src/filters/purge/Makefile.am meme-5.3.3/src/filters/purge/Makefile.in meme-5.3.3/src/filters/purge/mheap.c meme-5.3.3/src/filters/purge/mheap.h meme-5.3.3/src/filters/purge/mlist.c meme-5.3.3/src/filters/purge/mlist.h meme-5.3.3/src/filters/purge/pairaln.c meme-5.3.3/src/filters/purge/pairaln.h meme-5.3.3/src/filters/purge/pmain.c meme-5.3.3/src/filters/purge/purge.c meme-5.3.3/src/filters/purge/purge.h meme-5.3.3/src/filters/purge/random.c meme-5.3.3/src/filters/purge/random.h meme-5.3.3/src/filters/purge/README meme-5.3.3/src/filters/purge/residues.h meme-5.3.3/src/filters/purge/seqset.c meme-5.3.3/src/filters/purge/seqset.h meme-5.3.3/src/filters/purge/sequence.c meme-5.3.3/src/filters/purge/sequence.h meme-5.3.3/src/filters/purge/stdinc.h meme-5.3.3/src/filters/dust/dust.c meme-5.3.3/src/filters/dust/getfa.c meme-5.3.3/src/filters/dust/getfa.h meme-5.3.3/src/filters/dust/Makefile.am meme-5.3.3/src/filters/dust/Makefile.in meme-5.3.3/src/filters/dust/README meme-5.3.3/src/filters/dust/tust.c meme-5.3.3/scripts/Alphabet.pm meme-5.3.3/scripts/alphabet.py meme-5.3.3/scripts/alphabet_py3.py meme-5.3.3/scripts/ama-qvalues.pl.in meme-5.3.3/scripts/ame_webservice.pl.in meme-5.3.3/scripts/beeml2meme.pl.in meme-5.3.3/scripts/centrimo_webservice.pl.in meme-5.3.3/scripts/CheckingSAX.pm meme-5.3.3/scripts/chen2meme.pl.in meme-5.3.3/scripts/CombDynProg.pm meme-5.3.3/scripts/combine-meme-logs meme-5.3.3/scripts/create-png-plots meme-5.3.3/scripts/create-png-plots.csh.in meme-5.3.3/scripts/cron-usage.sh.in meme-5.3.3/scripts/dependencies.pl meme-5.3.3/scripts/DiffJSON.pm meme-5.3.3/scripts/DiffXML.pm meme-5.3.3/scripts/dreme.py.in meme-5.3.3/scripts/dreme_py3.py.in meme-5.3.3/scripts/dreme_webservice.pl.in meme-5.3.3/scripts/dreme_xml_to_html.pl.in meme-5.3.3/scripts/dreme_xml_to_txt.pl.in meme-5.3.3/scripts/DremeSAX.pm meme-5.3.3/scripts/elm2meme.pl.in meme-5.3.3/scripts/ExecUtils.pm meme-5.3.3/scripts/fasta-center.pl.in meme-5.3.3/scripts/fasta-dinucleotide-shuffle-py3.in meme-5.3.3/scripts/fasta-dinucleotide-shuffle.py.in meme-5.3.3/scripts/fasta-enriched-center.pl.in meme-5.3.3/scripts/fasta-fetch.pl.in meme-5.3.3/scripts/fasta-grep meme-5.3.3/scripts/fasta-hamming-enrich-py3.in meme-5.3.3/scripts/fasta-hamming-enrich.py.in meme-5.3.3/scripts/fasta-make-index.pl.in meme-5.3.3/scripts/fasta-most.pl.in meme-5.3.3/scripts/fasta-re-match.pl.in meme-5.3.3/scripts/fasta-subsample.pl.in meme-5.3.3/scripts/fasta-unique-names.pl.in meme-5.3.3/scripts/fimo_webservice.pl.in meme-5.3.3/scripts/glam2_webservice.pl.in meme-5.3.3/scripts/glam2html-py3.in meme-5.3.3/scripts/glam2html.py.in meme-5.3.3/scripts/glam2psfm-py3.in meme-5.3.3/scripts/glam2psfm.py.in meme-5.3.3/scripts/glam2scan2html-py3.in meme-5.3.3/scripts/glam2scan2html.py.in meme-5.3.3/scripts/glam2scan_webservice.pl.in meme-5.3.3/scripts/Globals.pm.in meme-5.3.3/scripts/gomo_webservice.pl.in meme-5.3.3/scripts/hart2meme-bkg.pl.in meme-5.3.3/scripts/hartemink2psp.pl.in meme-5.3.3/scripts/HtmlMonolithWr.pm meme-5.3.3/scripts/hypergeometric.py meme-5.3.3/scripts/hypergeometric_py3.py meme-5.3.3/scripts/HypergeometricDynProg.pm meme-5.3.3/scripts/iupac2meme.pl.in meme-5.3.3/scripts/jaspar2meme.pl.in meme-5.3.3/scripts/JsonRdr.pm meme-5.3.3/scripts/JsonWr.pm meme-5.3.3/scripts/lrun.pl.in meme-5.3.3/scripts/make-usage-reports meme-5.3.3/scripts/make-usage-reports.csh.in meme-5.3.3/scripts/Makefile.am meme-5.3.3/scripts/Makefile.in meme-5.3.3/scripts/mast_webservice.pl.in meme-5.3.3/scripts/mast_xml_to_html.pl.in meme-5.3.3/scripts/mast_xml_to_txt.pl.in meme-5.3.3/scripts/MastSAX.pm meme-5.3.3/scripts/matrix2meme.pl.in meme-5.3.3/scripts/mcast.pl.in meme-5.3.3/scripts/mcast_webservice.pl.in meme-5.3.3/scripts/meme-chip.pl.in meme-5.3.3/scripts/meme-chip_html_to_tsv.pl.in meme-5.3.3/scripts/meme-chip_webservice.pl.in meme-5.3.3/scripts/meme-rename.pl.in meme-5.3.3/scripts/meme_webservice.pl.in meme-5.3.3/scripts/meme_xml_to_html.pl.in meme-5.3.3/scripts/MemeSAX.pm meme-5.3.3/scripts/MemeWebUtils.pm.in meme-5.3.3/scripts/mhmm2html.pl.in meme-5.3.3/scripts/momo_webservice.pl.in meme-5.3.3/scripts/MotifInDremeXML.pm meme-5.3.3/scripts/MotifInMemeXML.pm meme-5.3.3/scripts/MotifInStremeXML.pm meme-5.3.3/scripts/MotifUtils.pm meme-5.3.3/scripts/nmica2meme.pl.in meme-5.3.3/scripts/obo2dag.jar meme-5.3.3/scripts/plot-usage meme-5.3.3/scripts/plot-usage.csh.in meme-5.3.3/scripts/plotgen meme-5.3.3/scripts/priority2meme.pl.in meme-5.3.3/scripts/PriorUtils.pm meme-5.3.3/scripts/psp-gen.pl.in meme-5.3.3/scripts/ReadFastaFile.pm meme-5.3.3/scripts/README meme-5.3.3/scripts/rna2meme.pl.in meme-5.3.3/scripts/rsat-retrieve-seq.pl.in meme-5.3.3/scripts/rsat-supported-organisms.pl.in meme-5.3.3/scripts/scpd2meme.pl.in meme-5.3.3/scripts/sd meme-5.3.3/scripts/sequence.py meme-5.3.3/scripts/sequence_py3.py meme-5.3.3/scripts/sites2meme.pl.in meme-5.3.3/scripts/spamo_webservice.pl.in meme-5.3.3/scripts/StatusPage.pm.in meme-5.3.3/scripts/streme_webservice.pl.in meme-5.3.3/scripts/streme_xml_to_html.pl.in meme-5.3.3/scripts/StremeSAX.pm meme-5.3.3/scripts/taipale2meme.pl.in meme-5.3.3/scripts/tamo2meme.pl.in meme-5.3.3/scripts/texit.pl.in meme-5.3.3/scripts/tgene_webservice.pl.in meme-5.3.3/scripts/tomtom_webservice.pl.in meme-5.3.3/scripts/tomtom_xml_to_html.pl.in meme-5.3.3/scripts/TomtomSAX.pm meme-5.3.3/scripts/transfac2meme.pl.in meme-5.3.3/scripts/uniprobe2meme.pl.in meme-5.3.3/scripts/update-plot-usage.pl.in meme-5.3.3/scripts/update-sequence-db.sh.in meme-5.3.3/m4/libtool.m4 meme-5.3.3/m4/ltoptions.m4 meme-5.3.3/m4/ltsugar.m4 meme-5.3.3/m4/ltversion.m4 meme-5.3.3/m4/lt~obsolete.m4 meme-5.3.3/etc/alphabet_utilities.js meme-5.3.3/etc/AME_config.xml.in meme-5.3.3/etc/ame_icon.png meme-5.3.3/etc/ame_template.css meme-5.3.3/etc/ame_template.html.in meme-5.3.3/etc/ame_template.js meme-5.3.3/etc/beadstring.xsl.in meme-5.3.3/etc/block_diagram.css meme-5.3.3/etc/block_diagram.js meme-5.3.3/etc/CENTRIMO_config.xml.in meme-5.3.3/etc/centrimo_graph.js meme-5.3.3/etc/centrimo_icon.png meme-5.3.3/etc/centrimo_template.css meme-5.3.3/etc/centrimo_template.html.in meme-5.3.3/etc/centrimo_template.js meme-5.3.3/etc/cisml-to-gff.xsl meme-5.3.3/etc/cisml-to-gff3.xsl meme-5.3.3/etc/cisml-to-html.xsl meme-5.3.3/etc/cisml-to-text.xsl meme-5.3.3/etc/cisml.css meme-5.3.3/etc/constants.js.in meme-5.3.3/etc/constants.xsl.in meme-5.3.3/etc/db_general.csv meme-5.3.3/etc/db_other_genomes.csv meme-5.3.3/etc/delay_draw.js meme-5.3.3/etc/DREME_config.xml.in meme-5.3.3/etc/dreme_icon.png meme-5.3.3/etc/dreme_template.css meme-5.3.3/etc/dreme_template.html.in meme-5.3.3/etc/dreme_template.js meme-5.3.3/etc/eps_context.js meme-5.3.3/etc/FIMO_config.xml.in meme-5.3.3/etc/generate_js_wrapped_template.pl meme-5.3.3/etc/generate_xsl_icons.pl meme-5.3.3/etc/GLAM2_config.xml.in meme-5.3.3/etc/GLAM2SCAN_config.xml.in meme-5.3.3/etc/gomo-to-html.xsl.in meme-5.3.3/etc/GOMO_config.xml.in meme-5.3.3/etc/hmm-text.xsl meme-5.3.3/etc/job_status.tmpl meme-5.3.3/etc/logging.conf.in meme-5.3.3/etc/Makefile.am meme-5.3.3/etc/Makefile.in meme-5.3.3/etc/MAST_config.xml.in meme-5.3.3/etc/mast_icon.png meme-5.3.3/etc/mast_template.css meme-5.3.3/etc/mast_template.html.in meme-5.3.3/etc/mast_template.js meme-5.3.3/etc/MCAST_config.xml.in meme-5.3.3/etc/mcast_icon.png meme-5.3.3/etc/mcast_template.css meme-5.3.3/etc/mcast_template.html.in meme-5.3.3/etc/mcast_template.js meme-5.3.3/etc/meme-chip_template.css meme-5.3.3/etc/meme-chip_template.html.in meme-5.3.3/etc/meme-chip_template.js meme-5.3.3/etc/meme.css meme-5.3.3/etc/MEME_config.xml.in meme-5.3.3/etc/meme_icon.png meme-5.3.3/etc/meme_template.css meme-5.3.3/etc/meme_template.html.in meme-5.3.3/etc/meme_template.js meme-5.3.3/etc/MEMECHIP_config.xml.in meme-5.3.3/etc/memechip_icon.png meme-5.3.3/etc/MOMO_config.xml.in meme-5.3.3/etc/momo_icon.png meme-5.3.3/etc/momo_template.css meme-5.3.3/etc/momo_template.html.in meme-5.3.3/etc/momo_template.js meme-5.3.3/etc/motif_logo.js meme-5.3.3/etc/new_icon.png meme-5.3.3/etc/prior1.plib meme-5.3.3/etc/prior30.plib meme-5.3.3/etc/set_maxtime.pl meme-5.3.3/etc/simple-shared-doc.js meme-5.3.3/etc/SPAMO_config.xml.in meme-5.3.3/etc/spamo_graph.js meme-5.3.3/etc/spamo_icon.png meme-5.3.3/etc/spamo_template.css meme-5.3.3/etc/spamo_template.html.in meme-5.3.3/etc/spamo_template.js meme-5.3.3/etc/STREME_config.xml.in meme-5.3.3/etc/streme_icon.png meme-5.3.3/etc/streme_template.css meme-5.3.3/etc/streme_template.html.in meme-5.3.3/etc/streme_template.js meme-5.3.3/etc/template.eps meme-5.3.3/etc/TGENE_config.xml.in meme-5.3.3/etc/tgene_doc.js meme-5.3.3/etc/tgene_icon.png meme-5.3.3/etc/tgene_template.css meme-5.3.3/etc/tgene_template.html.in meme-5.3.3/etc/tgene_template.js meme-5.3.3/etc/TOMTOM_config.xml.in meme-5.3.3/etc/tomtom_icon.png meme-5.3.3/etc/TOMTOM_SHORT_config.xml.in meme-5.3.3/etc/tomtom_template.css meme-5.3.3/etc/tomtom_template.html.in meme-5.3.3/etc/tomtom_template.js meme-5.3.3/etc/utilities.js meme-5.3.3/etc/xsl-wrapper.in meme-5.3.3/doc/alphabet-format.html meme-5.3.3/doc/alphabets.html meme-5.3.3/doc/alphtype.html meme-5.3.3/doc/ama-qvalues.html meme-5.3.3/doc/ama.html meme-5.3.3/doc/ame-output-format.html meme-5.3.3/doc/ame-tutorial.html meme-5.3.3/doc/ame.html meme-5.3.3/doc/authors.html meme-5.3.3/doc/beadstring.html meme-5.3.3/doc/bed-format.html meme-5.3.3/doc/beeml2meme.html meme-5.3.3/doc/bfile-format.html meme-5.3.3/doc/centrimo-output-format.html meme-5.3.3/doc/centrimo-tutorial.html meme-5.3.3/doc/centrimo.html meme-5.3.3/doc/ceqlogo.html meme-5.3.3/doc/chen2meme.html meme-5.3.3/doc/cite.html meme-5.3.3/doc/clustalw-format.html meme-5.3.3/doc/clustalw2fasta.html meme-5.3.3/doc/clustalw2phylip.html meme-5.3.3/doc/compute-prior-dist.html meme-5.3.3/doc/compute-uniform-priors.html meme-5.3.3/doc/copyright.html meme-5.3.3/doc/copyright.html.in meme-5.3.3/doc/create-priors.html meme-5.3.3/doc/css/ meme-5.3.3/doc/dmix-format.html meme-5.3.3/doc/download-index.html.in meme-5.3.3/doc/download.html.in meme-5.3.3/doc/draw-mhmm.html meme-5.3.3/doc/dreme-tutorial.html meme-5.3.3/doc/dreme.html meme-5.3.3/doc/dust.html meme-5.3.3/doc/elm2meme.html meme-5.3.3/doc/enr.html meme-5.3.3/doc/examples/ meme-5.3.3/doc/fasta-center.html meme-5.3.3/doc/fasta-dinucleotide-shuffle.html meme-5.3.3/doc/fasta-fetch.html meme-5.3.3/doc/fasta-format.html meme-5.3.3/doc/fasta-get-markov.html meme-5.3.3/doc/fasta-grep.html meme-5.3.3/doc/fasta-hamming-enrich.html meme-5.3.3/doc/fasta-io.html meme-5.3.3/doc/fasta-make-index.html meme-5.3.3/doc/fasta-most.html meme-5.3.3/doc/fasta-shuffle-letters.html meme-5.3.3/doc/fasta-subsample.html meme-5.3.3/doc/fasta-unique-names.html meme-5.3.3/doc/fimo-output-format.html meme-5.3.3/doc/fimo-tutorial.html meme-5.3.3/doc/fimo.html meme-5.3.3/doc/fisher_exact.html meme-5.3.3/doc/fitevd.html meme-5.3.3/doc/gendb.html meme-5.3.3/doc/general-faq.html.in meme-5.3.3/doc/getsize.html meme-5.3.3/doc/glam2.html meme-5.3.3/doc/glam2_alphabet.html meme-5.3.3/doc/GLAM2_method.pdf meme-5.3.3/doc/glam2_tut.html meme-5.3.3/doc/glam2format.html meme-5.3.3/doc/glam2mask.html meme-5.3.3/doc/glam2scan.html meme-5.3.3/doc/godag-format.html meme-5.3.3/doc/gomo-output-format.html meme-5.3.3/doc/gomo.html meme-5.3.3/doc/gomo_highlight.html meme-5.3.3/doc/images/ meme-5.3.3/doc/install.html.in meme-5.3.3/doc/ismb94.pdf meme-5.3.3/doc/iupac.html meme-5.3.3/doc/iupac2meme.html meme-5.3.3/doc/jaspar2meme.html meme-5.3.3/doc/js/ meme-5.3.3/doc/log-hmm.html meme-5.3.3/doc/Makefile.am meme-5.3.3/doc/Makefile.in meme-5.3.3/doc/mast.html meme-5.3.3/doc/matrix2meme.html meme-5.3.3/doc/mcast-output-format.html meme-5.3.3/doc/mcast.html meme-5.3.3/doc/meme-chip-output-format.html meme-5.3.3/doc/meme-chip.html meme-5.3.3/doc/meme-format.html meme-5.3.3/doc/meme-get-motif.html meme-5.3.3/doc/meme-rename.html meme-5.3.3/doc/meme.html meme-5.3.3/doc/meme2alph.html meme-5.3.3/doc/meme2images.html meme-5.3.3/doc/meme2meme.html meme-5.3.3/doc/mhmm-format.html meme-5.3.3/doc/mhmm.html meme-5.3.3/doc/mhmm2html.html meme-5.3.3/doc/mhmme.html meme-5.3.3/doc/mhmms.html meme-5.3.3/doc/mhmmscan-format.html meme-5.3.3/doc/mhmmscan.html meme-5.3.3/doc/momo-output-format.html meme-5.3.3/doc/momo.html meme-5.3.3/doc/motif-consensus.html meme-5.3.3/doc/motif-shuffle-columns.html meme-5.3.3/doc/motif_conversion.html meme-5.3.3/doc/motiph.html meme-5.3.3/doc/news.txt meme-5.3.3/doc/nmica2meme.html meme-5.3.3/doc/overview.html meme-5.3.3/doc/pmp_bf.html meme-5.3.3/doc/priority2meme.html meme-5.3.3/doc/psm-format.html meme-5.3.3/doc/psp-format.html meme-5.3.3/doc/psp-gen.html meme-5.3.3/doc/purge.html meme-5.3.3/doc/qvalue.html meme-5.3.3/doc/reconcile-tree-alignment.html meme-5.3.3/doc/reduce-alignment.html meme-5.3.3/doc/release-notes.html meme-5.3.3/doc/remove-alignment-gaps.html meme-5.3.3/doc/rna2meme.html meme-5.3.3/doc/scpd2meme.html meme-5.3.3/doc/scripting.html.in meme-5.3.3/doc/server_down.html meme-5.3.3/doc/shadow.html meme-5.3.3/doc/sites2meme.html meme-5.3.3/doc/spamo-output-format.html meme-5.3.3/doc/spamo.html meme-5.3.3/doc/streme-tutorial.html meme-5.3.3/doc/streme.html meme-5.3.3/doc/taipale2meme.html meme-5.3.3/doc/tamo2meme.html meme-5.3.3/doc/tgene-output-format.html meme-5.3.3/doc/tgene-tutorial.html meme-5.3.3/doc/tgene.html meme-5.3.3/doc/tomtom-output-format.html meme-5.3.3/doc/tomtom.html meme-5.3.3/doc/transfac-format.html meme-5.3.3/doc/transfac2meme.html meme-5.3.3/doc/uniprobe2meme.html meme-5.3.3/doc/update-sequence-db.html meme-5.3.3/doc/js/centrimo_graph.js meme-5.3.3/doc/js/constants.js.in meme-5.3.3/doc/js/delay_draw.js meme-5.3.3/doc/js/eps_context.js meme-5.3.3/doc/js/Makefile.am meme-5.3.3/doc/js/Makefile.in meme-5.3.3/doc/js/manual.js meme-5.3.3/doc/js/Markdown.Converter.js meme-5.3.3/doc/js/Markdown.Converter.LICENSE meme-5.3.3/doc/js/menu-configure.js.in meme-5.3.3/doc/js/menu-data.js.in meme-5.3.3/doc/js/menu-path.js meme-5.3.3/doc/js/menu.js.in meme-5.3.3/doc/js/motif_logo.js meme-5.3.3/doc/js/shared-doc.js meme-5.3.3/doc/js/simple-shared-doc.js meme-5.3.3/doc/js/spamo_graph.js meme-5.3.3/doc/js/tgene_doc.js meme-5.3.3/doc/js/utilities.js meme-5.3.3/doc/images/ame_icon.png meme-5.3.3/doc/images/centrimo_icon.png meme-5.3.3/doc/images/dreme_icon.png meme-5.3.3/doc/images/exp28b.1.anr.png meme-5.3.3/doc/images/exp28b.1.oops.png meme-5.3.3/doc/images/exp28b.1.zoops.png meme-5.3.3/doc/images/exp28b.6.anr.png meme-5.3.3/doc/images/exp28b.6.oops.png meme-5.3.3/doc/images/exp28b.6.zoops.png meme-5.3.3/doc/images/exp28d.kmers.png meme-5.3.3/doc/images/exp28d.triples.png meme-5.3.3/doc/images/exp4b.dna.memory.seqlen.png meme-5.3.3/doc/images/exp4b.dna.time.seqlen.png meme-5.3.3/doc/images/exp4b.protein.memory.seqlen.png meme-5.3.3/doc/images/exp4b.protein.time.seqlen.png meme-5.3.3/doc/images/exp4b.rna.memory.seqlen.png meme-5.3.3/doc/images/exp4b.rna.time.seqlen.png meme-5.3.3/doc/images/fimo_icon.png meme-5.3.3/doc/images/glam2_icon.png meme-5.3.3/doc/images/glam2scan_icon.png meme-5.3.3/doc/images/gomo_icon.png meme-5.3.3/doc/images/gtscan_icon.png meme-5.3.3/doc/images/improved_icon.png meme-5.3.3/doc/images/Makefile.am meme-5.3.3/doc/images/Makefile.in meme-5.3.3/doc/images/mast_icon.png meme-5.3.3/doc/images/mcast_icon.png meme-5.3.3/doc/images/meme_icon.png meme-5.3.3/doc/images/memechip_icon.png meme-5.3.3/doc/images/memesuite_icon.ico meme-5.3.3/doc/images/memesuite_icon.png meme-5.3.3/doc/images/momo_icon.png meme-5.3.3/doc/images/new_icon.png meme-5.3.3/doc/images/spamo_icon.png meme-5.3.3/doc/images/streme_icon.png meme-5.3.3/doc/images/tgene_icon.png meme-5.3.3/doc/images/tomtom_icon.png meme-5.3.3/doc/images/ucsd_logo.png meme-5.3.3/doc/images/unr_logo.png meme-5.3.3/doc/images/uq_logo.png meme-5.3.3/doc/images/UWlogo150p.gif meme-5.3.3/doc/images/webserver_schema.png meme-5.3.3/doc/examples/ame_example_output_files/ meme-5.3.3/doc/examples/centrimo_example_output_files/ meme-5.3.3/doc/examples/compute_prior_dist_example_output_files/ meme-5.3.3/doc/examples/create_examples.pl.in meme-5.3.3/doc/examples/dreme_example_output_files/ meme-5.3.3/doc/examples/example-datasets/ meme-5.3.3/doc/examples/example-datasets.mk meme-5.3.3/doc/examples/examples.mk meme-5.3.3/doc/examples/fimo_example_output_files/ meme-5.3.3/doc/examples/glam2-aa-alph.txt meme-5.3.3/doc/examples/glam2-dna-alph.txt meme-5.3.3/doc/examples/glam2_example_output_files/ meme-5.3.3/doc/examples/glam2scan_example_output_files/ meme-5.3.3/doc/examples/gomo_example_output_files/ meme-5.3.3/doc/examples/Makefile.am meme-5.3.3/doc/examples/Makefile.in meme-5.3.3/doc/examples/mast_example_output_files/ meme-5.3.3/doc/examples/mcast_example_output_files/ meme-5.3.3/doc/examples/meme_example_output_files/ meme-5.3.3/doc/examples/memechip_example_output_files/ meme-5.3.3/doc/examples/momo_example_output_files/ meme-5.3.3/doc/examples/motiph_example_output_files/ meme-5.3.3/doc/examples/prior30.plib meme-5.3.3/doc/examples/sample-dna-aln.glam2 meme-5.3.3/doc/examples/sample-dna-motif.meme meme-5.3.3/doc/examples/sample-protein-aln.glam2 meme-5.3.3/doc/examples/sample-protein-motif.meme meme-5.3.3/doc/examples/sample_opal_scripts/ meme-5.3.3/doc/examples/small-tide-mod.txt meme-5.3.3/doc/examples/spamo_example_output_files/ meme-5.3.3/doc/examples/streme_example_output_files/ meme-5.3.3/doc/examples/tgene_example_output_files/ meme-5.3.3/doc/examples/tomtom_example_output_files/ meme-5.3.3/doc/examples/tomtom_example_output_files/tomtom.html meme-5.3.3/doc/examples/tomtom_example_output_files/tomtom.tsv meme-5.3.3/doc/examples/tomtom_example_output_files/tomtom.xml meme-5.3.3/doc/examples/tgene_example_output_files/HistLev+noise.H3k27ac.tsv meme-5.3.3/doc/examples/tgene_example_output_files/HistLev+noise.H3k4me3.tsv meme-5.3.3/doc/examples/tgene_example_output_files/HistLev.H3k27ac.tsv meme-5.3.3/doc/examples/tgene_example_output_files/HistLev.H3k4me3.tsv meme-5.3.3/doc/examples/tgene_example_output_files/links.tsv meme-5.3.3/doc/examples/tgene_example_output_files/tgene.html meme-5.3.3/doc/examples/tgene_example_output_files/TrExp+noise.tsv meme-5.3.3/doc/examples/tgene_example_output_files/TrExp.tsv meme-5.3.3/doc/examples/streme_example_output_files/streme.html meme-5.3.3/doc/examples/streme_example_output_files/streme.txt meme-5.3.3/doc/examples/streme_example_output_files/streme.xml meme-5.3.3/doc/examples/spamo_example_output_files/spamo.html meme-5.3.3/doc/examples/spamo_example_output_files/spamo.tsv meme-5.3.3/doc/examples/sample_opal_scripts/crp0.fasta meme-5.3.3/doc/examples/sample_opal_scripts/crp0.meme.xml meme-5.3.3/doc/examples/sample_opal_scripts/FimoClient.pl meme-5.3.3/doc/examples/sample_opal_scripts/FimoClient.py meme-5.3.3/doc/examples/sample_opal_scripts/Makefile.am meme-5.3.3/doc/examples/sample_opal_scripts/Makefile.in meme-5.3.3/doc/examples/sample_opal_scripts/MemeClient.pl meme-5.3.3/doc/examples/sample_opal_scripts/MemeClient.py meme-5.3.3/doc/examples/motiph_example_output_files/cisml-to-html.xsl meme-5.3.3/doc/examples/motiph_example_output_files/cisml.css meme-5.3.3/doc/examples/motiph_example_output_files/motiph.gff meme-5.3.3/doc/examples/motiph_example_output_files/motiph.html meme-5.3.3/doc/examples/motiph_example_output_files/motiph.txt meme-5.3.3/doc/examples/motiph_example_output_files/motiph.xml meme-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_Dxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_Pxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_xxxxxK.png meme-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_Y79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/momo.html meme-5.3.3/doc/examples/momo_example_output_files/momo.tsv meme-5.3.3/doc/examples/momo_example_output_files/momo.txt meme-5.3.3/doc/examples/momo_example_output_files/RxxSxx_S79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xLxxxx_S79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxKRxx_S79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxLxxx_T79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxRxx_S79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxNx_S79.9_xDExxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxG_S79.9_xxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxH_S79.9_Dxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_DxExxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_Dxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_NExxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_Pxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xDxxKx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xDxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xExxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xNxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_T79.9_Pxxxxx.png meme-5.3.3/doc/examples/momo_example_output_files/xxxxxx_T79.9_xDxxxx.png meme-5.3.3/doc/examples/memechip_example_output_files/background meme-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/ meme-5.3.3/doc/examples/memechip_example_output_files/combined.meme meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/ meme-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/ meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/ meme-5.3.3/doc/examples/memechip_example_output_files/Klf1.fna meme-5.3.3/doc/examples/memechip_example_output_files/meme-chip.html meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/ meme-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/ meme-5.3.3/doc/examples/memechip_example_output_files/motif_alignment.txt meme-5.3.3/doc/examples/memechip_example_output_files/progress_log.txt meme-5.3.3/doc/examples/memechip_example_output_files/seqs-centered meme-5.3.3/doc/examples/memechip_example_output_files/seqs-shuffled meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/ meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/ meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/ meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/ meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/ meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/ meme-5.3.3/doc/examples/memechip_example_output_files/streme_out/ meme-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/ meme-5.3.3/doc/examples/memechip_example_output_files/summary.tsv meme-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.html meme-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.tsv meme-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.xml meme-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.html meme-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.txt meme-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.xml meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/spamo.html meme-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/spamo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.html meme-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.tsv meme-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.xml meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo1.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo1.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo2.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo2.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo3.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo3.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc1.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc1.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc2.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc2.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc3.eps meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc3.png meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.html meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.txt meme-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/cisml.xml meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.gff meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.html meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.xml meme-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.html meme-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.tsv meme-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.xml meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.html meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.txt meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.xml meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m01nc_MCRCCCW.png meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m01rc_WGGGYGK.png meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m02nc_TTATCW.png meme-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m02rc_WGATAA.png meme-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/centrimo.html meme-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/centrimo.tsv meme-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/site_counts.txt meme-5.3.3/doc/examples/meme_example_output_files/logo1.eps meme-5.3.3/doc/examples/meme_example_output_files/logo1.png meme-5.3.3/doc/examples/meme_example_output_files/logo2.eps meme-5.3.3/doc/examples/meme_example_output_files/logo2.png meme-5.3.3/doc/examples/meme_example_output_files/logo3.eps meme-5.3.3/doc/examples/meme_example_output_files/logo3.png meme-5.3.3/doc/examples/meme_example_output_files/logo_rc1.eps meme-5.3.3/doc/examples/meme_example_output_files/logo_rc1.png meme-5.3.3/doc/examples/meme_example_output_files/logo_rc2.eps meme-5.3.3/doc/examples/meme_example_output_files/logo_rc2.png meme-5.3.3/doc/examples/meme_example_output_files/logo_rc3.eps meme-5.3.3/doc/examples/meme_example_output_files/logo_rc3.png meme-5.3.3/doc/examples/meme_example_output_files/meme.html meme-5.3.3/doc/examples/meme_example_output_files/meme.txt meme-5.3.3/doc/examples/meme_example_output_files/meme.xml meme-5.3.3/doc/examples/mcast_example_output_files/cisml.xml meme-5.3.3/doc/examples/mcast_example_output_files/mcast.gff meme-5.3.3/doc/examples/mcast_example_output_files/mcast.html meme-5.3.3/doc/examples/mcast_example_output_files/mcast.tsv meme-5.3.3/doc/examples/mcast_example_output_files/mcast.xml meme-5.3.3/doc/examples/mast_example_output_files/mast.html meme-5.3.3/doc/examples/mast_example_output_files/mast.txt meme-5.3.3/doc/examples/mast_example_output_files/mast.xml meme-5.3.3/doc/examples/gomo_example_output_files/gomo.html meme-5.3.3/doc/examples/gomo_example_output_files/gomo.tsv meme-5.3.3/doc/examples/gomo_example_output_files/gomo.xml meme-5.3.3/doc/examples/gomo_example_output_files/res/ meme-5.3.3/doc/examples/gomo_example_output_files/res/logo1.png meme-5.3.3/doc/examples/gomo_example_output_files/res/logo2.png meme-5.3.3/doc/examples/gomo_example_output_files/res/logo3.png meme-5.3.3/doc/examples/glam2scan_example_output_files/glam2scan.html meme-5.3.3/doc/examples/glam2scan_example_output_files/glam2scan.txt meme-5.3.3/doc/examples/glam2_example_output_files/glam2.html meme-5.3.3/doc/examples/glam2_example_output_files/glam2.meme meme-5.3.3/doc/examples/glam2_example_output_files/glam2.txt meme-5.3.3/doc/examples/glam2_example_output_files/logo1.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo1.png meme-5.3.3/doc/examples/glam2_example_output_files/logo10.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo10.png meme-5.3.3/doc/examples/glam2_example_output_files/logo2.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo2.png meme-5.3.3/doc/examples/glam2_example_output_files/logo3.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo3.png meme-5.3.3/doc/examples/glam2_example_output_files/logo4.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo4.png meme-5.3.3/doc/examples/glam2_example_output_files/logo5.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo5.png meme-5.3.3/doc/examples/glam2_example_output_files/logo6.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo6.png meme-5.3.3/doc/examples/glam2_example_output_files/logo7.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo7.png meme-5.3.3/doc/examples/glam2_example_output_files/logo8.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo8.png meme-5.3.3/doc/examples/glam2_example_output_files/logo9.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo9.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc1.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc1.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc10.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc10.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc2.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc2.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc3.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc3.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc4.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc4.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc5.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc5.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc6.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc6.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc7.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc7.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc8.