The following packages will be installed: primer3 Fetching README... 0%100%100%100%100%100%Done Fetching References... 0%100%100%100%100%100%Done Fetching gcc-7.patch... 0%100%100%100%100%100%Done Fetching man1/ntdpal.1... 0%100%100%100%100%100%Done Fetching man1/ntthal.1... 0%100%100%100%100%100%Done Fetching man1/oligotm.1... 0%100%100%100%100%100%Done Fetching man1/primer3_core.1... 0%100%100%100%100%100%Done Fetching primer3.SlackBuild... 0%100%100%100%100%100%Done Fetching primer3.info... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done primer3-2.4.0/ primer3-2.4.0/.gitignore primer3-2.4.0/LICENSE primer3-2.4.0/README.md primer3-2.4.0/cmp_settings.pl primer3-2.4.0/create_test_folders.pl primer3-2.4.0/example primer3-2.4.0/kmer_lists/ primer3-2.4.0/kmer_lists/homo_sapiens_11.list primer3-2.4.0/kmer_lists/homo_sapiens_16.list primer3-2.4.0/kmer_lists/mus_musculus_11.list primer3-2.4.0/kmer_lists/mus_musculus_16.list primer3-2.4.0/kmer_lists/readme.txt primer3-2.4.0/settings_files/ primer3-2.4.0/settings_files/p3_th_settings.txt primer3-2.4.0/settings_files/primer3_v1_1_4_default_settings.txt primer3-2.4.0/settings_files/primer3web_v0_4_0_default_settings.txt primer3-2.4.0/settings_files/primer3web_v3_0_0_default_settings.txt primer3-2.4.0/settings_files/primer3web_v4_0_0_default_settings.txt primer3-2.4.0/src/ primer3-2.4.0/src/LICENSE primer3-2.4.0/src/Makefile primer3-2.4.0/src/dpal.c primer3-2.4.0/src/dpal.h primer3-2.4.0/src/format_output.c primer3-2.4.0/src/format_output.h primer3-2.4.0/src/humrep_and_simple.txt primer3-2.4.0/src/libprimer3.c primer3-2.4.0/src/libprimer3.h primer3-2.4.0/src/long_seq_tm_test_main.c primer3-2.4.0/src/masker.c primer3-2.4.0/src/masker.h primer3-2.4.0/src/masker_main.c primer3-2.4.0/src/ntdpal_main.c primer3-2.4.0/src/oligotm.c primer3-2.4.0/src/oligotm.h primer3-2.4.0/src/oligotm_main.c primer3-2.4.0/src/p3_seq_lib.c primer3-2.4.0/src/p3_seq_lib.h primer3-2.4.0/src/paranoid_tests.sh primer3-2.4.0/src/primer3_boulder_main.c primer3-2.4.0/src/primer3_config/ primer3-2.4.0/src/primer3_config/dangle.dh primer3-2.4.0/src/primer3_config/dangle.ds primer3-2.4.0/src/primer3_config/interpretations/ primer3-2.4.0/src/primer3_config/interpretations/dangle_i.dh primer3-2.4.0/src/primer3_config/interpretations/dangle_i.ds primer3-2.4.0/src/primer3_config/interpretations/loops_i.dh primer3-2.4.0/src/primer3_config/interpretations/loops_i.ds primer3-2.4.0/src/primer3_config/interpretations/stack_i.dh primer3-2.4.0/src/primer3_config/interpretations/stack_i.ds primer3-2.4.0/src/primer3_config/interpretations/stackmm_i_mm.dh primer3-2.4.0/src/primer3_config/interpretations/stackmm_i_mm.ds primer3-2.4.0/src/primer3_config/interpretations/tetraloop_i.dh primer3-2.4.0/src/primer3_config/interpretations/tetraloop_i.ds primer3-2.4.0/src/primer3_config/interpretations/triloop_i.dh primer3-2.4.0/src/primer3_config/interpretations/triloop_i.ds primer3-2.4.0/src/primer3_config/interpretations/tstack2_i.dh primer3-2.4.0/src/primer3_config/interpretations/tstack2_i.ds primer3-2.4.0/src/primer3_config/interpretations/tstack_i.dh primer3-2.4.0/src/primer3_config/interpretations/tstack_i.ds primer3-2.4.0/src/primer3_config/interpretations/tstack_tm_inf_i.dh primer3-2.4.0/src/primer3_config/interpretations/tstack_tm_inf_i.ds primer3-2.4.0/src/primer3_config/loops.dh primer3-2.4.0/src/primer3_config/loops.ds primer3-2.4.0/src/primer3_config/stack.dh