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc8.png meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc9.eps meme-5.3.3/doc/examples/glam2_example_output_files/logo_ssc9.png meme-5.3.3/doc/examples/fimo_example_output_files/cisml.xml meme-5.3.3/doc/examples/fimo_example_output_files/fimo.gff meme-5.3.3/doc/examples/fimo_example_output_files/fimo.html meme-5.3.3/doc/examples/fimo_example_output_files/fimo.tsv meme-5.3.3/doc/examples/fimo_example_output_files/fimo.xml meme-5.3.3/doc/examples/example-datasets/adh.faa meme-5.3.3/doc/examples/example-datasets/adh.meme meme-5.3.3/doc/examples/example-datasets/At.faa meme-5.3.3/doc/examples/example-datasets/At.glam2 meme-5.3.3/doc/examples/example-datasets/crp0.fna meme-5.3.3/doc/examples/example-datasets/crp0.meme meme-5.3.3/doc/examples/example-datasets/dpinteract.meme meme-5.3.3/doc/examples/example-datasets/dpinteract_subset.meme meme-5.3.3/doc/examples/example-datasets/Klf1.fna meme-5.3.3/doc/examples/example-datasets/Klf1.meme meme-5.3.3/doc/examples/example-datasets/lex0.fna meme-5.3.3/doc/examples/example-datasets/mm9_tss_500bp_sampled_1000.fna meme-5.3.3/doc/examples/example-datasets/P300.chr21.bed meme-5.3.3/doc/examples/example-datasets/some_vertebrates.meme meme-5.3.3/doc/examples/example-datasets/STRGGTCAN.meme meme-5.3.3/doc/examples/dreme_example_output_files/dreme.html meme-5.3.3/doc/examples/dreme_example_output_files/dreme.txt meme-5.3.3/doc/examples/dreme_example_output_files/dreme.xml meme-5.3.3/doc/examples/dreme_example_output_files/m01nc_CCMCRCCC.png meme-5.3.3/doc/examples/dreme_example_output_files/m01rc_GGGYGKGG.png meme-5.3.3/doc/examples/dreme_example_output_files/m02nc_BTTATCW.png meme-5.3.3/doc/examples/dreme_example_output_files/m02rc_WGATAAV.png meme-5.3.3/doc/examples/dreme_example_output_files/m03nc_MCRCCCA.png meme-5.3.3/doc/examples/dreme_example_output_files/m03rc_TGGGYGK.png meme-5.3.3/doc/examples/dreme_example_output_files/m04nc_RARGAAA.png meme-5.3.3/doc/examples/dreme_example_output_files/m04rc_TTTCYTY.png meme-5.3.3/doc/examples/dreme_example_output_files/m05nc_AKAAAM.png meme-5.3.3/doc/examples/dreme_example_output_files/m05rc_KTTTMT.png meme-5.3.3/doc/examples/dreme_example_output_files/m06nc_CTGTSTS.png meme-5.3.3/doc/examples/dreme_example_output_files/m06rc_SASACAG.png meme-5.3.3/doc/examples/dreme_example_output_files/m07nc_AGGGCGK.png meme-5.3.3/doc/examples/dreme_example_output_files/m07rc_MCGCCCT.png meme-5.3.3/doc/examples/dreme_example_output_files/m08nc_CCTKCCY.png meme-5.3.3/doc/examples/dreme_example_output_files/m08rc_RGGMAGG.png meme-5.3.3/doc/examples/dreme_example_output_files/m09nc_TTAAAAW.png meme-5.3.3/doc/examples/dreme_example_output_files/m09rc_WTTTTAA.png meme-5.3.3/doc/examples/dreme_example_output_files/m10nc_AAATAH.png meme-5.3.3/doc/examples/dreme_example_output_files/m10rc_DTATTT.png meme-5.3.3/doc/examples/dreme_example_output_files/m11nc_CATYTCC.png meme-5.3.3/doc/examples/dreme_example_output_files/m11rc_GGARATG.png meme-5.3.3/doc/examples/dreme_example_output_files/m12nc_CAGMCAC.png meme-5.3.3/doc/examples/dreme_example_output_files/m12rc_GTGKCTG.png meme-5.3.3/doc/examples/dreme_example_output_files/m13nc_CACAGY.png meme-5.3.3/doc/examples/dreme_example_output_files/m13rc_RCTGTG.png meme-5.3.3/doc/examples/dreme_example_output_files/m14nc_CTGGRGA.png meme-5.3.3/doc/examples/dreme_example_output_files/m14rc_TCYCCAG.png meme-5.3.3/doc/examples/dreme_example_output_files/m15nc_SACGTGA.png meme-5.3.3/doc/examples/dreme_example_output_files/m15rc_TCACGTS.png meme-5.3.3/doc/examples/compute_prior_dist_example_output_files/Makefile.am meme-5.3.3/doc/examples/compute_prior_dist_example_output_files/Makefile.in meme-5.3.3/doc/examples/compute_prior_dist_example_output_files/prior.dist.txt meme-5.3.3/doc/examples/centrimo_example_output_files/centrimo.html meme-5.3.3/doc/examples/centrimo_example_output_files/centrimo.tsv meme-5.3.3/doc/examples/centrimo_example_output_files/site_counts.txt meme-5.3.3/doc/examples/ame_example_output_files/ame.html meme-5.3.3/doc/examples/ame_example_output_files/ame.tsv meme-5.3.3/doc/examples/ame_example_output_files/sequences.tsv meme-5.3.3/doc/css/Makefile.am meme-5.3.3/doc/css/Makefile.in meme-5.3.3/doc/css/menu.css meme-5.3.3/doc/css/style.css meme-5.3.3/config/compile meme-5.3.3/config/config.guess meme-5.3.3/config/config.sub meme-5.3.3/config/depcomp meme-5.3.3/config/install-sh meme-5.3.3/config/ltmain.sh meme-5.3.3/config/missing meme-5.3.3/config/mkinstalldirs checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make sets $(MAKE)... (cached) yes checking for ld... /usr/bin/ld checking for sed... (cached) /usr/bin/sed checking for sendmail... /usr/sbin/sendmail checking for perl... /usr/bin/perl checking for convert... /usr/bin/convert checking for gs... /usr/bin/gs checking for xml2-config... /usr/bin/xml2-config checking for xslt-config... /usr/bin/xslt-config checking for ant... /usr/bin/ant checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes checking for compress in -lz... yes checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for pid_t... yes checking for size_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking return type of signal handlers... void checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for floor... yes checking for getcwd... yes checking for gethostbyname... yes checking for isascii... yes checking for memset... yes checking for pow... yes checking for rint... yes checking for socket... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strdup... yes checking for strspn... yes checking for strstr... yes checking for strlcpy... no checking for mpicc... /usr/bin/mpicc checking for mpirun... /usr/bin/mpirun checking for MPI_Comm_rank in -lmpi... yes checking for "/var/lib/meme-suite"... yes checking for "/tmp"... yes checking for perl... (cached) /usr/bin/perl checking for python... /usr/bin/python checking whether /usr/bin/python version is >= 2.7... yes checking for /usr/bin/python version... 2.7 checking for /usr/bin/python platform... linux2 checking for /usr/bin/python script directory... ${prefix}/lib/python2.7/site-packages checking for /usr/bin/python extension module directory... ${exec_prefix}/lib/python2.7/site-packages checking for convert... (cached) /usr/bin/convert checking for gs... (cached) /usr/bin/gs checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/css/Makefile config.status: creating doc/examples/Makefile config.status: creating doc/examples/compute_prior_dist_example_output_files/Makefile config.status: creating doc/examples/sample_opal_scripts/Makefile config.status: creating doc/images/Makefile config.status: creating doc/js/Makefile config.status: creating etc/Makefile config.status: creating src/filters/Makefile config.status: creating src/filters/purge/Makefile config.status: creating src/filters/dust/Makefile config.status: creating scripts/Makefile config.status: creating src/Makefile config.status: creating src/libxml2/Makefile config.status: creating src/libxml2/include/Makefile config.status: creating src/libxml2/include/libxml/Makefile config.status: creating src/libxslt/Makefile config.status: creating src/parallel/Makefile config.status: creating tests/Makefile config.status: creating tests/ame/Makefile config.status: creating tests/centrimo/Makefile config.status: creating tests/clustalw2fasta/Makefile config.status: creating tests/common/Makefile config.status: creating tests/common/motif.crp0/Makefile config.status: creating tests/common/motif.Puf3p/Makefile config.status: creating tests/create-priors/Makefile config.status: creating tests/draw-mhmm/Makefile config.status: creating tests/dreme/Makefile config.status: creating tests/fasta-center/Makefile config.status: creating tests/fimo/Makefile config.status: creating tests/glam2/Makefile config.status: creating tests/glam2scan/Makefile config.status: creating tests/gomo/Makefile config.status: creating tests/mast/Makefile config.status: creating tests/mcast/Makefile config.status: creating tests/meme/Makefile config.status: creating tests/meme-chip/Makefile config.status: creating tests/mhmm/Makefile config.status: creating tests/mhmms/Makefile config.status: creating tests/mhmmscan/Makefile config.status: creating tests/momo/Makefile config.status: creating tests/motiph/Makefile config.status: creating tests/psp-gen/Makefile config.status: creating tests/qvalue/Makefile config.status: creating tests/scaffold/Makefile config.status: creating tests/spamo/Makefile config.status: creating tests/streme/Makefile config.status: creating tests/scripts/Makefile config.status: creating tests/tgene/Makefile config.status: creating tests/tomtom/Makefile config.status: creating tests/web/Makefile config.status: creating website/Makefile config.status: creating website/templates/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ======================== Configuration parameters ======================== Install path: /usr Install UID: Version: 5.3.3 C compiler: gcc C compiler flags: -std=gnu89 -fno-common -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O3 Linker: /usr/bin/ld Special Libs: -lmpi -lz -lm MPICC /usr/bin/mpicc MPIRUN /usr/bin/mpirun MPI_CMD /usr/bin/mpirun -np MPIINC -DMPI -I/usr/include MPILIBDIR /usr/lib MPIFLAGS -DPARALLEL OPAL URL: no OPAL DEPLOY DIRECTORY: BUILD LIBXML2: no LIBXML2 compiler flags: -I/usr/include/libxml2 LIBXML2 libs: -lxml2 -lz -llzma -lm -ldl BUILD LIBXSLT: no LIBXSLT compiler flags: -I/usr/include/libxml2 LIBXSLT libs: -lxslt -lxml2 -lm SOURCE URL: https://meme-suite.org WEBSITE URL: http://meme-suite.org ALTERNATE WEBSITE URL: PREVIOUS VERSION URL: PREVIOUS VERSION: NOTICES URL: ./notices.txt NEWS URL: ./news.txt WEBSITE CONTACT: DEVELOPER CONTACT: meme-suite@uw.edu GO-SERVER URL: http://amigo.geneontology.org/amigo/term/GO_TERM_ID MEME DB: /var/lib/meme-suite MEME LOGS: ${localstatedir}/${PACKAGE_NAME}-5.3.3/LOGS MEME TEMP FILES: /tmp PERL: /usr/bin/perl PYTHON: /usr/bin/python PYTHON VERSiON: 2.7 CONVERT: /usr/bin/convert GHOSTSCRIPT: /usr/bin/gs QUOTA: EXPIRY: 4 DRMAA QUEUE: DRMAA QUEUE SHORT: MAXTIME: 14400 MAXTIME SHORT: 300 MAXMEMORY: 4 MAXMEMORY SHORT: 1 STREME LENGTH FACTOR: 1e6 Run the following commands to compile, test and install meme: make make test make install Then make sure that the following two directories are added to your PATH variable: /usr/bin /usr/libexec/meme-5.3.3 This can often be done by editing the file named .profile to add the following line: export PATH=/usr/bin:/usr/libexec/meme-5.3.3:$PATH make all-recursive make[1]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' Making all in src make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' echo '#define MEME_DIR "/usr"' >dir.h echo '#define DATA_DIR "/usr/share/meme-suite" ' >> dir.h echo '#define BIN_DIR "/usr/bin" ' >> dir.h echo '#define LIBEXEC_DIR "/usr/libexec/meme-suite" ' >> dir.h echo '#define TEMP_DIR "/tmp" ' >> dir.h echo '#define REVISION "1667d7719daf2af1693cc039ba463bc4d2304d23"' > projrel.h echo '#define ARCHIVE_DATE "Sun Feb 7 15:39:52 2021 -0800"' >> projrel.h make all-recursive make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making all in filters make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' Making all in purge make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' depbase=`echo afnio.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT afnio.o -MD -MP -MF $depbase.Tpo -c -o afnio.o afnio.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo alphabet.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT alphabet.o -MD -MP -MF $depbase.Tpo -c -o alphabet.o alphabet.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo block.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT block.o -MD -MP -MF $depbase.Tpo -c -o block.o block.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dheap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT dheap.o -MD -MP -MF $depbase.Tpo -c -o dheap.o dheap.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo gblast.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gblast.o -MD -MP -MF $depbase.Tpo -c -o gblast.o gblast.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo karlin.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT karlin.o -MD -MP -MF $depbase.Tpo -c -o karlin.o karlin.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mheap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT mheap.o -MD -MP -MF $depbase.Tpo -c -o mheap.o mheap.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mlist.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT mlist.o -MD -MP -MF $depbase.Tpo -c -o mlist.o mlist.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo pairaln.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT pairaln.o -MD -MP -MF $depbase.Tpo -c -o pairaln.o pairaln.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo pmain.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT pmain.o -MD -MP -MF $depbase.Tpo -c -o pmain.o pmain.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo purge.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT purge.o -MD -MP -MF $depbase.Tpo -c -o purge.o purge.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo random.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT random.o -MD -MP -MF $depbase.Tpo -c -o random.o random.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo seqset.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT seqset.o -MD -MP -MF $depbase.Tpo -c -o seqset.o seqset.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo sequence.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT sequence.o -MD -MP -MF $depbase.Tpo -c -o sequence.o sequence.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../../../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lmpi -lz -lm make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' Making all in dust make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' depbase=`echo tust.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT tust.o -MD -MP -MF $depbase.Tpo -c -o tust.o tust.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dust.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT dust.o -MD -MP -MF $depbase.Tpo -c -o dust.o dust.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfa.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT getfa.o -MD -MP -MF $depbase.Tpo -c -o getfa.o getfa.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../../../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o dust tust.o dust.o getfa.o -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o dust tust.o dust.o getfa.o -lmpi -lz -lm make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' Making all in libxml2 make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' Making all in libxslt make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' Making all in . make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ame-ame.o -MD -MP -MF .deps/ame-ame.Tpo -c -o ame-ame.o `test -f 'ame.c' || echo './'`ame.c mv -f .deps/ame-ame.Tpo .deps/ame-ame.Po gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ame-ramen_scan.o -MD -MP -MF .deps/ame-ramen_scan.Tpo -c -o ame-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c mv -f .deps/ame-ramen_scan.Tpo .deps/ame-ramen_scan.Po gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ame-fisher_exact.o -MD -MP -MF .deps/ame-fisher_exact.Tpo -c -o ame-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/ame-fisher_exact.Tpo .deps/ame-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alignment.lo -MD -MP -MF .deps/libcommon_la-alignment.Tpo -c -o libcommon_la-alignment.lo `test -f 'alignment.c' || echo './'`alignment.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alignment.lo -MD -MP -MF .deps/libcommon_la-alignment.Tpo -c alignment.c -fPIC -DPIC -o .libs/libcommon_la-alignment.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alignment.lo -MD -MP -MF .deps/libcommon_la-alignment.Tpo -c alignment.c -o libcommon_la-alignment.o >/dev/null 2>&1 mv -f .deps/libcommon_la-alignment.Tpo .deps/libcommon_la-alignment.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alph-in.lo -MD -MP -MF .deps/libcommon_la-alph-in.Tpo -c -o libcommon_la-alph-in.lo `test -f 'alph-in.c' || echo './'`alph-in.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alph-in.lo -MD -MP -MF .deps/libcommon_la-alph-in.Tpo -c alph-in.c -fPIC -DPIC -o .libs/libcommon_la-alph-in.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alph-in.lo -MD -MP -MF .deps/libcommon_la-alph-in.Tpo -c alph-in.c -o libcommon_la-alph-in.o >/dev/null 2>&1 mv -f .deps/libcommon_la-alph-in.Tpo .deps/libcommon_la-alph-in.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alphabet.lo -MD -MP -MF .deps/libcommon_la-alphabet.Tpo -c -o libcommon_la-alphabet.lo `test -f 'alphabet.c' || echo './'`alphabet.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alphabet.lo -MD -MP -MF .deps/libcommon_la-alphabet.Tpo -c alphabet.c -fPIC -DPIC -o .libs/libcommon_la-alphabet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-alphabet.lo -MD -MP -MF .deps/libcommon_la-alphabet.Tpo -c alphabet.c -o libcommon_la-alphabet.o >/dev/null 2>&1 mv -f .deps/libcommon_la-alphabet.Tpo .deps/libcommon_la-alphabet.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -fPIC -DPIC -o .libs/libcommon_la-array.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -o libcommon_la-array.o >/dev/null 2>&1 mv -f .deps/libcommon_la-array.Tpo .deps/libcommon_la-array.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array-list.lo -MD -MP -MF .deps/libcommon_la-array-list.Tpo -c -o libcommon_la-array-list.lo `test -f 'array-list.c' || echo './'`array-list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array-list.lo -MD -MP -MF .deps/libcommon_la-array-list.Tpo -c array-list.c -fPIC -DPIC -o .libs/libcommon_la-array-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-array-list.lo -MD -MP -MF .deps/libcommon_la-array-list.Tpo -c array-list.c -o libcommon_la-array-list.o >/dev/null 2>&1 mv -f .deps/libcommon_la-array-list.Tpo .deps/libcommon_la-array-list.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bates.lo -MD -MP -MF .deps/libcommon_la-bates.Tpo -c -o libcommon_la-bates.lo `test -f 'bates.c' || echo './'`bates.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bates.lo -MD -MP -MF .deps/libcommon_la-bates.Tpo -c bates.c -fPIC -DPIC -o .libs/libcommon_la-bates.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bates.lo -MD -MP -MF .deps/libcommon_la-bates.Tpo -c bates.c -o libcommon_la-bates.o >/dev/null 2>&1 mv -f .deps/libcommon_la-bates.Tpo .deps/libcommon_la-bates.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed.lo -MD -MP -MF .deps/libcommon_la-bed.Tpo -c -o libcommon_la-bed.lo `test -f 'bed.c' || echo './'`bed.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed.lo -MD -MP -MF .deps/libcommon_la-bed.Tpo -c bed.c -fPIC -DPIC -o .libs/libcommon_la-bed.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed.lo -MD -MP -MF .deps/libcommon_la-bed.Tpo -c bed.c -o libcommon_la-bed.o >/dev/null 2>&1 mv -f .deps/libcommon_la-bed.Tpo .deps/libcommon_la-bed.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed-io.lo -MD -MP -MF .deps/libcommon_la-bed-io.Tpo -c -o libcommon_la-bed-io.lo `test -f 'bed-io.c' || echo './'`bed-io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed-io.lo -MD -MP -MF .deps/libcommon_la-bed-io.Tpo -c bed-io.c -fPIC -DPIC -o .libs/libcommon_la-bed-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-bed-io.lo -MD -MP -MF .deps/libcommon_la-bed-io.Tpo -c bed-io.c -o libcommon_la-bed-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-bed-io.Tpo .deps/libcommon_la-bed-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binary-search.lo -MD -MP -MF .deps/libcommon_la-binary-search.Tpo -c -o libcommon_la-binary-search.lo `test -f 'binary-search.c' || echo './'`binary-search.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binary-search.lo -MD -MP -MF .deps/libcommon_la-binary-search.Tpo -c binary-search.c -fPIC -DPIC -o .libs/libcommon_la-binary-search.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binary-search.lo -MD -MP -MF .deps/libcommon_la-binary-search.Tpo -c binary-search.c -o libcommon_la-binary-search.o >/dev/null 2>&1 mv -f .deps/libcommon_la-binary-search.Tpo .deps/libcommon_la-binary-search.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binomial.lo -MD -MP -MF .deps/libcommon_la-binomial.Tpo -c -o libcommon_la-binomial.lo `test -f 'binomial.c' || echo './'`binomial.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binomial.lo -MD -MP -MF .deps/libcommon_la-binomial.Tpo -c binomial.c -fPIC -DPIC -o .libs/libcommon_la-binomial.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-binomial.lo -MD -MP -MF .deps/libcommon_la-binomial.Tpo -c binomial.c -o libcommon_la-binomial.o >/dev/null 2>&1 mv -f .deps/libcommon_la-binomial.Tpo .deps/libcommon_la-binomial.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-build-hmm.lo -MD -MP -MF .deps/libcommon_la-build-hmm.Tpo -c -o libcommon_la-build-hmm.lo `test -f 'build-hmm.c' || echo './'`build-hmm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-build-hmm.lo -MD -MP -MF .deps/libcommon_la-build-hmm.Tpo -c build-hmm.c -fPIC -DPIC -o .libs/libcommon_la-build-hmm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-build-hmm.lo -MD -MP -MF .deps/libcommon_la-build-hmm.Tpo -c build-hmm.c -o libcommon_la-build-hmm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-build-hmm.Tpo .deps/libcommon_la-build-hmm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-buffer.lo -MD -MP -MF .deps/libcommon_la-buffer.Tpo -c -o libcommon_la-buffer.lo `test -f 'buffer.c' || echo './'`buffer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-buffer.lo -MD -MP -MF .deps/libcommon_la-buffer.Tpo -c buffer.c -fPIC -DPIC -o .libs/libcommon_la-buffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-buffer.lo -MD -MP -MF .deps/libcommon_la-buffer.Tpo -c buffer.c -o libcommon_la-buffer.o >/dev/null 2>&1 mv -f .deps/libcommon_la-buffer.Tpo .deps/libcommon_la-buffer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ceqlogo.lo -MD -MP -MF .deps/libcommon_la-ceqlogo.Tpo -c -o libcommon_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ceqlogo.lo -MD -MP -MF .deps/libcommon_la-ceqlogo.Tpo -c ceqlogo.c -fPIC -DPIC -o .libs/libcommon_la-ceqlogo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ceqlogo.lo -MD -MP -MF .deps/libcommon_la-ceqlogo.Tpo -c ceqlogo.c -o libcommon_la-ceqlogo.o >/dev/null 2>&1 mv -f .deps/libcommon_la-ceqlogo.Tpo .deps/libcommon_la-ceqlogo.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml.lo -MD -MP -MF .deps/libcommon_la-cisml.Tpo -c -o libcommon_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml.lo -MD -MP -MF .deps/libcommon_la-cisml.Tpo -c cisml.c -fPIC -DPIC -o .libs/libcommon_la-cisml.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml.lo -MD -MP -MF .deps/libcommon_la-cisml.Tpo -c cisml.c -o libcommon_la-cisml.o >/dev/null 2>&1 mv -f .deps/libcommon_la-cisml.Tpo .deps/libcommon_la-cisml.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml-sax.lo -MD -MP -MF .deps/libcommon_la-cisml-sax.Tpo -c -o libcommon_la-cisml-sax.lo `test -f 'cisml-sax.c' || echo './'`cisml-sax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml-sax.lo -MD -MP -MF .deps/libcommon_la-cisml-sax.Tpo -c cisml-sax.c -fPIC -DPIC -o .libs/libcommon_la-cisml-sax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-cisml-sax.lo -MD -MP -MF .deps/libcommon_la-cisml-sax.Tpo -c cisml-sax.c -o libcommon_la-cisml-sax.o >/dev/null 2>&1 mv -f .deps/libcommon_la-cisml-sax.Tpo .deps/libcommon_la-cisml-sax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-clustalw-io.lo -MD -MP -MF .deps/libcommon_la-clustalw-io.Tpo -c -o libcommon_la-clustalw-io.lo `test -f 'clustalw-io.c' || echo './'`clustalw-io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-clustalw-io.lo -MD -MP -MF .deps/libcommon_la-clustalw-io.Tpo -c clustalw-io.c -fPIC -DPIC -o .libs/libcommon_la-clustalw-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-clustalw-io.lo -MD -MP -MF .deps/libcommon_la-clustalw-io.Tpo -c clustalw-io.c -o libcommon_la-clustalw-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-clustalw-io.Tpo .deps/libcommon_la-clustalw-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dp.lo -MD -MP -MF .deps/libcommon_la-dp.Tpo -c -o libcommon_la-dp.lo `test -f 'dp.c' || echo './'`dp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dp.lo -MD -MP -MF .deps/libcommon_la-dp.Tpo -c dp.c -fPIC -DPIC -o .libs/libcommon_la-dp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dp.lo -MD -MP -MF .deps/libcommon_la-dp.Tpo -c dp.c -o libcommon_la-dp.o >/dev/null 2>&1 mv -f .deps/libcommon_la-dp.Tpo .deps/libcommon_la-dp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dreme-sax.lo -MD -MP -MF .deps/libcommon_la-dreme-sax.Tpo -c -o libcommon_la-dreme-sax.lo `test -f 'dreme-sax.c' || echo './'`dreme-sax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dreme-sax.lo -MD -MP -MF .deps/libcommon_la-dreme-sax.Tpo -c dreme-sax.c -fPIC -DPIC -o .libs/libcommon_la-dreme-sax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-dreme-sax.lo -MD -MP -MF .deps/libcommon_la-dreme-sax.Tpo -c dreme-sax.c -o libcommon_la-dreme-sax.o >/dev/null 2>&1 mv -f .deps/libcommon_la-dreme-sax.Tpo .deps/libcommon_la-dreme-sax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-eps2png.lo -MD -MP -MF .deps/libcommon_la-eps2png.Tpo -c -o libcommon_la-eps2png.lo `test -f 'eps2png.c' || echo './'`eps2png.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-eps2png.lo -MD -MP -MF .deps/libcommon_la-eps2png.Tpo -c eps2png.c -fPIC -DPIC -o .libs/libcommon_la-eps2png.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-eps2png.lo -MD -MP -MF .deps/libcommon_la-eps2png.Tpo -c eps2png.c -o libcommon_la-eps2png.o >/dev/null 2>&1 mv -f .deps/libcommon_la-eps2png.Tpo .deps/libcommon_la-eps2png.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-empirical-qvalue.lo -MD -MP -MF .deps/libcommon_la-empirical-qvalue.Tpo -c -o libcommon_la-empirical-qvalue.lo `test -f 'empirical-qvalue.c' || echo './'`empirical-qvalue.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-empirical-qvalue.lo -MD -MP -MF .deps/libcommon_la-empirical-qvalue.Tpo -c empirical-qvalue.c -fPIC -DPIC -o .libs/libcommon_la-empirical-qvalue.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-empirical-qvalue.lo -MD -MP -MF .deps/libcommon_la-empirical-qvalue.Tpo -c empirical-qvalue.c -o libcommon_la-empirical-qvalue.o >/dev/null 2>&1 mv -f .deps/libcommon_la-empirical-qvalue.Tpo .deps/libcommon_la-empirical-qvalue.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-evomodel.lo -MD -MP -MF .deps/libcommon_la-evomodel.Tpo -c -o libcommon_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-evomodel.lo -MD -MP -MF .deps/libcommon_la-evomodel.Tpo -c evomodel.c -fPIC -DPIC -o .libs/libcommon_la-evomodel.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-evomodel.lo -MD -MP -MF .deps/libcommon_la-evomodel.Tpo -c evomodel.c -o libcommon_la-evomodel.o >/dev/null 2>&1 mv -f .deps/libcommon_la-evomodel.Tpo .deps/libcommon_la-evomodel.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-io.lo -MD -MP -MF .deps/libcommon_la-fasta-io.Tpo -c -o libcommon_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-io.lo -MD -MP -MF .deps/libcommon_la-fasta-io.Tpo -c fasta-io.c -fPIC -DPIC -o .libs/libcommon_la-fasta-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-io.lo -MD -MP -MF .deps/libcommon_la-fasta-io.Tpo -c fasta-io.c -o libcommon_la-fasta-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-fasta-io.Tpo .deps/libcommon_la-fasta-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-get-markov.lo -MD -MP -MF .deps/libcommon_la-fasta-get-markov.Tpo -c -o libcommon_la-fasta-get-markov.lo `test -f 'fasta-get-markov.c' || echo './'`fasta-get-markov.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-get-markov.lo -MD -MP -MF .deps/libcommon_la-fasta-get-markov.Tpo -c fasta-get-markov.c -fPIC -DPIC -o .libs/libcommon_la-fasta-get-markov.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fasta-get-markov.lo -MD -MP -MF .deps/libcommon_la-fasta-get-markov.Tpo -c fasta-get-markov.c -o libcommon_la-fasta-get-markov.o >/dev/null 2>&1 mv -f .deps/libcommon_la-fasta-get-markov.Tpo .deps/libcommon_la-fasta-get-markov.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fitevd.lo -MD -MP -MF .deps/libcommon_la-fitevd.Tpo -c -o libcommon_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fitevd.lo -MD -MP -MF .deps/libcommon_la-fitevd.Tpo -c fitevd.c -fPIC -DPIC -o .libs/libcommon_la-fitevd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-fitevd.lo -MD -MP -MF .deps/libcommon_la-fitevd.Tpo -c fitevd.c -o libcommon_la-fitevd.o >/dev/null 2>&1 mv -f .deps/libcommon_la-fitevd.Tpo .deps/libcommon_la-fitevd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gendb.lo -MD -MP -MF .deps/libcommon_la-gendb.Tpo -c -o libcommon_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gendb.lo -MD -MP -MF .deps/libcommon_la-gendb.Tpo -c gendb.c -fPIC -DPIC -o .libs/libcommon_la-gendb.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gendb.lo -MD -MP -MF .deps/libcommon_la-gendb.Tpo -c gendb.c -o libcommon_la-gendb.o >/dev/null 2>&1 mv -f .deps/libcommon_la-gendb.Tpo .deps/libcommon_la-gendb.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf.lo -MD -MP -MF .deps/libcommon_la-gtf.Tpo -c -o libcommon_la-gtf.lo `test -f 'gtf.c' || echo './'`gtf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf.lo -MD -MP -MF .deps/libcommon_la-gtf.Tpo -c gtf.c -fPIC -DPIC -o .libs/libcommon_la-gtf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf.lo -MD -MP -MF .deps/libcommon_la-gtf.Tpo -c gtf.c -o libcommon_la-gtf.o >/dev/null 2>&1 mv -f .deps/libcommon_la-gtf.Tpo .deps/libcommon_la-gtf.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf-io.lo -MD -MP -MF .deps/libcommon_la-gtf-io.Tpo -c -o libcommon_la-gtf-io.lo `test -f 'gtf-io.c' || echo './'`gtf-io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf-io.lo -MD -MP -MF .deps/libcommon_la-gtf-io.Tpo -c gtf-io.c -fPIC -DPIC -o .libs/libcommon_la-gtf-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-gtf-io.lo -MD -MP -MF .deps/libcommon_la-gtf-io.Tpo -c gtf-io.c -o libcommon_la-gtf-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-gtf-io.Tpo .deps/libcommon_la-gtf-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -fPIC -DPIC -o .libs/libcommon_la-hash_table.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -o libcommon_la-hash_table.o >/dev/null 2>&1 mv -f .deps/libcommon_la-hash_table.Tpo .deps/libcommon_la-hash_table.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c -o libcommon_la-heap.lo `test -f 'heap.c' || echo './'`heap.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -fPIC -DPIC -o .libs/libcommon_la-heap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -o libcommon_la-heap.o >/dev/null 2>&1 mv -f .deps/libcommon_la-heap.Tpo .deps/libcommon_la-heap.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-data.lo -MD -MP -MF .deps/libcommon_la-html-data.Tpo -c -o libcommon_la-html-data.lo `test -f 'html-data.c' || echo './'`html-data.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-data.lo -MD -MP -MF .deps/libcommon_la-html-data.Tpo -c html-data.c -fPIC -DPIC -o .libs/libcommon_la-html-data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-data.lo -MD -MP -MF .deps/libcommon_la-html-data.Tpo -c html-data.c -o libcommon_la-html-data.o >/dev/null 2>&1 mv -f .deps/libcommon_la-html-data.Tpo .deps/libcommon_la-html-data.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-monolith.lo -MD -MP -MF .deps/libcommon_la-html-monolith.Tpo -c -o libcommon_la-html-monolith.lo `test -f 'html-monolith.c' || echo './'`html-monolith.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-monolith.lo -MD -MP -MF .deps/libcommon_la-html-monolith.Tpo -c html-monolith.c -fPIC -DPIC -o .libs/libcommon_la-html-monolith.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-html-monolith.lo -MD -MP -MF .deps/libcommon_la-html-monolith.Tpo -c html-monolith.c -o libcommon_la-html-monolith.o >/dev/null 2>&1 mv -f .deps/libcommon_la-html-monolith.Tpo .deps/libcommon_la-html-monolith.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c -o libcommon_la-io.lo `test -f 'io.c' || echo './'`io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -fPIC -DPIC -o .libs/libcommon_la-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -o libcommon_la-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-io.Tpo .deps/libcommon_la-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-checker.lo -MD -MP -MF .deps/libcommon_la-json-checker.Tpo -c -o libcommon_la-json-checker.lo `test -f 'json-checker.c' || echo './'`json-checker.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-checker.lo -MD -MP -MF .deps/libcommon_la-json-checker.Tpo -c json-checker.c -fPIC -DPIC -o .libs/libcommon_la-json-checker.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-checker.lo -MD -MP -MF .deps/libcommon_la-json-checker.Tpo -c json-checker.c -o libcommon_la-json-checker.o >/dev/null 2>&1 mv -f .deps/libcommon_la-json-checker.Tpo .deps/libcommon_la-json-checker.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c -o libcommon_la-json-reader.lo `test -f 'json-reader.c' || echo './'`json-reader.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c json-reader.c -fPIC -DPIC -o .libs/libcommon_la-json-reader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-reader.lo -MD -MP -MF .deps/libcommon_la-json-reader.Tpo -c json-reader.c -o libcommon_la-json-reader.o >/dev/null 2>&1 mv -f .deps/libcommon_la-json-reader.Tpo .deps/libcommon_la-json-reader.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c -o libcommon_la-json-writer.lo `test -f 'json-writer.c' || echo './'`json-writer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c json-writer.c -fPIC -DPIC -o .libs/libcommon_la-json-writer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-json-writer.lo -MD -MP -MF .deps/libcommon_la-json-writer.Tpo -c json-writer.c -o libcommon_la-json-writer.o >/dev/null 2>&1 mv -f .deps/libcommon_la-json-writer.Tpo .deps/libcommon_la-json-writer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c -o libcommon_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c karlin.c -fPIC -DPIC -o .libs/libcommon_la-karlin.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-karlin.lo -MD -MP -MF .deps/libcommon_la-karlin.Tpo -c karlin.c -o libcommon_la-karlin.o >/dev/null 2>&1 mv -f .deps/libcommon_la-karlin.Tpo .deps/libcommon_la-karlin.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c -o libcommon_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c linked-list.c -fPIC -DPIC -o .libs/libcommon_la-linked-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-linked-list.lo -MD -MP -MF .deps/libcommon_la-linked-list.Tpo -c linked-list.c -o libcommon_la-linked-list.o >/dev/null 2>&1 mv -f .deps/libcommon_la-linked-list.Tpo .deps/libcommon_la-linked-list.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c -o libcommon_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c log-hmm.c -fPIC -DPIC -o .libs/libcommon_la-log-hmm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log-hmm.lo -MD -MP -MF .deps/libcommon_la-log-hmm.Tpo -c log-hmm.c -o libcommon_la-log-hmm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-log-hmm.Tpo .deps/libcommon_la-log-hmm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log_erfc.lo -MD -MP -MF .deps/libcommon_la-log_erfc.Tpo -c -o libcommon_la-log_erfc.lo `test -f 'log_erfc.c' || echo './'`log_erfc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log_erfc.lo -MD -MP -MF .deps/libcommon_la-log_erfc.Tpo -c log_erfc.c -fPIC -DPIC -o .libs/libcommon_la-log_erfc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-log_erfc.lo -MD -MP -MF .deps/libcommon_la-log_erfc.Tpo -c log_erfc.c -o libcommon_la-log_erfc.o >/dev/null 2>&1 mv -f .deps/libcommon_la-log_erfc.Tpo .deps/libcommon_la-log_erfc.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c -o libcommon_la-logodds.lo `test -f 'logodds.c' || echo './'`logodds.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c logodds.c -fPIC -DPIC -o .libs/libcommon_la-logodds.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-logodds.lo -MD -MP -MF .deps/libcommon_la-logodds.Tpo -c logodds.c -o libcommon_la-logodds.o >/dev/null 2>&1 mv -f .deps/libcommon_la-logodds.Tpo .deps/libcommon_la-logodds.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c -o libcommon_la-mast-util.lo `test -f 'mast-util.c' || echo './'`mast-util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c mast-util.c -fPIC -DPIC -o .libs/libcommon_la-mast-util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mast-util.lo -MD -MP -MF .deps/libcommon_la-mast-util.Tpo -c mast-util.c -o libcommon_la-mast-util.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mast-util.Tpo .deps/libcommon_la-mast-util.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c -o libcommon_la-match.lo `test -f 'match.c' || echo './'`match.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c match.c -fPIC -DPIC -o .libs/libcommon_la-match.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-match.lo -MD -MP -MF .deps/libcommon_la-match.Tpo -c match.c -o libcommon_la-match.o >/dev/null 2>&1 mv -f .deps/libcommon_la-match.Tpo .deps/libcommon_la-match.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1 mv -f .deps/libcommon_la-matrix.Tpo .deps/libcommon_la-matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c -o libcommon_la-mcast-match.lo `test -f 'mcast-match.c' || echo './'`mcast-match.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c mcast-match.c -fPIC -DPIC -o .libs/libcommon_la-mcast-match.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mcast-match.lo -MD -MP -MF .deps/libcommon_la-mcast-match.Tpo -c mcast-match.c -o libcommon_la-mcast-match.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mcast-match.Tpo .deps/libcommon_la-mcast-match.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c -o libcommon_la-meme-sax.lo `test -f 'meme-sax.c' || echo './'`meme-sax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c meme-sax.c -fPIC -DPIC -o .libs/libcommon_la-meme-sax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-meme-sax.lo -MD -MP -MF .deps/libcommon_la-meme-sax.Tpo -c meme-sax.c -o libcommon_la-meme-sax.o >/dev/null 2>&1 mv -f .deps/libcommon_la-meme-sax.Tpo .deps/libcommon_la-meme-sax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c -o libcommon_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c metameme.c -fPIC -DPIC -o .libs/libcommon_la-metameme.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-metameme.lo -MD -MP -MF .deps/libcommon_la-metameme.Tpo -c metameme.c -o libcommon_la-metameme.o >/dev/null 2>&1 mv -f .deps/libcommon_la-metameme.Tpo .deps/libcommon_la-metameme.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c -o libcommon_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c mhmm.c -fPIC -DPIC -o .libs/libcommon_la-mhmm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm.lo -MD -MP -MF .deps/libcommon_la-mhmm.Tpo -c mhmm.c -o libcommon_la-mhmm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mhmm.Tpo .deps/libcommon_la-mhmm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c -o libcommon_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c mhmms.c -fPIC -DPIC -o .libs/libcommon_la-mhmms.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmms.lo -MD -MP -MF .deps/libcommon_la-mhmms.Tpo -c mhmms.c -o libcommon_la-mhmms.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mhmms.Tpo .deps/libcommon_la-mhmms.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c -o libcommon_la-mhmmscan.lo `test -f 'mhmmscan.c' || echo './'`mhmmscan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c mhmmscan.c -fPIC -DPIC -o .libs/libcommon_la-mhmmscan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmmscan.lo -MD -MP -MF .deps/libcommon_la-mhmmscan.Tpo -c mhmmscan.c -o libcommon_la-mhmmscan.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mhmmscan.Tpo .deps/libcommon_la-mhmmscan.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c -o libcommon_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c mhmm-state.c -fPIC -DPIC -o .libs/libcommon_la-mhmm-state.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mhmm-state.lo -MD -MP -MF .deps/libcommon_la-mhmm-state.Tpo -c mhmm-state.c -o libcommon_la-mhmm-state.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mhmm-state.Tpo .deps/libcommon_la-mhmm-state.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-algorithm.lo -MD -MP -MF .deps/libcommon_la-momo-algorithm.Tpo -c -o libcommon_la-momo-algorithm.lo `test -f 'momo-algorithm.c' || echo './'`momo-algorithm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-algorithm.lo -MD -MP -MF .deps/libcommon_la-momo-algorithm.Tpo -c momo-algorithm.c -fPIC -DPIC -o .libs/libcommon_la-momo-algorithm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-algorithm.lo -MD -MP -MF .deps/libcommon_la-momo-algorithm.Tpo -c momo-algorithm.c -o libcommon_la-momo-algorithm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-algorithm.Tpo .deps/libcommon_la-momo-algorithm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-input.lo -MD -MP -MF .deps/libcommon_la-momo-input.Tpo -c -o libcommon_la-momo-input.lo `test -f 'momo-input.c' || echo './'`momo-input.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-input.lo -MD -MP -MF .deps/libcommon_la-momo-input.Tpo -c momo-input.c -fPIC -DPIC -o .libs/libcommon_la-momo-input.o momo-input.c: In function ‘add_phospho_file_to_table’: momo-input.c:674:15: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 674 | strncat(sequence, "[", 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ momo-input.c:678:15: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 678 | strncat(sequence, "]", 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ momo-input.c: In function ‘get_tsv_mod_array’: momo-input.c:566:3: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 566 | strncat(*modless, sequence_mod_iterator, strlen(sequence_mod_iterator)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-input.lo -MD -MP -MF .deps/libcommon_la-momo-input.Tpo -c momo-input.c -o libcommon_la-momo-input.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-input.Tpo .deps/libcommon_la-momo-input.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-modl.lo -MD -MP -MF .deps/libcommon_la-momo-modl.Tpo -c -o libcommon_la-momo-modl.lo `test -f 'momo-modl.c' || echo './'`momo-modl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-modl.lo -MD -MP -MF .deps/libcommon_la-momo-modl.Tpo -c momo-modl.c -fPIC -DPIC -o .libs/libcommon_la-momo-modl.o momo-modl.c: In function ‘regexmotif_to_string’: momo-modl.c:227:7: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 227 | strncat(result, "_", 1); | ^~~~~~~~~~~~~~~~~~~~~~~ momo-modl.c:229:7: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 229 | strncat(result, "_", 1); | ^~~~~~~~~~~~~~~~~~~~~~~ momo-modl.c:231:7: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 231 | strncat(result, "x", 1); | ^~~~~~~~~~~~~~~~~~~~~~~ momo-modl.c:235:9: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 235 | strncat(result, "[", 1); | ^~~~~~~~~~~~~~~~~~~~~~~ momo-modl.c:243:9: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 243 | strncat(result, "]", 1); | ^~~~~~~~~~~~~~~~~~~~~~~ momo-modl.c:228:7: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 228 | strncat(result, mod_info->mod_name, strlen(mod_info->mod_name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-modl.lo -MD -MP -MF .deps/libcommon_la-momo-modl.Tpo -c momo-modl.c -o libcommon_la-momo-modl.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-modl.Tpo .deps/libcommon_la-momo-modl.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-motifx.lo -MD -MP -MF .deps/libcommon_la-momo-motifx.Tpo -c -o libcommon_la-momo-motifx.lo `test -f 'momo-motifx.c' || echo './'`momo-motifx.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-motifx.lo -MD -MP -MF .deps/libcommon_la-momo-motifx.Tpo -c momo-motifx.c -fPIC -DPIC -o .libs/libcommon_la-momo-motifx.o momo-motifx.c: In function ‘create_motifx_motif’: momo-motifx.c:267:5: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 267 | strncat(pattern_name, "_", 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ momo-motifx.c:269:5: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 269 | strncat(pattern_name, "_", 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ momo-motifx.c:266:5: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 266 | strncat(pattern_name, pattern, strlen(pattern)/2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ momo-motifx.c:266:36: note: length computed here 266 | strncat(pattern_name, pattern, strlen(pattern)/2); | ^~~~~~~~~~~~~~~ momo-motifx.c:268:5: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 268 | strncat(pattern_name, modname, strlen(modname)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-motifx.lo -MD -MP -MF .deps/libcommon_la-momo-motifx.Tpo -c momo-motifx.c -o libcommon_la-momo-motifx.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-motifx.Tpo .deps/libcommon_la-momo-motifx.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-output.lo -MD -MP -MF .deps/libcommon_la-momo-output.Tpo -c -o libcommon_la-momo-output.lo `test -f 'momo-output.c' || echo './'`momo-output.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-output.lo -MD -MP -MF .deps/libcommon_la-momo-output.Tpo -c momo-output.c -fPIC -DPIC -o .libs/libcommon_la-momo-output.o momo-output.c: In function ‘momo_print_motifs’: momo-output.c:202:7: warning: ‘strncat’ specified bound 4 equals source length [-Wstringop-overflow=] 202 | strncat(motif_png, ".png", 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ momo-output.c:216:7: warning: ‘strncat’ specified bound 1 equals source length [-Wstringop-overflow=] 216 | strncat(logo_file, "/", 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ momo-output.c:201:7: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 201 | strncat(motif_png, motif_name, strlen(motif_name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ momo-output.c:215:7: warning: ‘strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 215 | strncat(logo_file, options.output_dirname, strlen(options.output_dirname)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-output.lo -MD -MP -MF .deps/libcommon_la-momo-output.Tpo -c momo-output.c -o libcommon_la-momo-output.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-output.Tpo .deps/libcommon_la-momo-output.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-simple.lo -MD -MP -MF .deps/libcommon_la-momo-simple.Tpo -c -o libcommon_la-momo-simple.lo `test -f 'momo-simple.c' || echo './'`momo-simple.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-simple.lo -MD -MP -MF .deps/libcommon_la-momo-simple.Tpo -c momo-simple.c -fPIC -DPIC -o .libs/libcommon_la-momo-simple.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-momo-simple.lo -MD -MP -MF .deps/libcommon_la-momo-simple.Tpo -c momo-simple.c -o libcommon_la-momo-simple.o >/dev/null 2>&1 mv -f .deps/libcommon_la-momo-simple.Tpo .deps/libcommon_la-momo-simple.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif.Tpo .deps/libcommon_la-motif.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-db.lo -MD -MP -MF .deps/libcommon_la-motif-db.Tpo -c -o libcommon_la-motif-db.lo `test -f 'motif-db.c' || echo './'`motif-db.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-db.lo -MD -MP -MF .deps/libcommon_la-motif-db.Tpo -c motif-db.c -fPIC -DPIC -o .libs/libcommon_la-motif-db.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-db.lo -MD -MP -MF .deps/libcommon_la-motif-db.Tpo -c motif-db.c -o libcommon_la-motif-db.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-db.Tpo .deps/libcommon_la-motif-db.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c -o libcommon_la-motif-in.lo `test -f 'motif-in.c' || echo './'`motif-in.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c motif-in.c -fPIC -DPIC -o .libs/libcommon_la-motif-in.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in.lo -MD -MP -MF .deps/libcommon_la-motif-in.Tpo -c motif-in.c -o libcommon_la-motif-in.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in.Tpo .deps/libcommon_la-motif-in.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c -o libcommon_la-motif-in-common.lo `test -f 'motif-in-common.c' || echo './'`motif-in-common.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c motif-in-common.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-common.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-common.lo -MD -MP -MF .deps/libcommon_la-motif-in-common.Tpo -c motif-in-common.c -o libcommon_la-motif-in-common.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-common.Tpo .deps/libcommon_la-motif-in-common.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c -o libcommon_la-motif-in-dreme-xml.lo `test -f 'motif-in-dreme-xml.c' || echo './'`motif-in-dreme-xml.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c motif-in-dreme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-dreme-xml.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-dreme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-dreme-xml.Tpo -c motif-in-dreme-xml.c -o libcommon_la-motif-in-dreme-xml.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-dreme-xml.Tpo .deps/libcommon_la-motif-in-dreme-xml.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c -o libcommon_la-motif-in-meme-html.lo `test -f 'motif-in-meme-html.c' || echo './'`motif-in-meme-html.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c motif-in-meme-html.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-html.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-html.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-html.Tpo -c motif-in-meme-html.c -o libcommon_la-motif-in-meme-html.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-meme-html.Tpo .deps/libcommon_la-motif-in-meme-html.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c -o libcommon_la-motif-in-meme-json.lo `test -f 'motif-in-meme-json.c' || echo './'`motif-in-meme-json.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c motif-in-meme-json.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-json.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-json.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-json.Tpo -c motif-in-meme-json.c -o libcommon_la-motif-in-meme-json.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-meme-json.Tpo .deps/libcommon_la-motif-in-meme-json.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c -o libcommon_la-motif-in-meme-text.lo `test -f 'motif-in-meme-text.c' || echo './'`motif-in-meme-text.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c motif-in-meme-text.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-text.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-text.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-text.Tpo -c motif-in-meme-text.c -o libcommon_la-motif-in-meme-text.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-meme-text.Tpo .deps/libcommon_la-motif-in-meme-text.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c -o libcommon_la-motif-in-meme-xml.lo `test -f 'motif-in-meme-xml.c' || echo './'`motif-in-meme-xml.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c motif-in-meme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-xml.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-meme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-meme-xml.Tpo -c motif-in-meme-xml.c -o libcommon_la-motif-in-meme-xml.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-meme-xml.Tpo .deps/libcommon_la-motif-in-meme-xml.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-streme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-streme-xml.Tpo -c -o libcommon_la-motif-in-streme-xml.lo `test -f 'motif-in-streme-xml.c' || echo './'`motif-in-streme-xml.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-streme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-streme-xml.Tpo -c motif-in-streme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-streme-xml.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif-in-streme-xml.lo -MD -MP -MF .deps/libcommon_la-motif-in-streme-xml.Tpo -c motif-in-streme-xml.c -o libcommon_la-motif-in-streme-xml.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif-in-streme-xml.Tpo .deps/libcommon_la-motif-in-streme-xml.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c -o libcommon_la-motif_regexp.lo `test -f 'motif_regexp.c' || echo './'`motif_regexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c motif_regexp.c -fPIC -DPIC -o .libs/libcommon_la-motif_regexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motif_regexp.lo -MD -MP -MF .deps/libcommon_la-motif_regexp.Tpo -c motif_regexp.c -o libcommon_la-motif_regexp.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motif_regexp.Tpo .deps/libcommon_la-motif_regexp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motiph-scoring.lo -MD -MP -MF .deps/libcommon_la-motiph-scoring.Tpo -c -o libcommon_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motiph-scoring.lo -MD -MP -MF .deps/libcommon_la-motiph-scoring.Tpo -c motiph-scoring.c -fPIC -DPIC -o .libs/libcommon_la-motiph-scoring.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-motiph-scoring.lo -MD -MP -MF .deps/libcommon_la-motiph-scoring.Tpo -c motiph-scoring.c -o libcommon_la-motiph-scoring.o >/dev/null 2>&1 mv -f .deps/libcommon_la-motiph-scoring.Tpo .deps/libcommon_la-motiph-scoring.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mtwist.lo -MD -MP -MF .deps/libcommon_la-mtwist.Tpo -c -o libcommon_la-mtwist.lo `test -f 'mtwist.c' || echo './'`mtwist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mtwist.lo -MD -MP -MF .deps/libcommon_la-mtwist.Tpo -c mtwist.c -fPIC -DPIC -o .libs/libcommon_la-mtwist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-mtwist.lo -MD -MP -MF .deps/libcommon_la-mtwist.Tpo -c mtwist.c -o libcommon_la-mtwist.o >/dev/null 2>&1 mv -f .deps/libcommon_la-mtwist.Tpo .deps/libcommon_la-mtwist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-object-list.lo -MD -MP -MF .deps/libcommon_la-object-list.Tpo -c -o libcommon_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-object-list.lo -MD -MP -MF .deps/libcommon_la-object-list.Tpo -c object-list.c -fPIC -DPIC -o .libs/libcommon_la-object-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-object-list.lo -MD -MP -MF .deps/libcommon_la-object-list.Tpo -c object-list.c -o libcommon_la-object-list.o >/dev/null 2>&1 mv -f .deps/libcommon_la-object-list.Tpo .deps/libcommon_la-object-list.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-order.lo -MD -MP -MF .deps/libcommon_la-order.Tpo -c -o libcommon_la-order.lo `test -f 'order.c' || echo './'`order.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-order.lo -MD -MP -MF .deps/libcommon_la-order.Tpo -c order.c -fPIC -DPIC -o .libs/libcommon_la-order.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-order.lo -MD -MP -MF .deps/libcommon_la-order.Tpo -c order.c -o libcommon_la-order.o >/dev/null 2>&1 mv -f .deps/libcommon_la-order.Tpo .deps/libcommon_la-order.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c -o libcommon_la-data-block.lo `test -f 'data-block.c' || echo './'`data-block.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c data-block.c -fPIC -DPIC -o .libs/libcommon_la-data-block.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block.lo -MD -MP -MF .deps/libcommon_la-data-block.Tpo -c data-block.c -o libcommon_la-data-block.o >/dev/null 2>&1 mv -f .deps/libcommon_la-data-block.Tpo .deps/libcommon_la-data-block.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c -o libcommon_la-data-block-reader.lo `test -f 'data-block-reader.c' || echo './'`data-block-reader.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c data-block-reader.c -fPIC -DPIC -o .libs/libcommon_la-data-block-reader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-data-block-reader.lo -MD -MP -MF .deps/libcommon_la-data-block-reader.Tpo -c data-block-reader.c -o libcommon_la-data-block-reader.o >/dev/null 2>&1 mv -f .deps/libcommon_la-data-block-reader.Tpo .deps/libcommon_la-data-block-reader.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c -o libcommon_la-parser-message.lo `test -f 'parser-message.c' || echo './'`parser-message.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c parser-message.c -fPIC -DPIC -o .libs/libcommon_la-parser-message.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-parser-message.lo -MD -MP -MF .deps/libcommon_la-parser-message.Tpo -c parser-message.c -o libcommon_la-parser-message.o >/dev/null 2>&1 mv -f .deps/libcommon_la-parser-message.Tpo .deps/libcommon_la-parser-message.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c -o libcommon_la-prealigned-io.lo `test -f 'prealigned-io.c' || echo './'`prealigned-io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c prealigned-io.c -fPIC -DPIC -o .libs/libcommon_la-prealigned-io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prealigned-io.lo -MD -MP -MF .deps/libcommon_la-prealigned-io.Tpo -c prealigned-io.c -o libcommon_la-prealigned-io.o >/dev/null 2>&1 mv -f .deps/libcommon_la-prealigned-io.Tpo .deps/libcommon_la-prealigned-io.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-psp.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-psp.Tpo -c -o libcommon_la-prior-reader-from-psp.lo `test -f 'prior-reader-from-psp.c' || echo './'`prior-reader-from-psp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-psp.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-psp.Tpo -c prior-reader-from-psp.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-psp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-psp.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-psp.Tpo -c prior-reader-from-psp.c -o libcommon_la-prior-reader-from-psp.o >/dev/null 2>&1 mv -f .deps/libcommon_la-prior-reader-from-psp.Tpo .deps/libcommon_la-prior-reader-from-psp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-wig.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-wig.Tpo -c -o libcommon_la-prior-reader-from-wig.lo `test -f 'prior-reader-from-wig.c' || echo './'`prior-reader-from-wig.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-wig.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-wig.Tpo -c prior-reader-from-wig.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-wig.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-reader-from-wig.lo -MD -MP -MF .deps/libcommon_la-prior-reader-from-wig.Tpo -c prior-reader-from-wig.c -o libcommon_la-prior-reader-from-wig.o >/dev/null 2>&1 mv -f .deps/libcommon_la-prior-reader-from-wig.Tpo .deps/libcommon_la-prior-reader-from-wig.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-dist.lo -MD -MP -MF .deps/libcommon_la-prior-dist.Tpo -c -o libcommon_la-prior-dist.lo `test -f 'prior-dist.c' || echo './'`prior-dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-dist.lo -MD -MP -MF .deps/libcommon_la-prior-dist.Tpo -c prior-dist.c -fPIC -DPIC -o .libs/libcommon_la-prior-dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-prior-dist.lo -MD -MP -MF .deps/libcommon_la-prior-dist.Tpo -c prior-dist.c -o libcommon_la-prior-dist.o >/dev/null 2>&1 mv -f .deps/libcommon_la-prior-dist.Tpo .deps/libcommon_la-prior-dist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c -o libcommon_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c pssm.c -fPIC -DPIC -o .libs/libcommon_la-pssm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm.lo -MD -MP -MF .deps/libcommon_la-pssm.Tpo -c pssm.c -o libcommon_la-pssm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-pssm.Tpo .deps/libcommon_la-pssm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c -o libcommon_la-pssm-distr.lo `test -f 'pssm-distr.c' || echo './'`pssm-distr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c pssm-distr.c -fPIC -DPIC -o .libs/libcommon_la-pssm-distr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-pssm-distr.lo -MD -MP -MF .deps/libcommon_la-pssm-distr.Tpo -c pssm-distr.c -o libcommon_la-pssm-distr.o >/dev/null 2>&1 mv -f .deps/libcommon_la-pssm-distr.Tpo .deps/libcommon_la-pssm-distr.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-qvalue.lo -MD -MP -MF .deps/libcommon_la-qvalue.Tpo -c -o libcommon_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-qvalue.lo -MD -MP -MF .deps/libcommon_la-qvalue.Tpo -c qvalue.c -fPIC -DPIC -o .libs/libcommon_la-qvalue.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-qvalue.lo -MD -MP -MF .deps/libcommon_la-qvalue.Tpo -c qvalue.c -o libcommon_la-qvalue.o >/dev/null 2>&1 mv -f .deps/libcommon_la-qvalue.Tpo .deps/libcommon_la-qvalue.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-random-variate.lo -MD -MP -MF .deps/libcommon_la-random-variate.Tpo -c -o libcommon_la-random-variate.lo `test -f 'random-variate.c' || echo './'`random-variate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-random-variate.lo -MD -MP -MF .deps/libcommon_la-random-variate.Tpo -c random-variate.c -fPIC -DPIC -o .libs/libcommon_la-random-variate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-random-variate.lo -MD -MP -MF .deps/libcommon_la-random-variate.Tpo -c random-variate.c -o libcommon_la-random-variate.o >/dev/null 2>&1 mv -f .deps/libcommon_la-random-variate.Tpo .deps/libcommon_la-random-variate.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c -o libcommon_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c ranksum_test.c -fPIC -DPIC -o .libs/libcommon_la-ranksum_test.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ranksum_test.lo -MD -MP -MF .deps/libcommon_la-ranksum_test.Tpo -c ranksum_test.c -o libcommon_la-ranksum_test.o >/dev/null 2>&1 mv -f .deps/libcommon_la-ranksum_test.Tpo .deps/libcommon_la-ranksum_test.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c -o libcommon_la-rdb-matrix.lo `test -f 'rdb-matrix.c' || echo './'`rdb-matrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1 mv -f .deps/libcommon_la-rdb-matrix.Tpo .deps/libcommon_la-rdb-matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read-mhmm.lo -MD -MP -MF .deps/libcommon_la-read-mhmm.Tpo -c -o libcommon_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read-mhmm.lo -MD -MP -MF .deps/libcommon_la-read-mhmm.Tpo -c read-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-read-mhmm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read-mhmm.lo -MD -MP -MF .deps/libcommon_la-read-mhmm.Tpo -c read-mhmm.c -o libcommon_la-read-mhmm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-read-mhmm.Tpo .deps/libcommon_la-read-mhmm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c -o libcommon_la-read_sequence.lo `test -f 'read_sequence.c' || echo './'`read_sequence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -fPIC -DPIC -o .libs/libcommon_la-read_sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -o libcommon_la-read_sequence.o >/dev/null 2>&1 mv -f .deps/libcommon_la-read_sequence.Tpo .deps/libcommon_la-read_sequence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-red-black-tree.lo -MD -MP -MF .deps/libcommon_la-red-black-tree.Tpo -c -o libcommon_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-red-black-tree.lo -MD -MP -MF .deps/libcommon_la-red-black-tree.Tpo -c red-black-tree.c -fPIC -DPIC -o .libs/libcommon_la-red-black-tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-red-black-tree.lo -MD -MP -MF .deps/libcommon_la-red-black-tree.Tpo -c red-black-tree.c -o libcommon_la-red-black-tree.o >/dev/null 2>&1 mv -f .deps/libcommon_la-red-black-tree.Tpo .deps/libcommon_la-red-black-tree.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regex-utils.lo -MD -MP -MF .deps/libcommon_la-regex-utils.Tpo -c -o libcommon_la-regex-utils.lo `test -f 'regex-utils.c' || echo './'`regex-utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regex-utils.lo -MD -MP -MF .deps/libcommon_la-regex-utils.Tpo -c regex-utils.c -fPIC -DPIC -o .libs/libcommon_la-regex-utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regex-utils.lo -MD -MP -MF .deps/libcommon_la-regex-utils.Tpo -c regex-utils.c -o libcommon_la-regex-utils.o >/dev/null 2>&1 mv -f .deps/libcommon_la-regex-utils.Tpo .deps/libcommon_la-regex-utils.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c -o libcommon_la-regress.lo `test -f 'regress.c' || echo './'`regress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c regress.c -fPIC -DPIC -o .libs/libcommon_la-regress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-regress.lo -MD -MP -MF .deps/libcommon_la-regress.Tpo -c regress.c -o libcommon_la-regress.o >/dev/null 2>&1 mv -f .deps/libcommon_la-regress.Tpo .deps/libcommon_la-regress.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c -o libcommon_la-reservoir.lo `test -f 'reservoir.c' || echo './'`reservoir.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c reservoir.c -fPIC -DPIC -o .libs/libcommon_la-reservoir.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-reservoir.lo -MD -MP -MF .deps/libcommon_la-reservoir.Tpo -c reservoir.c -o libcommon_la-reservoir.o >/dev/null 2>&1 mv -f .deps/libcommon_la-reservoir.Tpo .deps/libcommon_la-reservoir.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c -o libcommon_la-sax-parser-utils.lo `test -f 'sax-parser-utils.c' || echo './'`sax-parser-utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c sax-parser-utils.c -fPIC -DPIC -o .libs/libcommon_la-sax-parser-utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-sax-parser-utils.lo -MD -MP -MF .deps/libcommon_la-sax-parser-utils.Tpo -c sax-parser-utils.c -o libcommon_la-sax-parser-utils.o >/dev/null 2>&1 mv -f .deps/libcommon_la-sax-parser-utils.Tpo .deps/libcommon_la-sax-parser-utils.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scanned-sequence.lo -MD -MP -MF .deps/libcommon_la-scanned-sequence.Tpo -c -o libcommon_la-scanned-sequence.lo `test -f 'scanned-sequence.c' || echo './'`scanned-sequence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scanned-sequence.lo -MD -MP -MF .deps/libcommon_la-scanned-sequence.Tpo -c scanned-sequence.c -fPIC -DPIC -o .libs/libcommon_la-scanned-sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scanned-sequence.lo -MD -MP -MF .deps/libcommon_la-scanned-sequence.Tpo -c scanned-sequence.c -o libcommon_la-scanned-sequence.o >/dev/null 2>&1 mv -f .deps/libcommon_la-scanned-sequence.Tpo .deps/libcommon_la-scanned-sequence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scored-sites.lo -MD -MP -MF .deps/libcommon_la-scored-sites.Tpo -c -o libcommon_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scored-sites.lo -MD -MP -MF .deps/libcommon_la-scored-sites.Tpo -c scored-sites.c -fPIC -DPIC -o .libs/libcommon_la-scored-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-scored-sites.lo -MD -MP -MF .deps/libcommon_la-scored-sites.Tpo -c scored-sites.c -o libcommon_la-scored-sites.o >/dev/null 2>&1 mv -f .deps/libcommon_la-scored-sites.Tpo .deps/libcommon_la-scored-sites.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq.lo -MD -MP -MF .deps/libcommon_la-seq.Tpo -c -o libcommon_la-seq.lo `test -f 'seq.c' || echo './'`seq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq.lo -MD -MP -MF .deps/libcommon_la-seq.Tpo -c seq.c -fPIC -DPIC -o .libs/libcommon_la-seq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq.lo -MD -MP -MF .deps/libcommon_la-seq.Tpo -c seq.c -o libcommon_la-seq.o >/dev/null 2>&1 mv -f .deps/libcommon_la-seq.Tpo .deps/libcommon_la-seq.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq-reader-from-fasta.lo -MD -MP -MF .deps/libcommon_la-seq-reader-from-fasta.Tpo -c -o libcommon_la-seq-reader-from-fasta.lo `test -f 'seq-reader-from-fasta.c' || echo './'`seq-reader-from-fasta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq-reader-from-fasta.lo -MD -MP -MF .deps/libcommon_la-seq-reader-from-fasta.Tpo -c seq-reader-from-fasta.c -fPIC -DPIC -o .libs/libcommon_la-seq-reader-from-fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-seq-reader-from-fasta.lo -MD -MP -MF .deps/libcommon_la-seq-reader-from-fasta.Tpo -c seq-reader-from-fasta.c -o libcommon_la-seq-reader-from-fasta.o >/dev/null 2>&1 mv -f .deps/libcommon_la-seq-reader-from-fasta.Tpo .deps/libcommon_la-seq-reader-from-fasta.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-simple-getopt.lo -MD -MP -MF .deps/libcommon_la-simple-getopt.Tpo -c -o libcommon_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-simple-getopt.lo -MD -MP -MF .deps/libcommon_la-simple-getopt.Tpo -c simple-getopt.c -fPIC -DPIC -o .libs/libcommon_la-simple-getopt.o simple-getopt.c: In function ‘buildmessage’: simple-getopt.c:346:17: warning: ‘strncat’ specified bound 4 equals source length [-Wstringop-overflow=] 346 | strncat(message, " is ", 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-simple-getopt.lo -MD -MP -MF .deps/libcommon_la-simple-getopt.Tpo -c simple-getopt.c -o libcommon_la-simple-getopt.o >/dev/null 2>&1 mv -f .deps/libcommon_la-simple-getopt.Tpo .deps/libcommon_la-simple-getopt.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-spearman-rank-correlation.lo -MD -MP -MF .deps/libcommon_la-spearman-rank-correlation.Tpo -c -o libcommon_la-spearman-rank-correlation.lo `test -f 'spearman-rank-correlation.c' || echo './'`spearman-rank-correlation.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-spearman-rank-correlation.lo -MD -MP -MF .deps/libcommon_la-spearman-rank-correlation.Tpo -c spearman-rank-correlation.c -fPIC -DPIC -o .libs/libcommon_la-spearman-rank-correlation.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-spearman-rank-correlation.lo -MD -MP -MF .deps/libcommon_la-spearman-rank-correlation.Tpo -c spearman-rank-correlation.c -o libcommon_la-spearman-rank-correlation.o >/dev/null 2>&1 mv -f .deps/libcommon_la-spearman-rank-correlation.Tpo .deps/libcommon_la-spearman-rank-correlation.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-sax.lo -MD -MP -MF .deps/libcommon_la-streme-sax.Tpo -c -o libcommon_la-streme-sax.lo `test -f 'streme-sax.c' || echo './'`streme-sax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-sax.lo -MD -MP -MF .deps/libcommon_la-streme-sax.Tpo -c streme-sax.c -fPIC -DPIC -o .libs/libcommon_la-streme-sax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-sax.lo -MD -MP -MF .deps/libcommon_la-streme-sax.Tpo -c streme-sax.c -o libcommon_la-streme-sax.o >/dev/null 2>&1 mv -f .deps/libcommon_la-streme-sax.Tpo .deps/libcommon_la-streme-sax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-utils.lo -MD -MP -MF .deps/libcommon_la-streme-utils.Tpo -c -o libcommon_la-streme-utils.lo `test -f 'streme-utils.c' || echo './'`streme-utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-utils.lo -MD -MP -MF .deps/libcommon_la-streme-utils.Tpo -c streme-utils.c -fPIC -DPIC -o .libs/libcommon_la-streme-utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-streme-utils.lo -MD -MP -MF .deps/libcommon_la-streme-utils.Tpo -c streme-utils.c -o libcommon_la-streme-utils.o >/dev/null 2>&1 mv -f .deps/libcommon_la-streme-utils.Tpo .deps/libcommon_la-streme-utils.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-builder.lo -MD -MP -MF .deps/libcommon_la-string-builder.Tpo -c -o libcommon_la-string-builder.lo `test -f 'string-builder.c' || echo './'`string-builder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-builder.lo -MD -MP -MF .deps/libcommon_la-string-builder.Tpo -c string-builder.c -fPIC -DPIC -o .libs/libcommon_la-string-builder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-builder.lo -MD -MP -MF .deps/libcommon_la-string-builder.Tpo -c string-builder.c -o libcommon_la-string-builder.o >/dev/null 2>&1 mv -f .deps/libcommon_la-string-builder.Tpo .deps/libcommon_la-string-builder.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-list.lo -MD -MP -MF .deps/libcommon_la-string-list.Tpo -c -o libcommon_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-list.lo -MD -MP -MF .deps/libcommon_la-string-list.Tpo -c string-list.c -fPIC -DPIC -o .libs/libcommon_la-string-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-list.lo -MD -MP -MF .deps/libcommon_la-string-list.Tpo -c string-list.c -o libcommon_la-string-list.o >/dev/null 2>&1 mv -f .deps/libcommon_la-string-list.Tpo .deps/libcommon_la-string-list.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c -o libcommon_la-string-match.lo `test -f 'string-match.c' || echo './'`string-match.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c string-match.c -fPIC -DPIC -o .libs/libcommon_la-string-match.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-string-match.lo -MD -MP -MF .deps/libcommon_la-string-match.Tpo -c string-match.c -o libcommon_la-string-match.o >/dev/null 2>&1 mv -f .deps/libcommon_la-string-match.Tpo .deps/libcommon_la-string-match.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c -o libcommon_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c subst-matrix.c -fPIC -DPIC -o .libs/libcommon_la-subst-matrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-subst-matrix.lo -MD -MP -MF .deps/libcommon_la-subst-matrix.Tpo -c subst-matrix.c -o libcommon_la-subst-matrix.o >/dev/null 2>&1 mv -f .deps/libcommon_la-subst-matrix.Tpo .deps/libcommon_la-subst-matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c -o libcommon_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c substmatrix-table.c -fPIC -DPIC -o .libs/libcommon_la-substmatrix-table.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-substmatrix-table.lo -MD -MP -MF .deps/libcommon_la-substmatrix-table.Tpo -c substmatrix-table.c -o libcommon_la-substmatrix-table.o >/dev/null 2>&1 mv -f .deps/libcommon_la-substmatrix-table.Tpo .deps/libcommon_la-substmatrix-table.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c -o libcommon_la-transfac.lo `test -f 'transfac.c' || echo './'`transfac.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c transfac.c -fPIC -DPIC -o .libs/libcommon_la-transfac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-transfac.lo -MD -MP -MF .deps/libcommon_la-transfac.Tpo -c transfac.c -o libcommon_la-transfac.o >/dev/null 2>&1 mv -f .deps/libcommon_la-transfac.Tpo .deps/libcommon_la-transfac.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c -o libcommon_la-tree.lo `test -f 'tree.c' || echo './'`tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c tree.c -fPIC -DPIC -o .libs/libcommon_la-tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-tree.lo -MD -MP -MF .deps/libcommon_la-tree.Tpo -c tree.c -o libcommon_la-tree.o >/dev/null 2>&1 mv -f .deps/libcommon_la-tree.Tpo .deps/libcommon_la-tree.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1 mv -f .deps/libcommon_la-utils.Tpo .deps/libcommon_la-utils.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ushuffle.lo -MD -MP -MF .deps/libcommon_la-ushuffle.Tpo -c -o libcommon_la-ushuffle.lo `test -f 'ushuffle.c' || echo './'`ushuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ushuffle.lo -MD -MP -MF .deps/libcommon_la-ushuffle.Tpo -c ushuffle.c -fPIC -DPIC -o .libs/libcommon_la-ushuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-ushuffle.lo -MD -MP -MF .deps/libcommon_la-ushuffle.Tpo -c ushuffle.c -o libcommon_la-ushuffle.o >/dev/null 2>&1 mv -f .deps/libcommon_la-ushuffle.Tpo .deps/libcommon_la-ushuffle.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c -o libcommon_la-wiggle-reader.lo `test -f 'wiggle-reader.c' || echo './'`wiggle-reader.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c wiggle-reader.c -fPIC -DPIC -o .libs/libcommon_la-wiggle-reader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-wiggle-reader.lo -MD -MP -MF .deps/libcommon_la-wiggle-reader.Tpo -c wiggle-reader.c -o libcommon_la-wiggle-reader.o >/dev/null 2>&1 mv -f .deps/libcommon_la-wiggle-reader.Tpo .deps/libcommon_la-wiggle-reader.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c -o libcommon_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c write-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-write-mhmm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-write-mhmm.lo -MD -MP -MF .deps/libcommon_la-write-mhmm.Tpo -c write-mhmm.c -o libcommon_la-write-mhmm.o >/dev/null 2>&1 mv -f .deps/libcommon_la-write-mhmm.Tpo .deps/libcommon_la-write-mhmm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c -o libcommon_la-xlate-in.lo `test -f 'xlate-in.c' || echo './'`xlate-in.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c xlate-in.c -fPIC -DPIC -o .libs/libcommon_la-xlate-in.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xlate-in.lo -MD -MP -MF .deps/libcommon_la-xlate-in.Tpo -c xlate-in.c -o libcommon_la-xlate-in.o >/dev/null 2>&1 mv -f .deps/libcommon_la-xlate-in.Tpo .deps/libcommon_la-xlate-in.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c -o libcommon_la-xml-out.lo `test -f 'xml-out.c' || echo './'`xml-out.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c xml-out.c -fPIC -DPIC -o .libs/libcommon_la-xml-out.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-out.lo -MD -MP -MF .deps/libcommon_la-xml-out.Tpo -c xml-out.c -o libcommon_la-xml-out.o >/dev/null 2>&1 mv -f .deps/libcommon_la-xml-out.Tpo .deps/libcommon_la-xml-out.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -fPIC -DPIC -o .libs/libcommon_la-xml-util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1 mv -f .deps/libcommon_la-xml-util.Tpo .deps/libcommon_la-xml-util.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-inputmultiseq.lo -MD -MP -MF .deps/libcommon_la-inputmultiseq.Tpo -c -o libcommon_la-inputmultiseq.lo `test -f 'inputmultiseq.c' || echo './'`inputmultiseq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-inputmultiseq.lo -MD -MP -MF .deps/libcommon_la-inputmultiseq.Tpo -c inputmultiseq.c -fPIC -DPIC -o .libs/libcommon_la-inputmultiseq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-inputmultiseq.lo -MD -MP -MF .deps/libcommon_la-inputmultiseq.Tpo -c inputmultiseq.c -o libcommon_la-inputmultiseq.o >/dev/null 2>&1 mv -f .deps/libcommon_la-inputmultiseq.Tpo .deps/libcommon_la-inputmultiseq.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_access.lo -MD -MP -MF .deps/libcommon_la-st_access.Tpo -c -o libcommon_la-st_access.lo `test -f 'st_access.c' || echo './'`st_access.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_access.lo -MD -MP -MF .deps/libcommon_la-st_access.Tpo -c st_access.c -fPIC -DPIC -o .libs/libcommon_la-st_access.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_access.lo -MD -MP -MF .deps/libcommon_la-st_access.Tpo -c st_access.c -o libcommon_la-st_access.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_access.Tpo .deps/libcommon_la-st_access.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_construct.lo -MD -MP -MF .deps/libcommon_la-st_construct.Tpo -c -o libcommon_la-st_construct.lo `test -f 'st_construct.c' || echo './'`st_construct.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_construct.lo -MD -MP -MF .deps/libcommon_la-st_construct.Tpo -c st_construct.c -fPIC -DPIC -o .libs/libcommon_la-st_construct.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_construct.lo -MD -MP -MF .deps/libcommon_la-st_construct.Tpo -c st_construct.c -o libcommon_la-st_construct.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_construct.Tpo .deps/libcommon_la-st_construct.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_dfs.lo -MD -MP -MF .deps/libcommon_la-st_dfs.Tpo -c -o libcommon_la-st_dfs.lo `test -f 'st_dfs.c' || echo './'`st_dfs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_dfs.lo -MD -MP -MF .deps/libcommon_la-st_dfs.Tpo -c st_dfs.c -fPIC -DPIC -o .libs/libcommon_la-st_dfs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_dfs.lo -MD -MP -MF .deps/libcommon_la-st_dfs.Tpo -c st_dfs.c -o libcommon_la-st_dfs.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_dfs.Tpo .deps/libcommon_la-st_dfs.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_mapfile.lo -MD -MP -MF .deps/libcommon_la-st_mapfile.Tpo -c -o libcommon_la-st_mapfile.lo `test -f 'st_mapfile.c' || echo './'`st_mapfile.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_mapfile.lo -MD -MP -MF .deps/libcommon_la-st_mapfile.Tpo -c st_mapfile.c -fPIC -DPIC -o .libs/libcommon_la-st_mapfile.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_mapfile.lo -MD -MP -MF .deps/libcommon_la-st_mapfile.Tpo -c st_mapfile.c -o libcommon_la-st_mapfile.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_mapfile.Tpo .deps/libcommon_la-st_mapfile.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_seterror.lo -MD -MP -MF .deps/libcommon_la-st_seterror.Tpo -c -o libcommon_la-st_seterror.lo `test -f 'st_seterror.c' || echo './'`st_seterror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_seterror.lo -MD -MP -MF .deps/libcommon_la-st_seterror.Tpo -c st_seterror.c -fPIC -DPIC -o .libs/libcommon_la-st_seterror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_seterror.lo -MD -MP -MF .deps/libcommon_la-st_seterror.Tpo -c st_seterror.c -o libcommon_la-st_seterror.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_seterror.Tpo .deps/libcommon_la-st_seterror.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_space.lo -MD -MP -MF .deps/libcommon_la-st_space.Tpo -c -o libcommon_la-st_space.lo `test -f 'st_space.c' || echo './'`st_space.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_space.lo -MD -MP -MF .deps/libcommon_la-st_space.Tpo -c st_space.c -fPIC -DPIC -o .libs/libcommon_la-st_space.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-st_space.lo -MD -MP -MF .deps/libcommon_la-st_space.Tpo -c st_space.c -o libcommon_la-st_space.o >/dev/null 2>&1 mv -f .deps/libcommon_la-st_space.Tpo .deps/libcommon_la-st_space.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-banner.lo -MD -MP -MF .deps/libcommon_la-banner.Tpo -c -o libcommon_la-banner.lo `test -f 'banner.c' || echo './'`banner.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-banner.lo -MD -MP -MF .deps/libcommon_la-banner.Tpo -c banner.c -fPIC -DPIC -o .libs/libcommon_la-banner.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -MT libcommon_la-banner.lo -MD -MP -MF .deps/libcommon_la-banner.Tpo -c banner.c -o libcommon_la-banner.o >/dev/null 2>&1 mv -f .deps/libcommon_la-banner.Tpo .deps/libcommon_la-banner.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -DSTREEHUGE -O2 -march=i586 -mtune=i686 -std=gnu89 -o libcommon.la libcommon_la-alignment.lo libcommon_la-alph-in.lo libcommon_la-alphabet.lo libcommon_la-array.lo libcommon_la-array-list.lo libcommon_la-bates.lo libcommon_la-bed.lo libcommon_la-bed-io.lo libcommon_la-binary-search.lo libcommon_la-binomial.lo libcommon_la-build-hmm.lo libcommon_la-buffer.lo libcommon_la-ceqlogo.lo libcommon_la-cisml.lo libcommon_la-cisml-sax.lo libcommon_la-clustalw-io.lo libcommon_la-dp.lo libcommon_la-dreme-sax.lo libcommon_la-eps2png.lo libcommon_la-empirical-qvalue.lo libcommon_la-evomodel.lo libcommon_la-fasta-io.lo libcommon_la-fasta-get-markov.lo libcommon_la-fitevd.lo libcommon_la-gendb.lo libcommon_la-gtf.lo libcommon_la-gtf-io.lo libcommon_la-hash_table.lo libcommon_la-heap.lo libcommon_la-html-data.lo libcommon_la-html-monolith.lo libcommon_la-io.lo libcommon_la-json-checker.lo libcommon_la-json-reader.lo libcommon_la-json-writer.lo libcommon_la-karlin.lo libcommon_la-linked-list.lo libcommon_la-log-hmm.lo libcommon_la-log_erfc.lo libcommon_la-logodds.lo libcommon_la-mast-util.lo libcommon_la-match.lo libcommon_la-matrix.lo libcommon_la-mcast-match.lo libcommon_la-meme-sax.lo libcommon_la-metameme.lo libcommon_la-mhmm.lo libcommon_la-mhmms.lo libcommon_la-mhmmscan.lo libcommon_la-mhmm-state.lo libcommon_la-momo-algorithm.lo libcommon_la-momo-input.lo libcommon_la-momo-modl.lo libcommon_la-momo-motifx.lo libcommon_la-momo-output.lo libcommon_la-momo-simple.lo libcommon_la-motif.lo libcommon_la-motif-db.lo libcommon_la-motif-in.lo libcommon_la-motif-in-common.lo libcommon_la-motif-in-dreme-xml.lo libcommon_la-motif-in-meme-html.lo libcommon_la-motif-in-meme-json.lo libcommon_la-motif-in-meme-text.lo libcommon_la-motif-in-meme-xml.lo libcommon_la-motif-in-streme-xml.lo libcommon_la-motif_regexp.lo libcommon_la-motiph-scoring.lo libcommon_la-mtwist.lo libcommon_la-object-list.lo libcommon_la-order.lo libcommon_la-data-block.lo libcommon_la-data-block-reader.lo libcommon_la-parser-message.lo libcommon_la-prealigned-io.lo libcommon_la-prior-reader-from-psp.lo libcommon_la-prior-reader-from-wig.lo libcommon_la-prior-dist.lo libcommon_la-pssm.lo libcommon_la-pssm-distr.lo libcommon_la-qvalue.lo libcommon_la-random-variate.lo libcommon_la-ranksum_test.lo libcommon_la-rdb-matrix.lo libcommon_la-read-mhmm.lo libcommon_la-read_sequence.lo libcommon_la-red-black-tree.lo libcommon_la-regex-utils.lo libcommon_la-regress.lo libcommon_la-reservoir.lo libcommon_la-sax-parser-utils.lo libcommon_la-scanned-sequence.lo libcommon_la-scored-sites.lo libcommon_la-seq.lo libcommon_la-seq-reader-from-fasta.lo libcommon_la-simple-getopt.lo libcommon_la-spearman-rank-correlation.lo libcommon_la-streme-sax.lo libcommon_la-streme-utils.lo libcommon_la-string-builder.lo libcommon_la-string-list.lo libcommon_la-string-match.lo libcommon_la-subst-matrix.lo libcommon_la-substmatrix-table.lo libcommon_la-transfac.lo libcommon_la-tree.lo libcommon_la-utils.lo libcommon_la-ushuffle.lo libcommon_la-wiggle-reader.lo libcommon_la-write-mhmm.lo libcommon_la-xlate-in.lo libcommon_la-xml-out.lo libcommon_la-xml-util.lo libcommon_la-inputmultiseq.lo libcommon_la-st_access.lo libcommon_la-st_construct.lo libcommon_la-st_dfs.lo libcommon_la-st_mapfile.lo libcommon_la-st_seterror.lo libcommon_la-st_space.lo libcommon_la-banner.lo -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lm -lmpi -lz -lm libtool: link: ar cru .libs/libcommon.a .libs/libcommon_la-alignment.o .libs/libcommon_la-alph-in.o .libs/libcommon_la-alphabet.o .libs/libcommon_la-array.o .libs/libcommon_la-array-list.o .libs/libcommon_la-bates.o .libs/libcommon_la-bed.o .libs/libcommon_la-bed-io.o .libs/libcommon_la-binary-search.o .libs/libcommon_la-binomial.o .libs/libcommon_la-build-hmm.o .libs/libcommon_la-buffer.o .libs/libcommon_la-ceqlogo.o .libs/libcommon_la-cisml.o .libs/libcommon_la-cisml-sax.o .libs/libcommon_la-clustalw-io.o .libs/libcommon_la-dp.o .libs/libcommon_la-dreme-sax.o .libs/libcommon_la-eps2png.o .libs/libcommon_la-empirical-qvalue.o .libs/libcommon_la-evomodel.o .libs/libcommon_la-fasta-io.o .libs/libcommon_la-fasta-get-markov.o .libs/libcommon_la-fitevd.o .libs/libcommon_la-gendb.o .libs/libcommon_la-gtf.o .libs/libcommon_la-gtf-io.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-heap.o .libs/libcommon_la-html-data.o .libs/libcommon_la-html-monolith.o .libs/libcommon_la-io.o .libs/libcommon_la-json-checker.o .libs/libcommon_la-json-reader.o .libs/libcommon_la-json-writer.o .libs/libcommon_la-karlin.o .libs/libcommon_la-linked-list.o .libs/libcommon_la-log-hmm.o .libs/libcommon_la-log_erfc.o .libs/libcommon_la-logodds.o .libs/libcommon_la-mast-util.o .libs/libcommon_la-match.o .libs/libcommon_la-matrix.o .libs/libcommon_la-mcast-match.o .libs/libcommon_la-meme-sax.o .libs/libcommon_la-metameme.o .libs/libcommon_la-mhmm.o .libs/libcommon_la-mhmms.o .libs/libcommon_la-mhmmscan.o .libs/libcommon_la-mhmm-state.o .libs/libcommon_la-momo-algorithm.o .libs/libcommon_la-momo-input.o .libs/libcommon_la-momo-modl.o .libs/libcommon_la-momo-motifx.o .libs/libcommon_la-momo-output.o .libs/libcommon_la-momo-simple.o .libs/libcommon_la-motif.o .libs/libcommon_la-motif-db.o .libs/libcommon_la-motif-in.o .libs/libcommon_la-motif-in-common.o .libs/libcommon_la-motif-in-dreme-xml.o .libs/libcommon_la-motif-in-meme-html.o .libs/libcommon_la-motif-in-meme-json.o .libs/libcommon_la-motif-in-meme-text.o .libs/libcommon_la-motif-in-meme-xml.o .libs/libcommon_la-motif-in-streme-xml.o .libs/libcommon_la-motif_regexp.o .libs/libcommon_la-motiph-scoring.o .libs/libcommon_la-mtwist.o .libs/libcommon_la-object-list.o .libs/libcommon_la-order.o .libs/libcommon_la-data-block.o .libs/libcommon_la-data-block-reader.o .libs/libcommon_la-parser-message.o .libs/libcommon_la-prealigned-io.o .libs/libcommon_la-prior-reader-from-psp.o .libs/libcommon_la-prior-reader-from-wig.o .libs/libcommon_la-prior-dist.o .libs/libcommon_la-pssm.o .libs/libcommon_la-pssm-distr.o .libs/libcommon_la-qvalue.o .libs/libcommon_la-random-variate.o .libs/libcommon_la-ranksum_test.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read-mhmm.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-red-black-tree.o .libs/libcommon_la-regex-utils.o .libs/libcommon_la-regress.o .libs/libcommon_la-reservoir.o .libs/libcommon_la-sax-parser-utils.o .libs/libcommon_la-scanned-sequence.o .libs/libcommon_la-scored-sites.o .libs/libcommon_la-seq.o .libs/libcommon_la-seq-reader-from-fasta.o .libs/libcommon_la-simple-getopt.o .libs/libcommon_la-spearman-rank-correlation.o .libs/libcommon_la-streme-sax.o .libs/libcommon_la-streme-utils.o .libs/libcommon_la-string-builder.o .libs/libcommon_la-string-list.o .libs/libcommon_la-string-match.o .libs/libcommon_la-subst-matrix.o .libs/libcommon_la-substmatrix-table.o .libs/libcommon_la-transfac.o .libs/libcommon_la-tree.o .libs/libcommon_la-utils.o .libs/libcommon_la-ushuffle.o .libs/libcommon_la-wiggle-reader.o .libs/libcommon_la-write-mhmm.o .libs/libcommon_la-xlate-in.o .libs/libcommon_la-xml-out.o .libs/libcommon_la-xml-util.o .libs/libcommon_la-inputmultiseq.o .libs/libcommon_la-st_access.o .libs/libcommon_la-st_construct.o .libs/libcommon_la-st_dfs.o .libs/libcommon_la-st_mapfile.o .libs/libcommon_la-st_seterror.o .libs/libcommon_la-st_space.o .libs/libcommon_la-banner.o libtool: link: ranlib .libs/libcommon.a libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT centrimo-centrimo.o -MD -MP -MF .deps/centrimo-centrimo.Tpo -c -o centrimo-centrimo.o `test -f 'centrimo.c' || echo './'`centrimo.c mv -f .deps/centrimo-centrimo.Tpo .deps/centrimo-centrimo.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT centrimo-fisher_exact.o -MD -MP -MF .deps/centrimo-fisher_exact.Tpo -c -o centrimo-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/centrimo-fisher_exact.Tpo .deps/centrimo-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o centrimo centrimo-centrimo.o centrimo-fisher_exact.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o centrimo centrimo-centrimo.o centrimo-fisher_exact.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT enr-enr.o -MD -MP -MF .deps/enr-enr.Tpo -c -o enr-enr.o `test -f 'enr.c' || echo './'`enr.c mv -f .deps/enr-enr.Tpo .deps/enr-enr.Po gcc -DHAVE_CONFIG_H -I. -I.. -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT enr-fisher_exact.o -MD -MP -MF .deps/enr-fisher_exact.Tpo -c -o enr-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/enr-fisher_exact.Tpo .deps/enr-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o enr enr-enr.o enr-fisher_exact.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o enr enr-enr.o enr-fisher_exact.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fimo-fimo.o -MD -MP -MF .deps/fimo-fimo.Tpo -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c mv -f .deps/fimo-fimo.Tpo .deps/fimo-fimo.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fimo-fimo-output.o -MD -MP -MF .deps/fimo-fimo-output.Tpo -c -o fimo-fimo-output.o `test -f 'fimo-output.c' || echo './'`fimo-output.c mv -f .deps/fimo-fimo-output.Tpo .deps/fimo-fimo-output.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o fimo fimo-fimo.o fimo-fimo-output.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o fimo fimo-fimo.o fimo-fimo-output.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_alphabet.o -MD -MP -MF .deps/glam2-glam2_alphabet.Tpo -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c mv -f .deps/glam2-glam2_alphabet.Tpo .deps/glam2-glam2_alphabet.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_args.o -MD -MP -MF .deps/glam2-glam2_args.Tpo -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c mv -f .deps/glam2-glam2_args.Tpo .deps/glam2-glam2_args.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_column_sample.o -MD -MP -MF .deps/glam2-glam2_column_sample.Tpo -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c mv -f .deps/glam2-glam2_column_sample.Tpo .deps/glam2-glam2_column_sample.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_dirichlet.o -MD -MP -MF .deps/glam2-glam2_dirichlet.Tpo -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c mv -f .deps/glam2-glam2_dirichlet.Tpo .deps/glam2-glam2_dirichlet.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_dna_prior.o -MD -MP -MF .deps/glam2-glam2_dna_prior.Tpo -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c mv -f .deps/glam2-glam2_dna_prior.Tpo .deps/glam2-glam2_dna_prior.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_fasta.o -MD -MP -MF .deps/glam2-glam2_fasta.Tpo -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2-glam2_fasta.Tpo .deps/glam2-glam2_fasta.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_glam2.o -MD -MP -MF .deps/glam2-glam2_glam2.Tpo -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c mv -f .deps/glam2-glam2_glam2.Tpo .deps/glam2-glam2_glam2.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_glam2_aln.o -MD -MP -MF .deps/glam2-glam2_glam2_aln.Tpo -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c mv -f .deps/glam2-glam2_glam2_aln.Tpo .deps/glam2-glam2_glam2_aln.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_init.o -MD -MP -MF .deps/glam2-glam2_init.Tpo -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c mv -f .deps/glam2-glam2_init.Tpo .deps/glam2-glam2_init.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_output.o -MD -MP -MF .deps/glam2-glam2_output.Tpo -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c mv -f .deps/glam2-glam2_output.Tpo .deps/glam2-glam2_output.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2-glam2_recode3_20comp.Tpo -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c mv -f .deps/glam2-glam2_recode3_20comp.Tpo .deps/glam2-glam2_recode3_20comp.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_site_sample.o -MD -MP -MF .deps/glam2-glam2_site_sample.Tpo -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c mv -f .deps/glam2-glam2_site_sample.Tpo .deps/glam2-glam2_site_sample.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2-glam2_util.o -MD -MP -MF .deps/glam2-glam2_util.Tpo -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2-glam2_util.Tpo .deps/glam2-glam2_util.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_alignment.o -MD -MP -MF .deps/glam2scan-glam2_alignment.Tpo -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c mv -f .deps/glam2scan-glam2_alignment.Tpo .deps/glam2scan-glam2_alignment.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_alphabet.o -MD -MP -MF .deps/glam2scan-glam2_alphabet.Tpo -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c mv -f .deps/glam2scan-glam2_alphabet.Tpo .deps/glam2scan-glam2_alphabet.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_dna_prior.o -MD -MP -MF .deps/glam2scan-glam2_dna_prior.Tpo -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c mv -f .deps/glam2scan-glam2_dna_prior.Tpo .deps/glam2scan-glam2_dna_prior.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_fasta.o -MD -MP -MF .deps/glam2scan-glam2_fasta.Tpo -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2scan-glam2_fasta.Tpo .deps/glam2scan-glam2_fasta.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_dirichlet.o -MD -MP -MF .deps/glam2scan-glam2_dirichlet.Tpo -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c mv -f .deps/glam2scan-glam2_dirichlet.Tpo .deps/glam2scan-glam2_dirichlet.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_heap.o -MD -MP -MF .deps/glam2scan-glam2_heap.Tpo -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c mv -f .deps/glam2scan-glam2_heap.Tpo .deps/glam2scan-glam2_heap.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_motif.o -MD -MP -MF .deps/glam2scan-glam2_motif.Tpo -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c mv -f .deps/glam2scan-glam2_motif.Tpo .deps/glam2scan-glam2_motif.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_scan.o -MD -MP -MF .deps/glam2scan-glam2_scan.Tpo -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c mv -f .deps/glam2scan-glam2_scan.Tpo .deps/glam2scan-glam2_scan.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_scan_args.o -MD -MP -MF .deps/glam2scan-glam2_scan_args.Tpo -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c mv -f .deps/glam2scan-glam2_scan_args.Tpo .deps/glam2scan-glam2_scan_args.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_scan_init.o -MD -MP -MF .deps/glam2scan-glam2_scan_init.Tpo -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c mv -f .deps/glam2scan-glam2_scan_init.Tpo .deps/glam2scan-glam2_scan_init.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_scan_output.o -MD -MP -MF .deps/glam2scan-glam2_scan_output.Tpo -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c mv -f .deps/glam2scan-glam2_scan_output.Tpo .deps/glam2scan-glam2_scan_output.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2scan-glam2_recode3_20comp.Tpo -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c mv -f .deps/glam2scan-glam2_recode3_20comp.Tpo .deps/glam2scan-glam2_recode3_20comp.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2scan-glam2_util.o -MD -MP -MF .deps/glam2scan-glam2_util.Tpo -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2scan-glam2_util.Tpo .deps/glam2scan-glam2_util.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo-gomo.o -MD -MP -MF .deps/gomo-gomo.Tpo -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c mv -f .deps/gomo-gomo.Tpo .deps/gomo-gomo.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo-gomo_highlight.o -MD -MP -MF .deps/gomo-gomo_highlight.Tpo -c -o gomo-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c mv -f .deps/gomo-gomo_highlight.Tpo .deps/gomo-gomo_highlight.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo-merger.o -MD -MP -MF .deps/gomo-merger.Tpo -c -o gomo-merger.o `test -f 'merger.c' || echo './'`merger.c mv -f .deps/gomo-merger.Tpo .deps/gomo-merger.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo-ranksum_test.o -MD -MP -MF .deps/gomo-ranksum_test.Tpo -c -o gomo-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c mv -f .deps/gomo-ranksum_test.Tpo .deps/gomo-ranksum_test.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo-read_csv.o -MD -MP -MF .deps/gomo-read_csv.Tpo -c -o gomo-read_csv.o `test -f 'read_csv.c' || echo './'`read_csv.c mv -f .deps/gomo-read_csv.Tpo .deps/gomo-read_csv.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT mast-diagram.o -MD -MP -MF .deps/mast-diagram.Tpo -c -o mast-diagram.o `test -f 'diagram.c' || echo './'`diagram.c mv -f .deps/mast-diagram.Tpo .deps/mast-diagram.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT mast-mast.o -MD -MP -MF .deps/mast-mast.Tpo -c -o mast-mast.o `test -f 'mast.c' || echo './'`mast.c mv -f .deps/mast-mast.Tpo .deps/mast-mast.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o mast mast-diagram.o mast-mast.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o mast mast-diagram.o mast-mast.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT mcast-mcast.o -MD -MP -MF .deps/mcast-mcast.Tpo -c -o mcast-mcast.o `test -f 'mcast.c' || echo './'`mcast.c mv -f .deps/mcast-mcast.Tpo .deps/mcast-mcast.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o mcast mcast-mcast.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o mcast mcast-mcast.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT momo-momo.o -MD -MP -MF .deps/momo-momo.Tpo -c -o momo-momo.o `test -f 'momo.c' || echo './'`momo.c mv -f .deps/momo-momo.Tpo .deps/momo-momo.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT momo-fisher_exact.o -MD -MP -MF .deps/momo-fisher_exact.Tpo -c -o momo-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/momo-fisher_exact.Tpo .deps/momo-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o momo momo-momo.o momo-fisher_exact.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o momo momo-momo.o momo-fisher_exact.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT streme-streme.o -MD -MP -MF .deps/streme-streme.Tpo -c -o streme-streme.o `test -f 'streme.c' || echo './'`streme.c mv -f .deps/streme-streme.Tpo .deps/streme-streme.Po gcc -DHAVE_CONFIG_H -I. -I.. -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT streme-fisher_exact.o -MD -MP -MF .deps/streme-fisher_exact.Tpo -c -o streme-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/streme-fisher_exact.Tpo .deps/streme-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o streme streme-streme.o streme-fisher_exact.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -DSTREEHUGE -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o streme streme-streme.o streme-fisher_exact.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT spamo-cisml-sax.o -MD -MP -MF .deps/spamo-cisml-sax.Tpo -c -o spamo-cisml-sax.o `test -f 'cisml-sax.c' || echo './'`cisml-sax.c mv -f .deps/spamo-cisml-sax.Tpo .deps/spamo-cisml-sax.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT spamo-spamo.o -MD -MP -MF .deps/spamo-spamo.Tpo -c -o spamo-spamo.o `test -f 'spamo.c' || echo './'`spamo.c mv -f .deps/spamo-spamo.Tpo .deps/spamo-spamo.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT spamo-spamo-matches.o -MD -MP -MF .deps/spamo-spamo-matches.Tpo -c -o spamo-spamo-matches.o `test -f 'spamo-matches.c' || echo './'`spamo-matches.c mv -f .deps/spamo-spamo-matches.Tpo .deps/spamo-spamo-matches.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT spamo-spamo-output.o -MD -MP -MF .deps/spamo-spamo-output.Tpo -c -o spamo-spamo-output.o `test -f 'spamo-output.c' || echo './'`spamo-output.c mv -f .deps/spamo-spamo-output.Tpo .deps/spamo-spamo-output.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT spamo-spamo-scan.o -MD -MP -MF .deps/spamo-spamo-scan.Tpo -c -o spamo-spamo-scan.o `test -f 'spamo-scan.c' || echo './'`spamo-scan.c mv -f .deps/spamo-spamo-scan.Tpo .deps/spamo-spamo-scan.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT tgene-tgene.o -MD -MP -MF .deps/tgene-tgene.Tpo -c -o tgene-tgene.o `test -f 'tgene.c' || echo './'`tgene.c mv -f .deps/tgene-tgene.Tpo .deps/tgene-tgene.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o tgene tgene-tgene.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o tgene tgene-tgene.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT tomtom-tomtom.o -MD -MP -MF .deps/tomtom-tomtom.Tpo -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c mv -f .deps/tomtom-tomtom.Tpo .deps/tomtom-tomtom.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o tomtom tomtom-tomtom.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o tomtom tomtom-tomtom.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT alphtype-alphtype.o -MD -MP -MF .deps/alphtype-alphtype.Tpo -c -o alphtype-alphtype.o `test -f 'alphtype.c' || echo './'`alphtype.c mv -f .deps/alphtype-alphtype.Tpo .deps/alphtype-alphtype.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o alphtype alphtype-alphtype.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o alphtype alphtype-alphtype.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ama-ama.o -MD -MP -MF .deps/ama-ama.Tpo -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c mv -f .deps/ama-ama.Tpo .deps/ama-ama.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ama ama-ama.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ama ama-ama.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ceqlogo-ceqlogo.o -MD -MP -MF .deps/ceqlogo-ceqlogo.Tpo -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c mv -f .deps/ceqlogo-ceqlogo.Tpo .deps/ceqlogo-ceqlogo.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DCL_MAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ceqlogo ceqlogo-ceqlogo.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -DCL_MAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ceqlogo ceqlogo-ceqlogo.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT clustalw2fasta-clustalw2fasta.o -MD -MP -MF .deps/clustalw2fasta-clustalw2fasta.Tpo -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c mv -f .deps/clustalw2fasta-clustalw2fasta.Tpo .deps/clustalw2fasta-clustalw2fasta.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT clustalw2phylip-clustalw2phylip.o -MD -MP -MF .deps/clustalw2phylip-clustalw2phylip.Tpo -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c mv -f .deps/clustalw2phylip-clustalw2phylip.Tpo .deps/clustalw2phylip-clustalw2phylip.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT compute_prior_dist-compute-prior-dist.o -MD -MP -MF .deps/compute_prior_dist-compute-prior-dist.Tpo -c -o compute_prior_dist-compute-prior-dist.o `test -f 'compute-prior-dist.c' || echo './'`compute-prior-dist.c mv -f .deps/compute_prior_dist-compute-prior-dist.Tpo .deps/compute_prior_dist-compute-prior-dist.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o compute-prior-dist compute_prior_dist-compute-prior-dist.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o compute-prior-dist compute_prior_dist-compute-prior-dist.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT compute_uniform_priors-compute-uniform-priors.o -MD -MP -MF .deps/compute_uniform_priors-compute-uniform-priors.Tpo -c -o compute_uniform_priors-compute-uniform-priors.o `test -f 'compute-uniform-priors.c' || echo './'`compute-uniform-priors.c mv -f .deps/compute_uniform_priors-compute-uniform-priors.Tpo .deps/compute_uniform_priors-compute-uniform-priors.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT create_priors-create-priors.o -MD -MP -MF .deps/create_priors-create-priors.Tpo -c -o create_priors-create-priors.o `test -f 'create-priors.c' || echo './'`create-priors.c mv -f .deps/create_priors-create-priors.Tpo .deps/create_priors-create-priors.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o create-priors create_priors-create-priors.o libcommon.la -lz -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o create-priors create_priors-create-priors.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT dtc-dtc.o -MD -MP -MF .deps/dtc-dtc.Tpo -c -o dtc-dtc.o `test -f 'dtc.c' || echo './'`dtc.c mv -f .deps/dtc-dtc.Tpo .deps/dtc-dtc.Po gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT dtc-logs.o -MD -MP -MF .deps/dtc-logs.Tpo -c -o dtc-logs.o `test -f 'logs.c' || echo './'`logs.c mv -f .deps/dtc-logs.Tpo .deps/dtc-logs.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o dtc dtc-dtc.o dtc-logs.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o dtc dtc-dtc.o dtc-logs.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fasta_get_markov-fasta-get-markov.o -MD -MP -MF .deps/fasta_get_markov-fasta-get-markov.Tpo -c -o fasta_get_markov-fasta-get-markov.o `test -f 'fasta-get-markov.c' || echo './'`fasta-get-markov.c mv -f .deps/fasta_get_markov-fasta-get-markov.Tpo .deps/fasta_get_markov-fasta-get-markov.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-get-markov fasta_get_markov-fasta-get-markov.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-get-markov fasta_get_markov-fasta-get-markov.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fasta_shuffle_letters-fasta-shuffle-letters.o -MD -MP -MF .deps/fasta_shuffle_letters-fasta-shuffle-letters.Tpo -c -o fasta_shuffle_letters-fasta-shuffle-letters.o `test -f 'fasta-shuffle-letters.c' || echo './'`fasta-shuffle-letters.c mv -f .deps/fasta_shuffle_letters-fasta-shuffle-letters.Tpo .deps/fasta_shuffle_letters-fasta-shuffle-letters.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fasta_shuffle_letters-ushuffle.o -MD -MP -MF .deps/fasta_shuffle_letters-ushuffle.Tpo -c -o fasta_shuffle_letters-ushuffle.o `test -f 'ushuffle.c' || echo './'`ushuffle.c mv -f .deps/fasta_shuffle_letters-ushuffle.Tpo .deps/fasta_shuffle_letters-ushuffle.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-shuffle-letters fasta_shuffle_letters-fasta-shuffle-letters.o fasta_shuffle_letters-ushuffle.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-shuffle-letters fasta_shuffle_letters-fasta-shuffle-letters.o fasta_shuffle_letters-ushuffle.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fasta_from_bed-fasta-from-bed.o -MD -MP -MF .deps/fasta_from_bed-fasta-from-bed.Tpo -c -o fasta_from_bed-fasta-from-bed.o `test -f 'fasta-from-bed.c' || echo './'`fasta-from-bed.c mv -f .deps/fasta_from_bed-fasta-from-bed.Tpo .deps/fasta_from_bed-fasta-from-bed.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-from-bed fasta_from_bed-fasta-from-bed.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fasta-from-bed fasta_from_bed-fasta-from-bed.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DFE_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fisher_exact-fisher_exact.o -MD -MP -MF .deps/fisher_exact-fisher_exact.Tpo -c -o fisher_exact-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c mv -f .deps/fisher_exact-fisher_exact.Tpo .deps/fisher_exact-fisher_exact.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DFE_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fisher_exact fisher_exact-fisher_exact.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DFE_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fisher_exact fisher_exact-fisher_exact.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT fitevd-fitevd.o -MD -MP -MF .deps/fitevd-fitevd.Tpo -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c mv -f .deps/fitevd-fitevd.Tpo .deps/fitevd-fitevd.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fitevd fitevd-fitevd.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o fitevd fitevd-fitevd.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gendb-gendb.o -MD -MP -MF .deps/gendb-gendb.Tpo -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c mv -f .deps/gendb-gendb.Tpo .deps/gendb-gendb.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o gendb gendb-gendb.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o gendb gendb-gendb.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm depbase=`echo getsize.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT getsize.o -MD -MP -MF $depbase.Tpo -c -o getsize.o getsize.c &&\ mv -f $depbase.Tpo $depbase.Po getsize.c: In function ‘main’: getsize.c:293:17: warning: overflow in conversion from ‘double’ to ‘long int’ changes value from ‘1.0e+12’ to ‘2147483647’ [-Woverflow] 293 | min_slength = 1e12; | ^~~~ /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o getsize getsize.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o getsize getsize.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2format-glam2_glam2format.o -MD -MP -MF .deps/glam2format-glam2_glam2format.Tpo -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c mv -f .deps/glam2format-glam2_glam2format.Tpo .deps/glam2format-glam2_glam2format.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2format-glam2_alignment.o -MD -MP -MF .deps/glam2format-glam2_alignment.Tpo -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c mv -f .deps/glam2format-glam2_alignment.Tpo .deps/glam2format-glam2_alignment.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2format-glam2_fasta.o -MD -MP -MF .deps/glam2format-glam2_fasta.Tpo -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2format-glam2_fasta.Tpo .deps/glam2format-glam2_fasta.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2format-glam2_util.o -MD -MP -MF .deps/glam2format-glam2_util.Tpo -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2format-glam2_util.Tpo .deps/glam2format-glam2_util.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2mask-glam2_glam2mask.o -MD -MP -MF .deps/glam2mask-glam2_glam2mask.Tpo -c -o glam2mask-glam2_glam2mask.o `test -f 'glam2_glam2mask.c' || echo './'`glam2_glam2mask.c mv -f .deps/glam2mask-glam2_glam2mask.Tpo .deps/glam2mask-glam2_glam2mask.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2mask-glam2_alignment.o -MD -MP -MF .deps/glam2mask-glam2_alignment.Tpo -c -o glam2mask-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c mv -f .deps/glam2mask-glam2_alignment.Tpo .deps/glam2mask-glam2_alignment.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2mask-glam2_fasta.o -MD -MP -MF .deps/glam2mask-glam2_fasta.Tpo -c -o glam2mask-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c mv -f .deps/glam2mask-glam2_fasta.Tpo .deps/glam2mask-glam2_fasta.Po gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT glam2mask-glam2_util.o -MD -MP -MF .deps/glam2mask-glam2_util.Tpo -c -o glam2mask-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c mv -f .deps/glam2mask-glam2_util.Tpo .deps/glam2mask-glam2_util.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT gomo_highlight-gomo_highlight.o -MD -MP -MF .deps/gomo_highlight-gomo_highlight.Tpo -c -o gomo_highlight-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c mv -f .deps/gomo_highlight-gomo_highlight.Tpo .deps/gomo_highlight-gomo_highlight.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o gomo_highlight gomo_highlight-gomo_highlight.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o gomo_highlight gomo_highlight-gomo_highlight.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT import_html_template-import-html-template.o -MD -MP -MF .deps/import_html_template-import-html-template.Tpo -c -o import_html_template-import-html-template.o `test -f 'import-html-template.c' || echo './'`import-html-template.c mv -f .deps/import_html_template-import-html-template.Tpo .deps/import_html_template-import-html-template.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o import-html-template import_html_template-import-html-template.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o import-html-template import_html_template-import-html-template.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT index_fasta_file-index-fasta-file.o -MD -MP -MF .deps/index_fasta_file-index-fasta-file.Tpo -c -o index_fasta_file-index-fasta-file.o `test -f 'index-fasta-file.c' || echo './'`index-fasta-file.c mv -f .deps/index_fasta_file-index-fasta-file.Tpo .deps/index_fasta_file-index-fasta-file.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o index-fasta-file index_fasta_file-index-fasta-file.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o index-fasta-file index_fasta_file-index-fasta-file.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT llr-llr.o -MD -MP -MF .deps/llr-llr.Tpo -c -o llr-llr.o `test -f 'llr.c' || echo './'`llr.c mv -f .deps/llr-llr.Tpo .deps/llr-llr.Po gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT llr-logs.o -MD -MP -MF .deps/llr-logs.Tpo -c -o llr-logs.o `test -f 'logs.c' || echo './'`logs.c mv -f .deps/llr-logs.Tpo .deps/llr-logs.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o llr llr-llr.o llr-logs.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o llr llr-llr.o llr-logs.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT meme2alph-meme2alph.o -MD -MP -MF .deps/meme2alph-meme2alph.Tpo -c -o meme2alph-meme2alph.o `test -f 'meme2alph.c' || echo './'`meme2alph.c mv -f .deps/meme2alph-meme2alph.Tpo .deps/meme2alph-meme2alph.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2alph meme2alph-meme2alph.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2alph meme2alph-meme2alph.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT meme2images-meme2images.o -MD -MP -MF .deps/meme2images-meme2images.Tpo -c -o meme2images-meme2images.o `test -f 'meme2images.c' || echo './'`meme2images.c mv -f .deps/meme2images-meme2images.Tpo .deps/meme2images-meme2images.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2images meme2images-meme2images.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2images meme2images-meme2images.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT meme2meme-meme2meme.o -MD -MP -MF .deps/meme2meme-meme2meme.Tpo -c -o meme2meme-meme2meme.o `test -f 'meme2meme.c' || echo './'`meme2meme.c mv -f .deps/meme2meme-meme2meme.Tpo .deps/meme2meme-meme2meme.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2meme meme2meme-meme2meme.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme2meme meme2meme-meme2meme.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -O2 -march=i586 -mtune=i686 -std=gnu89 -MT meme_get_motif-meme-get-motif.o -MD -MP -MF .deps/meme_get_motif-meme-get-motif.Tpo -c -o meme_get_motif-meme-get-motif.o `test -f 'meme-get-motif.c' || echo './'`meme-get-motif.c mv -f .deps/meme_get_motif-meme-get-motif.Tpo .deps/meme_get_motif-meme-get-motif.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme-get-motif meme_get_motif-meme-get-motif.o libcommon.la -lmpi -lz -lm libtool: link: gcc -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme-get-motif meme_get_motif-meme-get-motif.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT motif_shuffle_columns-motif-shuffle-columns.o -MD -MP -MF .deps/motif_shuffle_columns-motif-shuffle-columns.Tpo -c -o motif_shuffle_columns-motif-shuffle-columns.o `test -f 'motif-shuffle-columns.c' || echo './'`motif-shuffle-columns.c mv -f .deps/motif_shuffle_columns-motif-shuffle-columns.Tpo .deps/motif_shuffle_columns-motif-shuffle-columns.Po /bin/sh ../libtool --tag=CC --mode=link gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o motif-shuffle-columns motif_shuffle_columns-motif-shuffle-columns.o libcommon.la -lmpi -lz -lm libtool: link: gcc -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o motif-shuffle-columns motif_shuffle_columns-motif-shuffle-columns.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT motiph-motiph.o -MD -MP -MF .deps/motiph-motiph.Tpo -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c mv -f .deps/motiph-motiph.Tpo .deps/motiph-motiph.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o motiph motiph-motiph.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o motiph motiph-motiph.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT pmp_bf-pmp_bf.o -MD -MP -MF .deps/pmp_bf-pmp_bf.Tpo -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c mv -f .deps/pmp_bf-pmp_bf.Tpo .deps/pmp_bf-pmp_bf.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o pmp_bf pmp_bf-pmp_bf.o libcommon.la -lmpi -lz -lm libtool: link: gcc -DMOTIPH -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o pmp_bf pmp_bf-pmp_bf.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ramen-ramen.o -MD -MP -MF .deps/ramen-ramen.Tpo -c -o ramen-ramen.o `test -f 'ramen.c' || echo './'`ramen.c mv -f .deps/ramen-ramen.Tpo .deps/ramen-ramen.Po gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ramen-ramen_scan.o -MD -MP -MF .deps/ramen-ramen_scan.Tpo -c -o ramen-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c mv -f .deps/ramen-ramen_scan.Tpo .deps/ramen-ramen_scan.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ramen ramen-ramen.o ramen-ramen_scan.o libcommon.la -lxml2 -lz -llzma -lm -ldl -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -I/usr/include/libxml2 -O2 -march=i586 -mtune=i686 -std=gnu89 -o ramen ramen-ramen.o ramen-ramen_scan.o ./.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT qvalue-qvalue.o -MD -MP -MF .deps/qvalue-qvalue.Tpo -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c mv -f .deps/qvalue-qvalue.Tpo .deps/qvalue-qvalue.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o qvalue qvalue-qvalue.o libcommon.la -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o qvalue qvalue-qvalue.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ranksum_test-ranksum_test.o -MD -MP -MF .deps/ranksum_test-ranksum_test.Tpo -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c mv -f .deps/ranksum_test-ranksum_test.Tpo .deps/ranksum_test-ranksum_test.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o ranksum_test ranksum_test-ranksum_test.o libcommon.la -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o ranksum_test ranksum_test-ranksum_test.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT reconcile_tree_alignment-reconcile-tree-alignment.o -MD -MP -MF .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c mv -f .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo .deps/reconcile_tree_alignment-reconcile-tree-alignment.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libcommon.la -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT reduce_alignment-reduce-alignment.o -MD -MP -MF .deps/reduce_alignment-reduce-alignment.Tpo -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c mv -f .deps/reduce_alignment-reduce-alignment.Tpo .deps/reduce_alignment-reduce-alignment.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o reduce-alignment reduce_alignment-reduce-alignment.o libcommon.la -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o reduce-alignment reduce_alignment-reduce-alignment.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT remove_alignment_gaps-remove-alignment-gaps.o -MD -MP -MF .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c mv -f .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo .deps/remove_alignment_gaps-remove-alignment-gaps.Po /bin/sh ../libtool --tag=CC --mode=link gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libcommon.la -lm -lmpi -lz -lm libtool: link: gcc -DMAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o ./.libs/libcommon.a -llzma -ldl -lxslt -lxml2 -lmpi -lz -lm make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making all in parallel make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-banner.o -MD -MP -MF ../.deps/meme-banner.Tpo -c -o ../meme-banner.o `test -f '../banner.c' || echo './'`../banner.c mv -f ../.deps/meme-banner.Tpo ../.deps/meme-banner.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-bates.o -MD -MP -MF ../.deps/meme-bates.Tpo -c -o ../meme-bates.o `test -f '../bates.c' || echo './'`../bates.c mv -f ../.deps/meme-bates.Tpo ../.deps/meme-bates.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-branching_search.o -MD -MP -MF ../.deps/meme-branching_search.Tpo -c -o ../meme-branching_search.o `test -f '../branching_search.c' || echo './'`../branching_search.c mv -f ../.deps/meme-branching_search.Tpo ../.deps/meme-branching_search.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-calculate_p_y.o -MD -MP -MF ../.deps/meme-calculate_p_y.Tpo -c -o ../meme-calculate_p_y.o `test -f '../calculate_p_y.c' || echo './'`../calculate_p_y.c mv -f ../.deps/meme-calculate_p_y.Tpo ../.deps/meme-calculate_p_y.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-discretize.o -MD -MP -MF ../.deps/meme-discretize.Tpo -c -o ../meme-discretize.o `test -f '../discretize.c' || echo './'`../discretize.c mv -f ../.deps/meme-discretize.Tpo ../.deps/meme-discretize.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-display.o -MD -MP -MF ../.deps/meme-display.Tpo -c -o ../meme-display.o `test -f '../display.c' || echo './'`../display.c mv -f ../.deps/meme-display.Tpo ../.deps/meme-display.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-dpalign.o -MD -MP -MF ../.deps/meme-dpalign.Tpo -c -o ../meme-dpalign.o `test -f '../dpalign.c' || echo './'`../dpalign.c mv -f ../.deps/meme-dpalign.Tpo ../.deps/meme-dpalign.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-em.o -MD -MP -MF ../.deps/meme-em.Tpo -c -o ../meme-em.o `test -f '../em.c' || echo './'`../em.c mv -f ../.deps/meme-em.Tpo ../.deps/meme-em.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-exec_parallel.o -MD -MP -MF ../.deps/meme-exec_parallel.Tpo -c -o ../meme-exec_parallel.o `test -f '../exec_parallel.c' || echo './'`../exec_parallel.c mv -f ../.deps/meme-exec_parallel.Tpo ../.deps/meme-exec_parallel.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-fasta-get-markov.o -MD -MP -MF ../.deps/meme-fasta-get-markov.Tpo -c -o ../meme-fasta-get-markov.o `test -f '../fasta-get-markov.c' || echo './'`../fasta-get-markov.c mv -f ../.deps/meme-fasta-get-markov.Tpo ../.deps/meme-fasta-get-markov.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-fisher_exact.o -MD -MP -MF ../.deps/meme-fisher_exact.Tpo -c -o ../meme-fisher_exact.o `test -f '../fisher_exact.c' || echo './'`../fisher_exact.c mv -f ../.deps/meme-fisher_exact.Tpo ../.deps/meme-fisher_exact.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-init.o -MD -MP -MF ../.deps/meme-init.Tpo -c -o ../meme-init.o `test -f '../init.c' || echo './'`../init.c mv -f ../.deps/meme-init.Tpo ../.deps/meme-init.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-justlike.o -MD -MP -MF ../.deps/meme-justlike.Tpo -c -o ../meme-justlike.o `test -f '../justlike.c' || echo './'`../justlike.c mv -f ../.deps/meme-justlike.Tpo ../.deps/meme-justlike.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-likelihood.o -MD -MP -MF ../.deps/meme-likelihood.Tpo -c -o ../meme-likelihood.o `test -f '../likelihood.c' || echo './'`../likelihood.c mv -f ../.deps/meme-likelihood.Tpo ../.deps/meme-likelihood.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-llr.o -MD -MP -MF ../.deps/meme-llr.Tpo -c -o ../meme-llr.o `test -f '../llr.c' || echo './'`../llr.c mv -f ../.deps/meme-llr.Tpo ../.deps/meme-llr.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-log_erfc.o -MD -MP -MF ../.deps/meme-log_erfc.Tpo -c -o ../meme-log_erfc.o `test -f '../log_erfc.c' || echo './'`../log_erfc.c mv -f ../.deps/meme-log_erfc.Tpo ../.deps/meme-log_erfc.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-logs.o -MD -MP -MF ../.deps/meme-logs.Tpo -c -o ../meme-logs.o `test -f '../logs.c' || echo './'`../logs.c mv -f ../.deps/meme-logs.Tpo ../.deps/meme-logs.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-meme.o -MD -MP -MF ../.deps/meme-meme.Tpo -c -o ../meme-meme.o `test -f '../meme.c' || echo './'`../meme.c mv -f ../.deps/meme-meme.Tpo ../.deps/meme-meme.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-meme_util.o -MD -MP -MF ../.deps/meme-meme_util.Tpo -c -o ../meme-meme_util.o `test -f '../meme_util.c' || echo './'`../meme_util.c mv -f ../.deps/meme-meme_util.Tpo ../.deps/meme-meme_util.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-message.o -MD -MP -MF ../.deps/meme-message.Tpo -c -o ../meme-message.o `test -f '../message.c' || echo './'`../message.c mv -f ../.deps/meme-message.Tpo ../.deps/meme-message.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-mp.o -MD -MP -MF ../.deps/meme-mp.Tpo -c -o ../meme-mp.o `test -f '../mp.c' || echo './'`../mp.c mv -f ../.deps/meme-mp.Tpo ../.deps/meme-mp.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-oops.o -MD -MP -MF ../.deps/meme-oops.Tpo -c -o ../meme-oops.o `test -f '../oops.c' || echo './'`../oops.c mv -f ../.deps/meme-oops.Tpo ../.deps/meme-oops.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-partition.o -MD -MP -MF ../.deps/meme-partition.Tpo -c -o ../meme-partition.o `test -f '../partition.c' || echo './'`../partition.c mv -f ../.deps/meme-partition.Tpo ../.deps/meme-partition.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-prior.o -MD -MP -MF ../.deps/meme-prior.Tpo -c -o ../meme-prior.o `test -f '../prior.c' || echo './'`../prior.c mv -f ../.deps/meme-prior.Tpo ../.deps/meme-prior.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-psp.o -MD -MP -MF ../.deps/meme-psp.Tpo -c -o ../meme-psp.o `test -f '../psp.c' || echo './'`../psp.c mv -f ../.deps/meme-psp.Tpo ../.deps/meme-psp.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-read_seq_file.o -MD -MP -MF ../.deps/meme-read_seq_file.Tpo -c -o ../meme-read_seq_file.o `test -f '../read_seq_file.c' || echo './'`../read_seq_file.c mv -f ../.deps/meme-read_seq_file.Tpo ../.deps/meme-read_seq_file.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-seed.o -MD -MP -MF ../.deps/meme-seed.Tpo -c -o ../meme-seed.o `test -f '../seed.c' || echo './'`../seed.c mv -f ../.deps/meme-seed.Tpo ../.deps/meme-seed.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-seed_diffs.o -MD -MP -MF ../.deps/meme-seed_diffs.Tpo -c -o ../meme-seed_diffs.o `test -f '../seed_diffs.c' || echo './'`../seed_diffs.c mv -f ../.deps/meme-seed_diffs.Tpo ../.deps/meme-seed_diffs.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-seq2theta.o -MD -MP -MF ../.deps/meme-seq2theta.Tpo -c -o ../meme-seq2theta.o `test -f '../seq2theta.c' || echo './'`../seq2theta.c mv -f ../.deps/meme-seq2theta.Tpo ../.deps/meme-seq2theta.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-sp_matrix.o -MD -MP -MF ../.deps/meme-sp_matrix.Tpo -c -o ../meme-sp_matrix.o `test -f '../sp_matrix.c' || echo './'`../sp_matrix.c mv -f ../.deps/meme-sp_matrix.Tpo ../.deps/meme-sp_matrix.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-starts.o -MD -MP -MF ../.deps/meme-starts.Tpo -c -o ../meme-starts.o `test -f '../starts.c' || echo './'`../starts.c mv -f ../.deps/meme-starts.Tpo ../.deps/meme-starts.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-subseq7.o -MD -MP -MF ../.deps/meme-subseq7.Tpo -c -o ../meme-subseq7.o `test -f '../subseq7.c' || echo './'`../subseq7.c mv -f ../.deps/meme-subseq7.Tpo ../.deps/meme-subseq7.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-tcm.o -MD -MP -MF ../.deps/meme-tcm.Tpo -c -o ../meme-tcm.o `test -f '../tcm.c' || echo './'`../tcm.c mv -f ../.deps/meme-tcm.Tpo ../.deps/meme-tcm.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-ushuffle.o -MD -MP -MF ../.deps/meme-ushuffle.Tpo -c -o ../meme-ushuffle.o `test -f '../ushuffle.c' || echo './'`../ushuffle.c mv -f ../.deps/meme-ushuffle.Tpo ../.deps/meme-ushuffle.Po /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../.. -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -MT ../meme-verbosity.o -MD -MP -MF ../.deps/meme-verbosity.Tpo -c -o ../meme-verbosity.o `test -f '../verbosity.c' || echo './'`../verbosity.c mv -f ../.deps/meme-verbosity.Tpo ../.deps/meme-verbosity.Po /bin/sh ../../libtool --tag=CC --mode=link /usr/bin/mpicc -I.. -DPARALLEL -I/usr/include/libxml2 -DMPI_CMD="/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme ../meme-banner.o ../meme-bates.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fasta-get-markov.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-log_erfc.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o ../libcommon.la -lxml2 -lz -llzma -lm -ldl -lmpi -lz -lm libtool: link: /usr/bin/mpicc -I.. -DPARALLEL -I/usr/include/libxml2 "-DMPI_CMD=/usr/bin/mpirun -np" -DMEME_MAIN -O2 -march=i586 -mtune=i686 -std=gnu89 -o meme ../meme-banner.o ../meme-bates.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fasta-get-markov.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-log_erfc.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o ../.libs/libcommon.a -lxslt -lxml2 -llzma -ldl -lmpi -lz -lm make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making all in scripts make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' meme-chip.pl.in > meme-chip; \ chmod +x meme-chip /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' dreme.py.in > dreme; \ chmod +x dreme rm -f ../src/dreme ln dreme ../src/dreme # Copy to src for testing purposes /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' ama-qvalues.pl.in > ama-qvalues; \ chmod +x ama-qvalues /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' beeml2meme.pl.in > beeml2meme; \ chmod +x beeml2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' dreme_xml_to_html.pl.in > dreme_xml_to_html; \ chmod +x dreme_xml_to_html /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' dreme_xml_to_txt.pl.in > dreme_xml_to_txt; \ chmod +x dreme_xml_to_txt /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' elm2meme.pl.in > elm2meme; \ chmod +x elm2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-center.pl.in > fasta-center; \ chmod +x fasta-center /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-dinucleotide-shuffle.py.in > fasta-dinucleotide-shuffle; \ chmod +x fasta-dinucleotide-shuffle /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-fetch.pl.in > fasta-fetch; \ chmod +x fasta-fetch /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-hamming-enrich.py.in > fasta-hamming-enrich; \ chmod +x fasta-hamming-enrich /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-make-index.pl.in > fasta-make-index; \ chmod +x fasta-make-index /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-most.pl.in > fasta-most; \ chmod +x fasta-most /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-re-match.pl.in > fasta-re-match; \ chmod +x fasta-re-match /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-subsample.pl.in > fasta-subsample; \ chmod +x fasta-subsample /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' fasta-unique-names.pl.in > fasta-unique-names; \ chmod +x fasta-unique-names /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' glam2html.py.in > glam2html; \ chmod +x glam2html rm -f ../src/glam2html ln glam2html ../src/glam2html # Copy to src for testing purposes /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' glam2psfm.py.in > glam2psfm; \ chmod +x glam2psfm rm -f ../src/glam2psfm ln glam2psfm ../src/glam2psfm # Copy to src for testing purposes /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' glam2scan2html.py.in > glam2scan2html; \ chmod +x glam2scan2html rm -f ../src/glam2scan2html ln glam2scan2html ../src/glam2scan2html # Copy to src for testing purposes /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' chen2meme.pl.in > chen2meme; \ chmod +x chen2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' jaspar2meme.pl.in > jaspar2meme; \ chmod +x jaspar2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' hart2meme-bkg.pl.in > hart2meme-bkg; \ chmod +x hart2meme-bkg /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' hartemink2psp.pl.in > hartemink2psp; \ chmod +x hartemink2psp /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' iupac2meme.pl.in > iupac2meme; \ chmod +x iupac2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' mast_xml_to_html.pl.in > mast_xml_to_html; \ chmod +x mast_xml_to_html /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' mast_xml_to_txt.pl.in > mast_xml_to_txt; \ chmod +x mast_xml_to_txt /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' matrix2meme.pl.in > matrix2meme; \ chmod +x matrix2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' meme-chip_html_to_tsv.pl.in > meme-chip_html_to_tsv; \ chmod +x meme-chip_html_to_tsv /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' meme-rename.pl.in > meme-rename; \ chmod +x meme-rename /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' meme_xml_to_html.pl.in > meme_xml_to_html; \ chmod +x meme_xml_to_html /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' nmica2meme.pl.in > nmica2meme; \ chmod +x nmica2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' priority2meme.pl.in > priority2meme; \ chmod +x priority2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' psp-gen.pl.in > psp-gen; \ chmod +x psp-gen /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' rsat-retrieve-seq.pl.in > rsat-retrieve-seq; \ chmod +x rsat-retrieve-seq /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' rsat-supported-organisms.pl.in > rsat-supported-organisms; \ chmod +x rsat-supported-organisms /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' rna2meme.pl.in > rna2meme; \ chmod +x rna2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' scpd2meme.pl.in > scpd2meme; \ chmod +x scpd2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' sites2meme.pl.in > sites2meme; \ chmod +x sites2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' streme_xml_to_html.pl.in > streme_xml_to_html; \ chmod +x streme_xml_to_html /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' taipale2meme.pl.in > taipale2meme; \ chmod +x taipale2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' tamo2meme.pl.in > tamo2meme; \ chmod +x tamo2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' tomtom_xml_to_html.pl.in > tomtom_xml_to_html; \ chmod +x tomtom_xml_to_html /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' transfac2meme.pl.in > transfac2meme; \ chmod +x transfac2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' uniprobe2meme.pl.in > uniprobe2meme; \ chmod +x uniprobe2meme /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' Globals.pm.in > Globals.pm /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' MemeWebUtils.pm.in > MemeWebUtils.pm /usr/bin/sed -e 's%@ARCHIVE_REVISION@%1667d7719daf2af1693cc039ba463bc4d2304d23%' -e 's%@ARCHIVE_DATE@%Sun Feb 7 15:39:52 2021 -0800%' -e 's%@ARCHIVE_VERSION@%5.3.3%' -e 's%@TMP_DIR@%/tmp%' -e 's%@WHICHMONO@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHPYTHON3@%%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLLIBDIR@%/usr/lib/meme-suite/perl%' -e 's%@PYTHONLIBDIR@%/usr/lib/meme-suite/python%' -e 's%@JAVALIBDIR@%/usr/lib/meme-suite/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/usr/share/meme-suite%' -e 's%@BINDIR@%/usr/bin%' -e 's%@LIBEXECDIR@%/usr/libexec/meme-suite%' -e 's%@MEMELOGS@%/var/meme-suite-5.3.3/LOGS%' -e 's%@MEMEDB@%/var/lib/meme-suite%' -e 's%@SITE_URL@%http://meme-suite.org%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%@MAX_TIME@%14400%' -e 's%@DOCDIR@%/usr/share/meme-suite/doc/%' -e 's%@maxmemory@%4%' -e 's%@streme_length_factor@%1e6%' StatusPage.pm.in > StatusPage.pm cp fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py cp fasta-hamming-enrich fasta-hamming-enrich.py make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' Making all in tests make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' Making all in ame make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' Making all in clustalw2fasta make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' Making all in centrimo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' Making all in common make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' Making all in motif.crp0 make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' Making all in motif.Puf3p make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' Making all in create-priors make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' Making all in draw-mhmm make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' Making all in dreme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' Making all in fasta-center make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' Making all in fimo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' Making all in glam2 make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' Making all in glam2scan make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' Making all in gomo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' Making all in mast make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' Making all in mcast make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' Making all in meme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' Making all in meme-chip make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' Making all in mhmm make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' Making all in mhmms make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' Making all in momo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' Making all in mhmmscan make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' Making all in motiph make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' Making all in psp-gen make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' Makefile:521: warning: ignoring prerequisites on suffix rule definition make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' Making all in qvalue make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' Making all in scaffold make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' Making all in spamo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' Making all in streme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' Making all in tgene make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' Making all in tomtom make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' Making all in web make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' Making all in scripts make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' Making all in doc make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' /usr/bin/sed -e "/INSERT_COPYING_FILE/r ../COPYING" -e "/INSERT_COPYING_FILE/d" copyright.html.in > copyright.html make all-recursive make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' Making all in examples make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' Making all in compute_prior_dist_example_output_files make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' Making all in sample_opal_scripts make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' /usr/bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' create_examples.pl.in > create_examples; \ chmod +x create_examples make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' Making all in images make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' Making all in css make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' Making all in js make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' /usr/bin/sed -e 's%\@VERSION\@%5.3.3%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@ALT_URL\@%%g' -e 's%\@URL\@%http://meme-suite.org%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' constants.js.in > constants.js /usr/bin/sed -e 's%\@VERSION\@%5.3.3%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@ALT_URL\@%%g' -e 's%\@URL\@%http://meme-suite.org%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' menu.js.in > menu.js /usr/bin/sed -e 's%\@VERSION\@%5.3.3%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@ALT_URL\@%%g' -e 's%\@URL\@%http://meme-suite.org%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' menu-configure.js.in > menu-configure.js /usr/bin/sed -e 's%\@VERSION\@%5.3.3%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@ALT_URL\@%%g' -e 's%\@URL\@%http://meme-suite.org%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' menu-data.js.in > menu-data.js make all-am make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' download.html.in > download.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' download-index.html.in > download-index.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' general-faq.html.in > general-faq.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' install.html.in > install.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' scripting.html.in > scripting.html make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' Making all in etc make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' ame_template.html.in > ame_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' beadstring.xsl.in > beadstring.xsl /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' centrimo_template.html.in > centrimo_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' tgene_template.html.in > tgene_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' constants.js.in > constants.js /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' constants.xsl.in > constants.xsl /usr/bin/sed 's%tname%constants.js%' ./xsl-wrapper.in | /usr/bin/sed '5r constants.js' > constants.js.xsl /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' dreme_template.html.in > dreme_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' gomo-to-html.xsl.in > gomo-to-html.xsl /usr/bin/perl ../etc/generate_xsl_icons.pl ../doc/images/gomo_icon.png > icons.xsl /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' logging.conf.in > logging.conf /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' mast_template.html.in > mast_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' mcast_template.html.in > mcast_template.html /usr/bin/sed 's%tname%meme.css%' ./xsl-wrapper.in | /usr/bin/sed '5r meme.css' > meme.css.xsl /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' meme_template.html.in > meme_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' momo_template.html.in > momo_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' meme-chip_template.html.in > meme-chip_template.html /usr/bin/perl ../etc/generate_js_wrapped_template.pl motif_logo_template template.eps > motif_logo_template.js /usr/bin/sed 's%tname%simple-shared-doc.js%' ./xsl-wrapper.in | /usr/bin/sed '5r simple-shared-doc.js' > simple-shared-doc.js.xsl /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' spamo_template.html.in > spamo_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' streme_template.html.in > streme_template.html /usr/bin/sed -e 's%\@SOURCE_URL\@%https://meme-suite.org%g' -e 's%\@SITE_URL\@%http://meme-suite.org%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@AMIGO_URL\@%http://amigo.geneontology.org/amigo/term/GO_TERM_ID%' tomtom_template.html.in > tomtom_template.html /usr/bin/sed 's%tname%utilities.js%' ./xsl-wrapper.in | /usr/bin/sed '5r utilities.js' > utilities.js.xsl make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' Making all in website make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' Making all in templates make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[1]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make install-recursive make[1]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' Making install in src make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' make install-recursive make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making install in filters make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' Making install in purge make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/ginstall -c purge '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' libtool: install: /usr/bin/ginstall -c purge /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/purge make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/purge' Making install in dust make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/ginstall -c dust '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' libtool: install: /usr/bin/ginstall -c dust /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/dust make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters/dust' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/filters' Making install in libxml2 make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxml2' Making install in libxslt make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/libxslt' Making install in . make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c ame centrimo enr fimo glam2 glam2scan gomo mast mcast momo streme spamo tgene tomtom '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' libtool: install: /usr/bin/ginstall -c ame /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/ame libtool: install: /usr/bin/ginstall -c centrimo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/centrimo libtool: install: /usr/bin/ginstall -c enr /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/enr libtool: install: /usr/bin/ginstall -c fimo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/fimo libtool: install: /usr/bin/ginstall -c glam2 /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/glam2 libtool: install: /usr/bin/ginstall -c glam2scan /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/glam2scan libtool: install: /usr/bin/ginstall -c gomo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/gomo libtool: install: /usr/bin/ginstall -c mast /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/mast libtool: install: /usr/bin/ginstall -c mcast /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/mcast libtool: install: /usr/bin/ginstall -c momo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/momo libtool: install: /usr/bin/ginstall -c streme /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/streme libtool: install: /usr/bin/ginstall -c spamo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/spamo libtool: install: /usr/bin/ginstall -c tgene /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/tgene libtool: install: /usr/bin/ginstall -c tomtom /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/tomtom /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite' /bin/sh ../libtool --mode=install /usr/bin/ginstall -c alphtype ama ceqlogo clustalw2fasta clustalw2phylip compute-prior-dist compute-uniform-priors create-priors dtc fasta-get-markov fasta-shuffle-letters fasta-from-bed fisher_exact fitevd gendb getsize glam2format glam2mask gomo_highlight import-html-template index-fasta-file llr meme2alph meme2images meme2meme meme-get-motif motif-shuffle-columns motiph pmp_bf ramen qvalue ranksum_test reconcile-tree-alignment reduce-alignment remove-alignment-gaps '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite' libtool: install: /usr/bin/ginstall -c alphtype /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/alphtype libtool: install: /usr/bin/ginstall -c ama /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/ama libtool: install: /usr/bin/ginstall -c ceqlogo /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/ceqlogo libtool: install: /usr/bin/ginstall -c clustalw2fasta /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/clustalw2fasta libtool: install: /usr/bin/ginstall -c clustalw2phylip /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/clustalw2phylip libtool: install: /usr/bin/ginstall -c compute-prior-dist /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/compute-prior-dist libtool: install: /usr/bin/ginstall -c compute-uniform-priors /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/compute-uniform-priors libtool: install: /usr/bin/ginstall -c create-priors /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/create-priors libtool: install: /usr/bin/ginstall -c dtc /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/dtc libtool: install: /usr/bin/ginstall -c fasta-get-markov /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/fasta-get-markov libtool: install: /usr/bin/ginstall -c fasta-shuffle-letters /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/fasta-shuffle-letters libtool: install: /usr/bin/ginstall -c fasta-from-bed /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/fasta-from-bed libtool: install: /usr/bin/ginstall -c fisher_exact /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/fisher_exact libtool: install: /usr/bin/ginstall -c fitevd /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/fitevd libtool: install: /usr/bin/ginstall -c gendb /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/gendb libtool: install: /usr/bin/ginstall -c getsize /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/getsize libtool: install: /usr/bin/ginstall -c glam2format /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/glam2format libtool: install: /usr/bin/ginstall -c glam2mask /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/glam2mask libtool: install: /usr/bin/ginstall -c gomo_highlight /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/gomo_highlight libtool: install: /usr/bin/ginstall -c import-html-template /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/import-html-template libtool: install: /usr/bin/ginstall -c index-fasta-file /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/index-fasta-file libtool: install: /usr/bin/ginstall -c llr /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/llr libtool: install: /usr/bin/ginstall -c meme2alph /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/meme2alph libtool: install: /usr/bin/ginstall -c meme2images /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/meme2images libtool: install: /usr/bin/ginstall -c meme2meme /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/meme2meme libtool: install: /usr/bin/ginstall -c meme-get-motif /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/meme-get-motif libtool: install: /usr/bin/ginstall -c motif-shuffle-columns /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/motif-shuffle-columns libtool: install: /usr/bin/ginstall -c motiph /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/motiph libtool: install: /usr/bin/ginstall -c pmp_bf /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/pmp_bf libtool: install: /usr/bin/ginstall -c ramen /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/ramen libtool: install: /usr/bin/ginstall -c qvalue /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/qvalue libtool: install: /usr/bin/ginstall -c ranksum_test /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/ranksum_test libtool: install: /usr/bin/ginstall -c reconcile-tree-alignment /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/reconcile-tree-alignment libtool: install: /usr/bin/ginstall -c reduce-alignment /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/reduce-alignment libtool: install: /usr/bin/ginstall -c remove-alignment-gaps /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite/remove-alignment-gaps make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making install in parallel make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /bin/sh ../../libtool --mode=install /usr/bin/ginstall -c meme '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' libtool: install: /usr/bin/ginstall -c meme /usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin/meme make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src/parallel' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/src' Making install in scripts make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /usr/bin/ginstall -c meme-chip dreme '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/bin' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite' /usr/bin/ginstall -c fasta-grep plotgen sd ama-qvalues beeml2meme dreme_xml_to_html dreme_xml_to_txt elm2meme fasta-center fasta-dinucleotide-shuffle fasta-fetch fasta-hamming-enrich fasta-make-index fasta-most fasta-re-match fasta-subsample fasta-unique-names glam2html glam2psfm glam2scan2html chen2meme jaspar2meme hart2meme-bkg hartemink2psp iupac2meme mast_xml_to_html mast_xml_to_txt matrix2meme meme-chip_html_to_tsv meme-rename meme_xml_to_html nmica2meme priority2meme psp-gen rsat-retrieve-seq rsat-supported-organisms rna2meme scpd2meme sites2meme streme_xml_to_html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite' /usr/bin/ginstall -c taipale2meme tamo2meme tomtom_xml_to_html transfac2meme uniprobe2meme fasta-dinucleotide-shuffle fasta-hamming-enrich '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/libexec/meme-suite' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/lib/meme-suite/perl' /usr/bin/ginstall -c Globals.pm MemeWebUtils.pm StatusPage.pm Alphabet.pm CheckingSAX.pm DremeSAX.pm ExecUtils.pm HtmlMonolithWr.pm JsonRdr.pm JsonWr.pm MastSAX.pm MemeSAX.pm MotifInDremeXML.pm MotifInMemeXML.pm MotifInStremeXML.pm MotifUtils.pm PriorUtils.pm ReadFastaFile.pm StremeSAX.pm TomtomSAX.pm '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/lib/meme-suite/perl' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/lib/meme-suite/python' /usr/bin/ginstall -c fasta-dinucleotide-shuffle.py fasta-hamming-enrich.py alphabet.py hypergeometric.py sequence.py alphabet_py3.py hypergeometric_py3.py sequence_py3.py '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/lib/meme-suite/python' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/scripts' Making install in tests make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' Making install in ame make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/ame' Making install in clustalw2fasta make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/clustalw2fasta' Making install in centrimo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/centrimo' Making install in common make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' Making install in motif.crp0 make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.crp0' Making install in motif.Puf3p make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common/motif.Puf3p' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/common' Making install in create-priors make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/create-priors' Making install in draw-mhmm make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/draw-mhmm' Making install in dreme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/dreme' Making install in fasta-center make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fasta-center' Making install in fimo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/fimo' Making install in glam2 make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2' Making install in glam2scan make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/glam2scan' Making install in gomo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/gomo' Making install in mast make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mast' Making install in mcast make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mcast' Making install in meme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme' Making install in meme-chip make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/meme-chip' Making install in mhmm make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmm' Making install in mhmms make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmms' Making install in momo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/momo' Making install in mhmmscan make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/mhmmscan' Making install in motiph make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/motiph' Making install in psp-gen make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' Makefile:521: warning: ignoring prerequisites on suffix rule definition make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' Makefile:521: warning: ignoring prerequisites on suffix rule definition make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/psp-gen' Making install in qvalue make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/qvalue' Making install in scaffold make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scaffold' Making install in spamo make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/spamo' Making install in streme make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/streme' Making install in tgene make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tgene' Making install in tomtom make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/tomtom' Making install in web make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/web' Making install in scripts make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests/scripts' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/tests' Making install in doc make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make install-recursive make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' Making install in examples make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' Making install in compute_prior_dist_example_output_files make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' make[6]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/compute_prior_dist_example_output_files' /usr/bin/ginstall -c -m 644 prior.dist.txt '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/compute_prior_dist_example_output_files' make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/compute_prior_dist_example_output_files' Making install in sample_opal_scripts make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[6]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts' /usr/bin/ginstall -c -m 644 crp0.fasta crp0.meme.xml FimoClient.pl FimoClient.py MemeClient.pl MemeClient.py '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts' make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples/sample_opal_scripts' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' make[6]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files' /usr/bin/ginstall -c -m 644 glam2_example_output_files/logo_ssc9.png glam2_example_output_files/logo_ssc1.eps glam2_example_output_files/logo_ssc8.png glam2_example_output_files/logo_ssc3.eps glam2_example_output_files/logo_ssc2.eps glam2_example_output_files/logo10.png glam2_example_output_files/logo_ssc6.eps glam2_example_output_files/glam2.html glam2_example_output_files/logo_ssc7.eps glam2_example_output_files/logo_ssc5.eps glam2_example_output_files/logo_ssc4.eps glam2_example_output_files/logo9.png glam2_example_output_files/logo1.eps glam2_example_output_files/logo8.png glam2_example_output_files/logo3.eps glam2_example_output_files/logo2.eps glam2_example_output_files/glam2.meme glam2_example_output_files/logo6.eps glam2_example_output_files/logo7.eps glam2_example_output_files/logo_ssc10.png glam2_example_output_files/logo5.eps glam2_example_output_files/logo4.eps glam2_example_output_files/logo9.eps glam2_example_output_files/logo8.eps glam2_example_output_files/logo1.png glam2_example_output_files/logo3.png glam2_example_output_files/logo2.png glam2_example_output_files/logo6.png glam2_example_output_files/logo7.png glam2_example_output_files/logo5.png glam2_example_output_files/logo_ssc10.eps glam2_example_output_files/logo4.png glam2_example_output_files/logo_ssc9.eps glam2_example_output_files/logo_ssc8.eps glam2_example_output_files/logo_ssc1.png glam2_example_output_files/logo_ssc3.png glam2_example_output_files/logo_ssc2.png glam2_example_output_files/logo_ssc6.png glam2_example_output_files/logo10.eps glam2_example_output_files/glam2.txt '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/meme_out/meme.txt memechip_example_output_files/meme_out/logo_rc1.eps memechip_example_output_files/meme_out/logo1.eps memechip_example_output_files/meme_out/meme.xml memechip_example_output_files/meme_out/logo_rc2.eps memechip_example_output_files/meme_out/logo3.eps memechip_example_output_files/meme_out/logo2.eps memechip_example_output_files/meme_out/logo_rc3.eps memechip_example_output_files/meme_out/meme.html memechip_example_output_files/meme_out/logo_rc1.png memechip_example_output_files/meme_out/logo1.png memechip_example_output_files/meme_out/logo3.png memechip_example_output_files/meme_out/logo_rc2.png memechip_example_output_files/meme_out/logo_rc3.png memechip_example_output_files/meme_out/logo2.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files' /usr/bin/ginstall -c -m 644 streme_example_output_files/streme.xml streme_example_output_files/streme.txt streme_example_output_files/streme.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files' /usr/bin/ginstall -c -m 644 momo_example_output_files/momo.txt momo_example_output_files/xxxxxx_T79.9_Pxxxxx.png momo_example_output_files/xxxxxH_S79.9_Dxxxxx.png momo_example_output_files/xxxxxx_S79.9_NExxxx.png momo_example_output_files/xxxxxx_S79.9_Pxxxxx.png momo_example_output_files/Kxxxxx_S79.9_Dxxxxx.png momo_example_output_files/momo.tsv momo_example_output_files/xxxRxx_S79.9_xxxxxx.png momo_example_output_files/Kxxxxx_S79.9_Pxxxxx.png momo_example_output_files/xxKRxx_S79.9_xxxxxx.png momo_example_output_files/xxxxxx_S79.9_Dxxxxx.png momo_example_output_files/xxxxxx_S79.9_DxExxx.png momo_example_output_files/momo.html momo_example_output_files/xxxxxx_S79.9_xNxxxx.png momo_example_output_files/Kxxxxx_Y79.9_xxxxxx.png momo_example_output_files/RxxSxx_S79.9_xxxxxx.png momo_example_output_files/xxxxxx_S79.9_xDxxKx.png momo_example_output_files/xxxxNx_S79.9_xDExxx.png momo_example_output_files/xxLxxx_T79.9_xxxxxx.png momo_example_output_files/xxxxxx_S79.9_xExxxx.png momo_example_output_files/xLxxxx_S79.9_xxxxxx.png momo_example_output_files/xxxxxG_S79.9_xxxxxx.png momo_example_output_files/xxxxxx_S79.9_xDxxxx.png momo_example_output_files/Kxxxxx_S79.9_xxxxxK.png momo_example_output_files/xxxxxx_T79.9_xDxxxx.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files' /usr/bin/ginstall -c -m 644 dreme_example_output_files/m11nc_CATYTCC.png dreme_example_output_files/m10rc_DTATTT.png dreme_example_output_files/m04rc_TTTCYTY.png dreme_example_output_files/m09nc_TTAAAAW.png dreme_example_output_files/m07rc_MCGCCCT.png dreme_example_output_files/m05rc_KTTTMT.png dreme_example_output_files/m13rc_RCTGTG.png dreme_example_output_files/m15nc_SACGTGA.png dreme_example_output_files/m02rc_WGATAAV.png dreme_example_output_files/m07nc_AGGGCGK.png dreme_example_output_files/m09rc_WTTTTAA.png dreme_example_output_files/m02nc_BTTATCW.png dreme_example_output_files/m10nc_AAATAH.png dreme_example_output_files/m08rc_RGGMAGG.png dreme_example_output_files/m06nc_CTGTSTS.png dreme_example_output_files/m12rc_GTGKCTG.png dreme_example_output_files/m14nc_CTGGRGA.png dreme_example_output_files/m08nc_CCTKCCY.png dreme_example_output_files/dreme.xml dreme_example_output_files/dreme.html dreme_example_output_files/m13nc_CACAGY.png dreme_example_output_files/m06rc_SASACAG.png dreme_example_output_files/m12nc_CAGMCAC.png dreme_example_output_files/m04nc_RARGAAA.png dreme_example_output_files/m11rc_GGARATG.png dreme_example_output_files/m01rc_GGGYGKGG.png dreme_example_output_files/m03rc_TGGGYGK.png dreme_example_output_files/dreme.txt dreme_example_output_files/m05nc_AKAAAM.png dreme_example_output_files/m14rc_TCYCCAG.png dreme_example_output_files/m01nc_CCMCRCCC.png dreme_example_output_files/m03nc_MCRCCCA.png dreme_example_output_files/m15rc_TCACGTS.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files' /usr/bin/ginstall -c -m 644 centrimo_example_output_files/site_counts.txt centrimo_example_output_files/centrimo.html centrimo_example_output_files/centrimo.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files' /usr/bin/ginstall -c -m 644 memechip_example_output_files/background memechip_example_output_files/seqs-shuffled memechip_example_output_files/seqs-centered memechip_example_output_files/meme-chip.html memechip_example_output_files/combined.meme memechip_example_output_files/motif_alignment.txt memechip_example_output_files/Klf1.fna memechip_example_output_files/progress_log.txt memechip_example_output_files/summary.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files' /usr/bin/ginstall -c -m 644 gomo_example_output_files/gomo.xml gomo_example_output_files/gomo.tsv gomo_example_output_files/gomo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/example-datasets' /usr/bin/ginstall -c -m 644 example-datasets/crp0.fna example-datasets/Klf1.fna example-datasets/At.faa example-datasets/lex0.fna example-datasets/dpinteract.meme example-datasets/some_vertebrates.meme example-datasets/Klf1.meme example-datasets/dpinteract_subset.meme example-datasets/mm9_tss_500bp_sampled_1000.fna example-datasets/P300.chr21.bed example-datasets/adh.meme example-datasets/adh.faa example-datasets/crp0.meme example-datasets/At.glam2 example-datasets/STRGGTCAN.meme '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/example-datasets' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files' /usr/bin/ginstall -c -m 644 mcast_example_output_files/mcast.gff mcast_example_output_files/mcast.xml mcast_example_output_files/mcast.tsv mcast_example_output_files/mcast.html mcast_example_output_files/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files' /usr/bin/ginstall -c -m 644 tgene_example_output_files/HistLev+noise.H3k4me3.tsv tgene_example_output_files/tgene.html tgene_example_output_files/TrExp.tsv tgene_example_output_files/HistLev.H3k27ac.tsv tgene_example_output_files/TrExp+noise.tsv tgene_example_output_files/HistLev+noise.H3k27ac.tsv tgene_example_output_files/HistLev.H3k4me3.tsv tgene_example_output_files/links.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/dreme_out/m01nc_MCRCCCW.png memechip_example_output_files/dreme_out/m02nc_TTATCW.png memechip_example_output_files/dreme_out/dreme.xml memechip_example_output_files/dreme_out/dreme.html memechip_example_output_files/dreme_out/m01rc_WGGGYGK.png memechip_example_output_files/dreme_out/dreme.txt memechip_example_output_files/dreme_out/m02rc_WGATAA.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files' /usr/bin/ginstall -c -m 644 meme_example_output_files/meme.txt meme_example_output_files/logo_rc1.eps meme_example_output_files/logo1.eps meme_example_output_files/meme.xml meme_example_output_files/logo_rc2.eps meme_example_output_files/logo3.eps meme_example_output_files/logo2.eps meme_example_output_files/logo_rc3.eps meme_example_output_files/meme.html meme_example_output_files/logo_rc1.png meme_example_output_files/logo1.png meme_example_output_files/logo3.png meme_example_output_files/logo_rc2.png meme_example_output_files/logo_rc3.png meme_example_output_files/logo2.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files' /usr/bin/ginstall -c -m 644 tomtom_example_output_files/tomtom.html tomtom_example_output_files/tomtom.xml tomtom_example_output_files/tomtom.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/spamo_example_output_files' /usr/bin/ginstall -c -m 644 spamo_example_output_files/spamo.tsv spamo_example_output_files/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/spamo_example_output_files' /usr/bin/ginstall -c -m 644 glam2-aa-alph.txt glam2-dna-alph.txt prior30.plib sample-dna-aln.glam2 sample-protein-aln.glam2 sample-dna-motif.meme sample-protein-motif.meme small-tide-mod.txt examples.mk example-datasets.mk create_examples.pl.in '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/.' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/centrimo_out/site_counts.txt memechip_example_output_files/centrimo_out/centrimo.html memechip_example_output_files/centrimo_out/centrimo.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res' /usr/bin/ginstall -c -m 644 gomo_example_output_files/res/logo1.png gomo_example_output_files/res/logo3.png gomo_example_output_files/res/logo2.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files' /usr/bin/ginstall -c -m 644 ame_example_output_files/ame.tsv ame_example_output_files/sequences.tsv ame_example_output_files/ame.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/streme_tomtom_out/tomtom.html memechip_example_output_files/streme_tomtom_out/tomtom.xml memechip_example_output_files/streme_tomtom_out/tomtom.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_1/spamo.tsv memechip_example_output_files/spamo_out_1/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_2/spamo.tsv memechip_example_output_files/spamo_out_2/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_3/spamo.tsv memechip_example_output_files/spamo_out_3/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_4/spamo.tsv memechip_example_output_files/spamo_out_4/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_5/spamo.tsv memechip_example_output_files/spamo_out_5/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6' /usr/bin/ginstall -c -m 644 memechip_example_output_files/spamo_out_6/spamo.tsv memechip_example_output_files/spamo_out_6/spamo.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/dreme_tomtom_out/tomtom.html memechip_example_output_files/dreme_tomtom_out/tomtom.xml memechip_example_output_files/dreme_tomtom_out/tomtom.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/streme_out/streme.xml memechip_example_output_files/streme_out/streme.txt memechip_example_output_files/streme_out/streme.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_1/fimo.tsv memechip_example_output_files/fimo_out_1/fimo.xml memechip_example_output_files/fimo_out_1/fimo.gff memechip_example_output_files/fimo_out_1/fimo.html memechip_example_output_files/fimo_out_1/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_2/fimo.tsv memechip_example_output_files/fimo_out_2/fimo.xml memechip_example_output_files/fimo_out_2/fimo.gff memechip_example_output_files/fimo_out_2/fimo.html memechip_example_output_files/fimo_out_2/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_3/fimo.tsv memechip_example_output_files/fimo_out_3/fimo.xml memechip_example_output_files/fimo_out_3/fimo.gff memechip_example_output_files/fimo_out_3/fimo.html memechip_example_output_files/fimo_out_3/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files' /usr/bin/ginstall -c -m 644 mast_example_output_files/mast.html mast_example_output_files/mast.xml mast_example_output_files/mast.txt '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files' /usr/bin/ginstall -c -m 644 fimo_example_output_files/fimo.tsv fimo_example_output_files/fimo.xml fimo_example_output_files/fimo.gff fimo_example_output_files/fimo.html fimo_example_output_files/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_4/fimo.tsv memechip_example_output_files/fimo_out_4/fimo.xml memechip_example_output_files/fimo_out_4/fimo.gff memechip_example_output_files/fimo_out_4/fimo.html memechip_example_output_files/fimo_out_4/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_5/fimo.tsv memechip_example_output_files/fimo_out_5/fimo.xml memechip_example_output_files/fimo_out_5/fimo.gff memechip_example_output_files/fimo_out_5/fimo.html memechip_example_output_files/fimo_out_5/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2scan_example_output_files' /usr/bin/ginstall -c -m 644 glam2scan_example_output_files/glam2scan.html glam2scan_example_output_files/glam2scan.txt '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2scan_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6' /usr/bin/ginstall -c -m 644 memechip_example_output_files/fimo_out_6/fimo.tsv memechip_example_output_files/fimo_out_6/fimo.xml memechip_example_output_files/fimo_out_6/fimo.gff memechip_example_output_files/fimo_out_6/fimo.html memechip_example_output_files/fimo_out_6/cisml.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out' /usr/bin/ginstall -c -m 644 memechip_example_output_files/meme_tomtom_out/tomtom.html memechip_example_output_files/meme_tomtom_out/tomtom.xml memechip_example_output_files/meme_tomtom_out/tomtom.tsv '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files' /usr/bin/ginstall -c -m 644 motiph_example_output_files/cisml-to-html.xsl motiph_example_output_files/motiph.txt motiph_example_output_files/motiph.html motiph_example_output_files/cisml.css motiph_example_output_files/motiph.gff motiph_example_output_files/motiph.xml '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files' /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files' /usr/bin/ginstall -c -m 644 glam2_example_output_files/logo_ssc7.png glam2_example_output_files/logo_ssc5.png glam2_example_output_files/logo_ssc4.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files' make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/examples' Making install in images make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/images' /usr/bin/ginstall -c -m 644 ame_icon.png centrimo_icon.png tgene_icon.png dreme_icon.png fimo_icon.png glam2_icon.png glam2scan_icon.png gomo_icon.png gtscan_icon.png mast_icon.png mcast_icon.png meme_icon.png memechip_icon.png momo_icon.png spamo_icon.png streme_icon.png tomtom_icon.png exp4b.dna.memory.seqlen.png exp4b.protein.memory.seqlen.png exp4b.rna.memory.seqlen.png exp4b.dna.time.seqlen.png exp4b.protein.time.seqlen.png exp4b.rna.time.seqlen.png exp28b.1.anr.png exp28b.1.oops.png exp28b.1.zoops.png exp28b.6.anr.png exp28b.6.oops.png exp28b.6.zoops.png exp28d.kmers.png exp28d.triples.png improved_icon.png memesuite_icon.ico memesuite_icon.png new_icon.png unr_logo.png uq_logo.png ucsd_logo.png UWlogo150p.gif webserver_schema.png '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/images' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/images' Making install in css make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/css' /usr/bin/ginstall -c -m 644 style.css menu.css '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/css' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/css' Making install in js make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make install-am make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[6]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[6]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/js' /usr/bin/ginstall -c -m 644 Markdown.Converter.js Markdown.Converter.LICENSE manual.js menu-path.js shared-doc.js constants.js menu.js menu-configure.js menu-data.js constants.js.in centrimo_graph.js tgene_doc.js delay_draw.js eps_context.js motif_logo.js simple-shared-doc.js spamo_graph.js utilities.js '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc/js' make[6]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc/js' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[5]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc' /usr/bin/ginstall -c -m 644 ../etc/prior30.plib alphabets.html alphabet-format.html alphtype.html ama.html ama-qvalues.html ame.html ame-output-format.html ame-tutorial.html authors.html beadstring.html bed-format.html beeml2meme.html bfile-format.html centrimo.html centrimo-output-format.html centrimo-tutorial.html tgene.html tgene-tutorial.html ceqlogo.html chen2meme.html tgene-output-format.html cite.html clustalw2fasta.html clustalw2phylip.html clustalw-format.html compute-prior-dist.html compute-uniform-priors.html copyright.html create-priors.html dmix-format.html draw-mhmm.html dreme.html dreme-tutorial.html dust.html elm2meme.html enr.html fasta-center.html fasta-dinucleotide-shuffle.html fasta-fetch.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc' /usr/bin/ginstall -c -m 644 fasta-format.html fasta-get-markov.html fasta-grep.html fasta-hamming-enrich.html fasta-io.html fasta-make-index.html fasta-most.html fasta-shuffle-letters.html fasta-subsample.html fasta-unique-names.html fimo.html fimo-output-format.html fimo-tutorial.html fisher_exact.html fitevd.html gendb.html getsize.html glam2.html glam2format.html glam2mask.html glam2scan.html glam2_alphabet.html glam2_tut.html GLAM2_method.pdf godag-format.html gomo.html gomo-output-format.html gomo_highlight.html iupac.html iupac2meme.html jaspar2meme.html log-hmm.html mast.html matrix2meme.html mcast.html mcast-output-format.html meme.html meme2alph.html meme-chip.html meme-chip-output-format.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc' /usr/bin/ginstall -c -m 644 meme-format.html meme-get-motif.html meme-rename.html meme2images.html meme2meme.html mhmme.html mhmm.html mhmm2html.html mhmm-format.html mhmmscan.html mhmmscan-format.html mhmms.html momo.html momo-output-format.html motif-shuffle-columns.html motif-consensus.html motif_conversion.html motiph.html news.txt nmica2meme.html overview.html pmp_bf.html priority2meme.html psm-format.html psp-format.html psp-gen.html purge.html qvalue.html reconcile-tree-alignment.html reduce-alignment.html release-notes.html remove-alignment-gaps.html rna2meme.html scpd2meme.html server_down.html shadow.html sites2meme.html spamo.html spamo-output-format.html streme.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc' /usr/bin/ginstall -c -m 644 streme-tutorial.html taipale2meme.html tamo2meme.html tomtom.html tomtom-output-format.html transfac2meme.html transfac-format.html uniprobe2meme.html update-sequence-db.html ismb94.pdf download.html download-index.html general-faq.html install.html scripting.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/doc/meme-suite-5.3.3/doc' make[5]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/doc' Making install in etc make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/share/meme-suite' /usr/bin/ginstall -c -m 644 db_general.csv db_other_genomes.csv alphabet_utilities.js ame_icon.png ame_template.css ame_template.js block_diagram.css block_diagram.js centrimo_graph.js centrimo_icon.png centrimo_template.css centrimo_template.js tgene_doc.js tgene_icon.png tgene_template.css tgene_template.js cisml.css cisml-to-gff.xsl cisml-to-gff3.xsl cisml-to-html.xsl cisml-to-text.xsl delay_draw.js dreme_icon.png dreme_template.css dreme_template.js eps_context.js generate_js_wrapped_template.pl generate_xsl_icons.pl hmm-text.xsl job_status.tmpl mast_icon.png mast_template.css mast_template.js mcast_icon.png mcast_template.css mcast_template.js meme.css meme_icon.png meme_template.css meme_template.js '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/share/meme-suite' /usr/bin/ginstall -c -m 644 momo_icon.png momo_template.css momo_template.js memechip_icon.png meme-chip_template.css meme-chip_template.js motif_logo.js new_icon.png prior1.plib prior30.plib set_maxtime.pl simple-shared-doc.js spamo_graph.js spamo_icon.png spamo_template.css spamo_template.js streme_template.css streme_template.js streme_icon.png template.eps tomtom_icon.png tomtom_template.css tomtom_template.js utilities.js ame_template.html beadstring.xsl centrimo_template.html tgene_template.html constants.js constants.xsl constants.js.xsl dreme_template.html gomo-to-html.xsl icons.xsl logging.conf mast_template.html mcast_template.html meme.css.xsl meme_template.html momo_template.html '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/share/meme-suite' /usr/bin/ginstall -c -m 644 meme-chip_template.html motif_logo_template.js simple-shared-doc.js.xsl spamo_template.html streme_template.html tomtom_template.html utilities.js.xsl '/usr/src/slapt-src/academic/meme-suite/package-meme-suite/usr/share/meme-suite' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/etc' Making install in website make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' Making install in templates make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website/templates' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3/website' make[2]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[3]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[3]: Nothing to be done for 'install-exec-am'. make install-data-hook make[4]: Entering directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' mkdir -p /usr/src/slapt-src/academic/meme-suite/package-meme-suite/var/lib/meme-suite make[4]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[3]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[2]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' make[1]: Leaving directory '/usr/src/slapt-src/academic/meme-suite/meme-5.3.3' Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/meme-suite/meme-suite-5.3.3-i586-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/ame usr/bin/centrimo usr/bin/dreme usr/bin/dust usr/bin/enr usr/bin/fimo usr/bin/glam2 usr/bin/glam2scan usr/bin/gomo usr/bin/mast usr/bin/mcast usr/bin/meme usr/bin/meme-chip usr/bin/momo usr/bin/purge usr/bin/spamo usr/bin/streme usr/bin/tgene usr/bin/tomtom usr/doc/ usr/doc/meme-suite-5.3.3/ usr/doc/meme-suite-5.3.3/AUTHORS usr/doc/meme-suite-5.3.3/COPYING usr/doc/meme-suite-5.3.3/INSTALL usr/doc/meme-suite-5.3.3/README usr/doc/meme-suite-5.3.3/README.DATABASES usr/doc/meme-suite-5.3.3/README.TESTS usr/doc/meme-suite-5.3.3/References usr/doc/meme-suite-5.3.3/doc/ usr/doc/meme-suite-5.3.3/doc/GLAM2_method.pdf usr/doc/meme-suite-5.3.3/doc/alphabet-format.html usr/doc/meme-suite-5.3.3/doc/alphabets.html usr/doc/meme-suite-5.3.3/doc/alphtype.html usr/doc/meme-suite-5.3.3/doc/ama-qvalues.html usr/doc/meme-suite-5.3.3/doc/ama.html usr/doc/meme-suite-5.3.3/doc/ame-output-format.html usr/doc/meme-suite-5.3.3/doc/ame-tutorial.html usr/doc/meme-suite-5.3.3/doc/ame.html usr/doc/meme-suite-5.3.3/doc/authors.html usr/doc/meme-suite-5.3.3/doc/beadstring.html usr/doc/meme-suite-5.3.3/doc/bed-format.html usr/doc/meme-suite-5.3.3/doc/beeml2meme.html usr/doc/meme-suite-5.3.3/doc/bfile-format.html usr/doc/meme-suite-5.3.3/doc/centrimo-output-format.html usr/doc/meme-suite-5.3.3/doc/centrimo-tutorial.html usr/doc/meme-suite-5.3.3/doc/centrimo.html usr/doc/meme-suite-5.3.3/doc/ceqlogo.html usr/doc/meme-suite-5.3.3/doc/chen2meme.html usr/doc/meme-suite-5.3.3/doc/cite.html usr/doc/meme-suite-5.3.3/doc/clustalw-format.html usr/doc/meme-suite-5.3.3/doc/clustalw2fasta.html usr/doc/meme-suite-5.3.3/doc/clustalw2phylip.html usr/doc/meme-suite-5.3.3/doc/compute-prior-dist.html usr/doc/meme-suite-5.3.3/doc/compute-uniform-priors.html usr/doc/meme-suite-5.3.3/doc/copyright.html usr/doc/meme-suite-5.3.3/doc/create-priors.html usr/doc/meme-suite-5.3.3/doc/css/ usr/doc/meme-suite-5.3.3/doc/css/menu.css usr/doc/meme-suite-5.3.3/doc/css/style.css usr/doc/meme-suite-5.3.3/doc/dmix-format.html usr/doc/meme-suite-5.3.3/doc/download-index.html usr/doc/meme-suite-5.3.3/doc/download.html usr/doc/meme-suite-5.3.3/doc/draw-mhmm.html usr/doc/meme-suite-5.3.3/doc/dreme-tutorial.html usr/doc/meme-suite-5.3.3/doc/dreme.html usr/doc/meme-suite-5.3.3/doc/dust.html usr/doc/meme-suite-5.3.3/doc/elm2meme.html usr/doc/meme-suite-5.3.3/doc/enr.html usr/doc/meme-suite-5.3.3/doc/examples/ usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files/ame.html usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files/ame.tsv usr/doc/meme-suite-5.3.3/doc/examples/ame_example_output_files/sequences.tsv usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files/centrimo.html usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files/centrimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/centrimo_example_output_files/site_counts.txt usr/doc/meme-suite-5.3.3/doc/examples/compute_prior_dist_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/compute_prior_dist_example_output_files/prior.dist.txt usr/doc/meme-suite-5.3.3/doc/examples/create_examples.pl.in usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/dreme.html usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/dreme.txt usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/dreme.xml usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m01nc_CCMCRCCC.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m01rc_GGGYGKGG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m02nc_BTTATCW.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m02rc_WGATAAV.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m03nc_MCRCCCA.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m03rc_TGGGYGK.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m04nc_RARGAAA.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m04rc_TTTCYTY.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m05nc_AKAAAM.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m05rc_KTTTMT.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m06nc_CTGTSTS.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m06rc_SASACAG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m07nc_AGGGCGK.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m07rc_MCGCCCT.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m08nc_CCTKCCY.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m08rc_RGGMAGG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m09nc_TTAAAAW.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m09rc_WTTTTAA.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m10nc_AAATAH.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m10rc_DTATTT.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m11nc_CATYTCC.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m11rc_GGARATG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m12nc_CAGMCAC.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m12rc_GTGKCTG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m13nc_CACAGY.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m13rc_RCTGTG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m14nc_CTGGRGA.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m14rc_TCYCCAG.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m15nc_SACGTGA.png usr/doc/meme-suite-5.3.3/doc/examples/dreme_example_output_files/m15rc_TCACGTS.png usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/ usr/doc/meme-suite-5.3.3/doc/examples/example-datasets.mk usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/At.faa usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/At.glam2 usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/Klf1.fna usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/Klf1.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/P300.chr21.bed usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/STRGGTCAN.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/adh.faa usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/adh.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/crp0.fna usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/crp0.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/dpinteract.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/dpinteract_subset.meme usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/lex0.fna usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/mm9_tss_500bp_sampled_1000.fna usr/doc/meme-suite-5.3.3/doc/examples/example-datasets/some_vertebrates.meme usr/doc/meme-suite-5.3.3/doc/examples/examples.mk usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/fimo_example_output_files/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/glam2-aa-alph.txt usr/doc/meme-suite-5.3.3/doc/examples/glam2-dna-alph.txt usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/glam2.html usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/glam2.meme usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/glam2.txt usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo1.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo1.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo10.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo10.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo2.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo2.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo3.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo3.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo4.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo4.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo5.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo5.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo6.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo6.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo7.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo7.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo8.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo8.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo9.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo9.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc1.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc1.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc10.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc10.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc2.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc2.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc3.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc3.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc4.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc4.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc5.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc5.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc6.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc6.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc7.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc7.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc8.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc8.png usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc9.eps usr/doc/meme-suite-5.3.3/doc/examples/glam2_example_output_files/logo_ssc9.png usr/doc/meme-suite-5.3.3/doc/examples/glam2scan_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/glam2scan_example_output_files/glam2scan.html usr/doc/meme-suite-5.3.3/doc/examples/glam2scan_example_output_files/glam2scan.txt usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/gomo.html usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/gomo.tsv usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/gomo.xml usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res/ usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res/logo1.png usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res/logo2.png usr/doc/meme-suite-5.3.3/doc/examples/gomo_example_output_files/res/logo3.png usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files/mast.html usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files/mast.txt usr/doc/meme-suite-5.3.3/doc/examples/mast_example_output_files/mast.xml usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/mcast.gff usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/mcast.html usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/mcast.tsv usr/doc/meme-suite-5.3.3/doc/examples/mcast_example_output_files/mcast.xml usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo1.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo1.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo2.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo2.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo3.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo3.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc1.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc1.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc2.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc2.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc3.eps usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/logo_rc3.png usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/meme.html usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/meme.txt usr/doc/meme-suite-5.3.3/doc/examples/meme_example_output_files/meme.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/Klf1.fna usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/background usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/centrimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/centrimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/centrimo_out/site_counts.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/combined.meme usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/dreme.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m01nc_MCRCCCW.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m01rc_WGGGYGK.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m02nc_TTATCW.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_out/m02rc_WGATAA.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/dreme_tomtom_out/tomtom.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_1/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_2/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_3/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_4/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_5/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/cisml.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.gff usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/fimo_out_6/fimo.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme-chip.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo1.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo1.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo2.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo2.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo3.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo3.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc1.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc1.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc2.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc2.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc3.eps usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/logo_rc3.png usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_out/meme.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/meme_tomtom_out/tomtom.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/motif_alignment.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/progress_log.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/seqs-centered usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/seqs-shuffled usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_1/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_2/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_3/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_4/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_5/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/spamo_out_6/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.txt usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_out/streme.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/ usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.html usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.tsv usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/streme_tomtom_out/tomtom.xml usr/doc/meme-suite-5.3.3/doc/examples/memechip_example_output_files/summary.tsv usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_Dxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_Pxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_S79.9_xxxxxK.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/Kxxxxx_Y79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/RxxSxx_S79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/momo.html usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/momo.tsv usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/momo.txt usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xLxxxx_S79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxKRxx_S79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxLxxx_T79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxRxx_S79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxNx_S79.9_xDExxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxG_S79.9_xxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxH_S79.9_Dxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_DxExxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_Dxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_NExxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_Pxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xDxxKx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xDxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xExxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_S79.9_xNxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_T79.9_Pxxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/momo_example_output_files/xxxxxx_T79.9_xDxxxx.png usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/cisml-to-html.xsl usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/cisml.css usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/motiph.gff usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/motiph.html usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/motiph.txt usr/doc/meme-suite-5.3.3/doc/examples/motiph_example_output_files/motiph.xml usr/doc/meme-suite-5.3.3/doc/examples/prior30.plib usr/doc/meme-suite-5.3.3/doc/examples/sample-dna-aln.glam2 usr/doc/meme-suite-5.3.3/doc/examples/sample-dna-motif.meme usr/doc/meme-suite-5.3.3/doc/examples/sample-protein-aln.glam2 usr/doc/meme-suite-5.3.3/doc/examples/sample-protein-motif.meme usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/ usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/FimoClient.pl usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/FimoClient.py usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/MemeClient.pl usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/MemeClient.py usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/crp0.fasta usr/doc/meme-suite-5.3.3/doc/examples/sample_opal_scripts/crp0.meme.xml usr/doc/meme-suite-5.3.3/doc/examples/small-tide-mod.txt usr/doc/meme-suite-5.3.3/doc/examples/spamo_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/spamo_example_output_files/spamo.html usr/doc/meme-suite-5.3.3/doc/examples/spamo_example_output_files/spamo.tsv usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files/streme.html usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files/streme.txt usr/doc/meme-suite-5.3.3/doc/examples/streme_example_output_files/streme.xml usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/HistLev+noise.H3k27ac.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/HistLev+noise.H3k4me3.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/HistLev.H3k27ac.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/HistLev.H3k4me3.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/TrExp+noise.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/TrExp.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/links.tsv usr/doc/meme-suite-5.3.3/doc/examples/tgene_example_output_files/tgene.html usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files/ usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files/tomtom.html usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files/tomtom.tsv usr/doc/meme-suite-5.3.3/doc/examples/tomtom_example_output_files/tomtom.xml usr/doc/meme-suite-5.3.3/doc/fasta-center.html usr/doc/meme-suite-5.3.3/doc/fasta-dinucleotide-shuffle.html usr/doc/meme-suite-5.3.3/doc/fasta-fetch.html usr/doc/meme-suite-5.3.3/doc/fasta-format.html usr/doc/meme-suite-5.3.3/doc/fasta-get-markov.html usr/doc/meme-suite-5.3.3/doc/fasta-grep.html usr/doc/meme-suite-5.3.3/doc/fasta-hamming-enrich.html usr/doc/meme-suite-5.3.3/doc/fasta-io.html usr/doc/meme-suite-5.3.3/doc/fasta-make-index.html usr/doc/meme-suite-5.3.3/doc/fasta-most.html usr/doc/meme-suite-5.3.3/doc/fasta-shuffle-letters.html usr/doc/meme-suite-5.3.3/doc/fasta-subsample.html usr/doc/meme-suite-5.3.3/doc/fasta-unique-names.html usr/doc/meme-suite-5.3.3/doc/fimo-output-format.html usr/doc/meme-suite-5.3.3/doc/fimo-tutorial.html usr/doc/meme-suite-5.3.3/doc/fimo.html usr/doc/meme-suite-5.3.3/doc/fisher_exact.html usr/doc/meme-suite-5.3.3/doc/fitevd.html usr/doc/meme-suite-5.3.3/doc/gendb.html usr/doc/meme-suite-5.3.3/doc/general-faq.html usr/doc/meme-suite-5.3.3/doc/getsize.html usr/doc/meme-suite-5.3.3/doc/glam2.html usr/doc/meme-suite-5.3.3/doc/glam2_alphabet.html usr/doc/meme-suite-5.3.3/doc/glam2_tut.html usr/doc/meme-suite-5.3.3/doc/glam2format.html usr/doc/meme-suite-5.3.3/doc/glam2mask.html usr/doc/meme-suite-5.3.3/doc/glam2scan.html usr/doc/meme-suite-5.3.3/doc/godag-format.html usr/doc/meme-suite-5.3.3/doc/gomo-output-format.html usr/doc/meme-suite-5.3.3/doc/gomo.html usr/doc/meme-suite-5.3.3/doc/gomo_highlight.html usr/doc/meme-suite-5.3.3/doc/images/ usr/doc/meme-suite-5.3.3/doc/images/UWlogo150p.gif usr/doc/meme-suite-5.3.3/doc/images/ame_icon.png usr/doc/meme-suite-5.3.3/doc/images/centrimo_icon.png usr/doc/meme-suite-5.3.3/doc/images/dreme_icon.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.1.anr.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.1.oops.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.1.zoops.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.6.anr.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.6.oops.png usr/doc/meme-suite-5.3.3/doc/images/exp28b.6.zoops.png usr/doc/meme-suite-5.3.3/doc/images/exp28d.kmers.png usr/doc/meme-suite-5.3.3/doc/images/exp28d.triples.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.dna.memory.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.dna.time.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.protein.memory.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.protein.time.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.rna.memory.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/exp4b.rna.time.seqlen.png usr/doc/meme-suite-5.3.3/doc/images/fimo_icon.png usr/doc/meme-suite-5.3.3/doc/images/glam2_icon.png usr/doc/meme-suite-5.3.3/doc/images/glam2scan_icon.png usr/doc/meme-suite-5.3.3/doc/images/gomo_icon.png usr/doc/meme-suite-5.3.3/doc/images/gtscan_icon.png usr/doc/meme-suite-5.3.3/doc/images/improved_icon.png usr/doc/meme-suite-5.3.3/doc/images/mast_icon.png usr/doc/meme-suite-5.3.3/doc/images/mcast_icon.png usr/doc/meme-suite-5.3.3/doc/images/meme_icon.png usr/doc/meme-suite-5.3.3/doc/images/memechip_icon.png usr/doc/meme-suite-5.3.3/doc/images/memesuite_icon.ico usr/doc/meme-suite-5.3.3/doc/images/memesuite_icon.png usr/doc/meme-suite-5.3.3/doc/images/momo_icon.png usr/doc/meme-suite-5.3.3/doc/images/new_icon.png usr/doc/meme-suite-5.3.3/doc/images/spamo_icon.png usr/doc/meme-suite-5.3.3/doc/images/streme_icon.png usr/doc/meme-suite-5.3.3/doc/images/tgene_icon.png usr/doc/meme-suite-5.3.3/doc/images/tomtom_icon.png usr/doc/meme-suite-5.3.3/doc/images/ucsd_logo.png usr/doc/meme-suite-5.3.3/doc/images/unr_logo.png usr/doc/meme-suite-5.3.3/doc/images/uq_logo.png usr/doc/meme-suite-5.3.3/doc/images/webserver_schema.png usr/doc/meme-suite-5.3.3/doc/install.html usr/doc/meme-suite-5.3.3/doc/ismb94.pdf usr/doc/meme-suite-5.3.3/doc/iupac.html usr/doc/meme-suite-5.3.3/doc/iupac2meme.html usr/doc/meme-suite-5.3.3/doc/jaspar2meme.html usr/doc/meme-suite-5.3.3/doc/js/ usr/doc/meme-suite-5.3.3/doc/js/Markdown.Converter.LICENSE usr/doc/meme-suite-5.3.3/doc/js/Markdown.Converter.js usr/doc/meme-suite-5.3.3/doc/js/centrimo_graph.js usr/doc/meme-suite-5.3.3/doc/js/constants.js usr/doc/meme-suite-5.3.3/doc/js/constants.js.in usr/doc/meme-suite-5.3.3/doc/js/delay_draw.js usr/doc/meme-suite-5.3.3/doc/js/eps_context.js usr/doc/meme-suite-5.3.3/doc/js/manual.js usr/doc/meme-suite-5.3.3/doc/js/menu-configure.js usr/doc/meme-suite-5.3.3/doc/js/menu-data.js usr/doc/meme-suite-5.3.3/doc/js/menu-path.js usr/doc/meme-suite-5.3.3/doc/js/menu.js usr/doc/meme-suite-5.3.3/doc/js/motif_logo.js usr/doc/meme-suite-5.3.3/doc/js/shared-doc.js usr/doc/meme-suite-5.3.3/doc/js/simple-shared-doc.js usr/doc/meme-suite-5.3.3/doc/js/spamo_graph.js usr/doc/meme-suite-5.3.3/doc/js/tgene_doc.js usr/doc/meme-suite-5.3.3/doc/js/utilities.js usr/doc/meme-suite-5.3.3/doc/log-hmm.html usr/doc/meme-suite-5.3.3/doc/mast.html usr/doc/meme-suite-5.3.3/doc/matrix2meme.html usr/doc/meme-suite-5.3.3/doc/mcast-output-format.html usr/doc/meme-suite-5.3.3/doc/mcast.html usr/doc/meme-suite-5.3.3/doc/meme-chip-output-format.html usr/doc/meme-suite-5.3.3/doc/meme-chip.html usr/doc/meme-suite-5.3.3/doc/meme-format.html usr/doc/meme-suite-5.3.3/doc/meme-get-motif.html usr/doc/meme-suite-5.3.3/doc/meme-rename.html usr/doc/meme-suite-5.3.3/doc/meme.html usr/doc/meme-suite-5.3.3/doc/meme2alph.html usr/doc/meme-suite-5.3.3/doc/meme2images.html usr/doc/meme-suite-5.3.3/doc/meme2meme.html usr/doc/meme-suite-5.3.3/doc/mhmm-format.html usr/doc/meme-suite-5.3.3/doc/mhmm.html usr/doc/meme-suite-5.3.3/doc/mhmm2html.html usr/doc/meme-suite-5.3.3/doc/mhmme.html usr/doc/meme-suite-5.3.3/doc/mhmms.html usr/doc/meme-suite-5.3.3/doc/mhmmscan-format.html usr/doc/meme-suite-5.3.3/doc/mhmmscan.html usr/doc/meme-suite-5.3.3/doc/momo-output-format.html usr/doc/meme-suite-5.3.3/doc/momo.html usr/doc/meme-suite-5.3.3/doc/motif-consensus.html usr/doc/meme-suite-5.3.3/doc/motif-shuffle-columns.html usr/doc/meme-suite-5.3.3/doc/motif_conversion.html usr/doc/meme-suite-5.3.3/doc/motiph.html usr/doc/meme-suite-5.3.3/doc/news.txt usr/doc/meme-suite-5.3.3/doc/nmica2meme.html usr/doc/meme-suite-5.3.3/doc/overview.html usr/doc/meme-suite-5.3.3/doc/pmp_bf.html usr/doc/meme-suite-5.3.3/doc/prior30.plib usr/doc/meme-suite-5.3.3/doc/priority2meme.html usr/doc/meme-suite-5.3.3/doc/psm-format.html usr/doc/meme-suite-5.3.3/doc/psp-format.html usr/doc/meme-suite-5.3.3/doc/psp-gen.html usr/doc/meme-suite-5.3.3/doc/purge.html usr/doc/meme-suite-5.3.3/doc/qvalue.html usr/doc/meme-suite-5.3.3/doc/reconcile-tree-alignment.html usr/doc/meme-suite-5.3.3/doc/reduce-alignment.html usr/doc/meme-suite-5.3.3/doc/release-notes.html usr/doc/meme-suite-5.3.3/doc/remove-alignment-gaps.html usr/doc/meme-suite-5.3.3/doc/rna2meme.html usr/doc/meme-suite-5.3.3/doc/scpd2meme.html usr/doc/meme-suite-5.3.3/doc/scripting.html usr/doc/meme-suite-5.3.3/doc/server_down.html usr/doc/meme-suite-5.3.3/doc/shadow.html usr/doc/meme-suite-5.3.3/doc/sites2meme.html usr/doc/meme-suite-5.3.3/doc/spamo-output-format.html usr/doc/meme-suite-5.3.3/doc/spamo.html usr/doc/meme-suite-5.3.3/doc/streme-tutorial.html usr/doc/meme-suite-5.3.3/doc/streme.html usr/doc/meme-suite-5.3.3/doc/taipale2meme.html usr/doc/meme-suite-5.3.3/doc/tamo2meme.html usr/doc/meme-suite-5.3.3/doc/tgene-output-format.html usr/doc/meme-suite-5.3.3/doc/tgene-tutorial.html usr/doc/meme-suite-5.3.3/doc/tgene.html usr/doc/meme-suite-5.3.3/doc/tomtom-output-format.html usr/doc/meme-suite-5.3.3/doc/tomtom.html usr/doc/meme-suite-5.3.3/doc/transfac-format.html usr/doc/meme-suite-5.3.3/doc/transfac2meme.html usr/doc/meme-suite-5.3.3/doc/uniprobe2meme.html usr/doc/meme-suite-5.3.3/doc/update-sequence-db.html usr/doc/meme-suite-5.3.3/meme-suite.SlackBuild usr/lib/ usr/lib/meme-suite/ usr/lib/meme-suite/perl/ usr/lib/meme-suite/perl/Alphabet.pm usr/lib/meme-suite/perl/CheckingSAX.pm usr/lib/meme-suite/perl/DremeSAX.pm usr/lib/meme-suite/perl/ExecUtils.pm usr/lib/meme-suite/perl/Globals.pm usr/lib/meme-suite/perl/HtmlMonolithWr.pm usr/lib/meme-suite/perl/JsonRdr.pm usr/lib/meme-suite/perl/JsonWr.pm usr/lib/meme-suite/perl/MastSAX.pm usr/lib/meme-suite/perl/MemeSAX.pm usr/lib/meme-suite/perl/MemeWebUtils.pm usr/lib/meme-suite/perl/MotifInDremeXML.pm usr/lib/meme-suite/perl/MotifInMemeXML.pm usr/lib/meme-suite/perl/MotifInStremeXML.pm usr/lib/meme-suite/perl/MotifUtils.pm usr/lib/meme-suite/perl/PriorUtils.pm usr/lib/meme-suite/perl/ReadFastaFile.pm usr/lib/meme-suite/perl/StatusPage.pm usr/lib/meme-suite/perl/StremeSAX.pm usr/lib/meme-suite/perl/TomtomSAX.pm usr/lib/meme-suite/python/ usr/lib/meme-suite/python/alphabet.py usr/lib/meme-suite/python/alphabet_py3.py usr/lib/meme-suite/python/fasta-dinucleotide-shuffle.py usr/lib/meme-suite/python/fasta-hamming-enrich.py usr/lib/meme-suite/python/hypergeometric.py usr/lib/meme-suite/python/hypergeometric_py3.py usr/lib/meme-suite/python/sequence.py usr/lib/meme-suite/python/sequence_py3.py usr/libexec/ usr/libexec/meme-suite/ usr/libexec/meme-suite/alphtype usr/libexec/meme-suite/ama usr/libexec/meme-suite/ama-qvalues usr/libexec/meme-suite/beeml2meme usr/libexec/meme-suite/ceqlogo usr/libexec/meme-suite/chen2meme usr/libexec/meme-suite/clustalw2fasta usr/libexec/meme-suite/clustalw2phylip usr/libexec/meme-suite/compute-prior-dist usr/libexec/meme-suite/compute-uniform-priors usr/libexec/meme-suite/create-priors usr/libexec/meme-suite/dreme_xml_to_html usr/libexec/meme-suite/dreme_xml_to_txt usr/libexec/meme-suite/dtc usr/libexec/meme-suite/elm2meme usr/libexec/meme-suite/fasta-center usr/libexec/meme-suite/fasta-dinucleotide-shuffle usr/libexec/meme-suite/fasta-fetch usr/libexec/meme-suite/fasta-from-bed usr/libexec/meme-suite/fasta-get-markov usr/libexec/meme-suite/fasta-grep usr/libexec/meme-suite/fasta-hamming-enrich usr/libexec/meme-suite/fasta-make-index usr/libexec/meme-suite/fasta-most usr/libexec/meme-suite/fasta-re-match usr/libexec/meme-suite/fasta-shuffle-letters usr/libexec/meme-suite/fasta-subsample usr/libexec/meme-suite/fasta-unique-names usr/libexec/meme-suite/fisher_exact usr/libexec/meme-suite/fitevd usr/libexec/meme-suite/gendb usr/libexec/meme-suite/getsize usr/libexec/meme-suite/glam2format usr/libexec/meme-suite/glam2html usr/libexec/meme-suite/glam2mask usr/libexec/meme-suite/glam2psfm usr/libexec/meme-suite/glam2scan2html usr/libexec/meme-suite/gomo_highlight usr/libexec/meme-suite/hart2meme-bkg usr/libexec/meme-suite/hartemink2psp usr/libexec/meme-suite/import-html-template usr/libexec/meme-suite/index-fasta-file usr/libexec/meme-suite/iupac2meme usr/libexec/meme-suite/jaspar2meme usr/libexec/meme-suite/llr usr/libexec/meme-suite/mast_xml_to_html usr/libexec/meme-suite/mast_xml_to_txt usr/libexec/meme-suite/matrix2meme usr/libexec/meme-suite/meme-chip_html_to_tsv usr/libexec/meme-suite/meme-get-motif usr/libexec/meme-suite/meme-rename usr/libexec/meme-suite/meme2alph usr/libexec/meme-suite/meme2images usr/libexec/meme-suite/meme2meme usr/libexec/meme-suite/meme_xml_to_html usr/libexec/meme-suite/motif-shuffle-columns usr/libexec/meme-suite/motiph usr/libexec/meme-suite/nmica2meme usr/libexec/meme-suite/plotgen usr/libexec/meme-suite/pmp_bf usr/libexec/meme-suite/priority2meme usr/libexec/meme-suite/psp-gen usr/libexec/meme-suite/qvalue usr/libexec/meme-suite/ramen usr/libexec/meme-suite/ranksum_test usr/libexec/meme-suite/reconcile-tree-alignment usr/libexec/meme-suite/reduce-alignment usr/libexec/meme-suite/remove-alignment-gaps usr/libexec/meme-suite/rna2meme usr/libexec/meme-suite/rsat-retrieve-seq usr/libexec/meme-suite/rsat-supported-organisms usr/libexec/meme-suite/scpd2meme usr/libexec/meme-suite/sd usr/libexec/meme-suite/sites2meme usr/libexec/meme-suite/streme_xml_to_html usr/libexec/meme-suite/taipale2meme usr/libexec/meme-suite/tamo2meme usr/libexec/meme-suite/tomtom_xml_to_html usr/libexec/meme-suite/transfac2meme usr/libexec/meme-suite/uniprobe2meme usr/share/ usr/share/meme-suite/ usr/share/meme-suite/alphabet_utilities.js usr/share/meme-suite/ame_icon.png usr/share/meme-suite/ame_template.css usr/share/meme-suite/ame_template.html usr/share/meme-suite/ame_template.js usr/share/meme-suite/beadstring.xsl usr/share/meme-suite/block_diagram.css usr/share/meme-suite/block_diagram.js usr/share/meme-suite/centrimo_graph.js usr/share/meme-suite/centrimo_icon.png usr/share/meme-suite/centrimo_template.css usr/share/meme-suite/centrimo_template.html usr/share/meme-suite/centrimo_template.js usr/share/meme-suite/cisml-to-gff.xsl usr/share/meme-suite/cisml-to-gff3.xsl usr/share/meme-suite/cisml-to-html.xsl usr/share/meme-suite/cisml-to-text.xsl usr/share/meme-suite/cisml.css usr/share/meme-suite/constants.js usr/share/meme-suite/constants.js.xsl usr/share/meme-suite/constants.xsl usr/share/meme-suite/db_general.csv usr/share/meme-suite/db_other_genomes.csv usr/share/meme-suite/delay_draw.js usr/share/meme-suite/dreme_icon.png usr/share/meme-suite/dreme_template.css usr/share/meme-suite/dreme_template.html usr/share/meme-suite/dreme_template.js usr/share/meme-suite/eps_context.js usr/share/meme-suite/generate_js_wrapped_template.pl usr/share/meme-suite/generate_xsl_icons.pl usr/share/meme-suite/gomo-to-html.xsl usr/share/meme-suite/hmm-text.xsl usr/share/meme-suite/icons.xsl usr/share/meme-suite/job_status.tmpl usr/share/meme-suite/logging.conf usr/share/meme-suite/mast_icon.png usr/share/meme-suite/mast_template.css usr/share/meme-suite/mast_template.html usr/share/meme-suite/mast_template.js usr/share/meme-suite/mcast_icon.png usr/share/meme-suite/mcast_template.css usr/share/meme-suite/mcast_template.html usr/share/meme-suite/mcast_template.js usr/share/meme-suite/meme-chip_template.css usr/share/meme-suite/meme-chip_template.html usr/share/meme-suite/meme-chip_template.js usr/share/meme-suite/meme.css usr/share/meme-suite/meme.css.xsl usr/share/meme-suite/meme_icon.png usr/share/meme-suite/meme_template.css usr/share/meme-suite/meme_template.html usr/share/meme-suite/meme_template.js usr/share/meme-suite/memechip_icon.png usr/share/meme-suite/momo_icon.png usr/share/meme-suite/momo_template.css usr/share/meme-suite/momo_template.html usr/share/meme-suite/momo_template.js usr/share/meme-suite/motif_logo.js usr/share/meme-suite/motif_logo_template.js usr/share/meme-suite/new_icon.png usr/share/meme-suite/prior1.plib usr/share/meme-suite/prior30.plib usr/share/meme-suite/set_maxtime.pl usr/share/meme-suite/simple-shared-doc.js usr/share/meme-suite/simple-shared-doc.js.xsl usr/share/meme-suite/spamo_graph.js usr/share/meme-suite/spamo_icon.png usr/share/meme-suite/spamo_template.css usr/share/meme-suite/spamo_template.html usr/share/meme-suite/spamo_template.js usr/share/meme-suite/streme_icon.png usr/share/meme-suite/streme_template.css usr/share/meme-suite/streme_template.html usr/share/meme-suite/streme_template.js usr/share/meme-suite/template.eps usr/share/meme-suite/tgene_doc.js usr/share/meme-suite/tgene_icon.png usr/share/meme-suite/tgene_template.css usr/share/meme-suite/tgene_template.html usr/share/meme-suite/tgene_template.js usr/share/meme-suite/tomtom_icon.png usr/share/meme-suite/tomtom_template.css usr/share/meme-suite/tomtom_template.html usr/share/meme-suite/tomtom_template.js usr/share/meme-suite/utilities.js usr/share/meme-suite/utilities.js.xsl var/ var/lib/ var/lib/meme-suite/ var/lib/meme-suite/fasta_databases/ var/lib/meme-suite/gomo_databases/ var/lib/meme-suite/motif_databases/ var/lib/meme-suite/tgene_databases/ Slackware package /usr/src/slapt-src/academic/meme-suite/meme-suite-5.3.3-i586-1salix15.0.txz created. Installing package meme-suite-5.3.3-i586-1salix15.0... | meme-suite (Motif based sequence analysis tools) | | The MEME suite: motif based sequence analysis tools | | The MEME suite provides tools for discovering and using protein | and DNA sequence motifs. A motif is a pattern of nucleotides or | amino acids that appears repeatedly in a group of related DNA or | protein sequences. | | Home: http://meme-suite.org/ | | |