primer3-2.4.0/src/primer3_config/stack.ds primer3-2.4.0/src/primer3_config/stackmm.dh primer3-2.4.0/src/primer3_config/stackmm.ds primer3-2.4.0/src/primer3_config/tetraloop.dh primer3-2.4.0/src/primer3_config/tetraloop.ds primer3-2.4.0/src/primer3_config/triloop.dh primer3-2.4.0/src/primer3_config/triloop.ds primer3-2.4.0/src/primer3_config/tstack.dh primer3-2.4.0/src/primer3_config/tstack2.dh primer3-2.4.0/src/primer3_config/tstack2.ds primer3-2.4.0/src/primer3_config/tstack_tm_inf.ds primer3-2.4.0/src/primer3_manual.htm primer3-2.4.0/src/print_boulder.c primer3-2.4.0/src/print_boulder.h primer3-2.4.0/src/read_boulder.c primer3-2.4.0/src/read_boulder.h primer3-2.4.0/src/release_notes.txt primer3-2.4.0/src/thal.c primer3-2.4.0/src/thal.h primer3-2.4.0/src/thal_main.c primer3-2.4.0/test/ primer3-2.4.0/test/Makefile primer3-2.4.0/test/cmd_test3_output primer3-2.4.0/test/cmd_test4_output primer3-2.4.0/test/cmd_test5_output primer3-2.4.0/test/cmdline_test.pl primer3-2.4.0/test/dpal_input primer3-2.4.0/test/dpal_long_input primer3-2.4.0/test/dpal_long_score_output primer3-2.4.0/test/dpal_output primer3-2.4.0/test/dpal_score_output primer3-2.4.0/test/dpal_test.pl primer3-2.4.0/test/dv_conc_vs_dntp_conc_input primer3-2.4.0/test/dv_conc_vs_dntp_conc_output primer3-2.4.0/test/long_seq_input primer3-2.4.0/test/long_seq_output primer3-2.4.0/test/long_seq_tm_test.pl primer3-2.4.0/test/masker.fna primer3-2.4.0/test/masker_input primer3-2.4.0/test/masker_output primer3-2.4.0/test/masker_test.pl primer3-2.4.0/test/not_for_production.lib primer3-2.4.0/test/not_for_production_Ns.lib primer3-2.4.0/test/not_for_production_Xs.lib primer3-2.4.0/test/oligotm.txt primer3-2.4.0/test/oligotm_test.pl primer3-2.4.0/test/p3-tmpl-mispriming_input primer3-2.4.0/test/p3-tmpl-mispriming_output primer3-2.4.0/test/p3_3_prime_0_input primer3-2.4.0/test/p3_3_prime_0_output primer3-2.4.0/test/p3_3_prime_n_input primer3-2.4.0/test/p3_3_prime_n_output primer3-2.4.0/test/p3test.pl primer3-2.4.0/test/primer1_input primer3-2.4.0/test/primer1_list_last/ primer3-2.4.0/test/primer1_list_last/AGAG.for primer3-2.4.0/test/primer1_list_last/AGAG.rev primer3-2.4.0/test/primer1_list_last/SP01-02.txt.for primer3-2.4.0/test/primer1_list_last/SP01-02.txt.rev primer3-2.4.0/test/primer1_list_last/SP01-03.txt.for primer3-2.4.0/test/primer1_list_last/SP01-03.txt.rev primer3-2.4.0/test/primer1_list_last/SP01-06.txt.for primer3-2.4.0/test/primer1_list_last/SP01-06.txt.rev primer3-2.4.0/test/primer1_list_last/SP01-19.txt.for primer3-2.4.0/test/primer1_list_last/SP01-19.txt.rev primer3-2.4.0/test/primer1_list_last/SP01-21.txt.for primer3-2.4.0/test/primer1_list_last/SP01-21.txt.rev primer3-2.4.0/test/primer1_list_last/SP04-07.txt.for primer3-2.4.0/test/primer1_list_last/SP04-07.txt.rev primer3-2.4.0/test/primer1_list_last/included_test.for primer3-2.4.0/test/primer1_list_last/included_test.rev primer3-2.4.0/test/primer1_list_last/included_test_w_middle.for primer3-2.4.0/test/primer1_list_last/included_test_w_middle.int primer3-2.4.0/test/primer1_list_last/included_test_w_middle.rev primer3-2.4.0/test/primer1_list_last/long_seq.for primer3-2.4.0/test/primer1_list_last/long_seq.rev primer3-2.4.0/test/primer1_list_last/targets_test.for primer3-2.4.0/test/primer1_list_last/targets_test.rev primer3-2.4.0/test/primer1_output primer3-2.4.0/test/primer1_th_input primer3-2.4.0/test/primer1_th_list_last/ primer3-2.4.0/test/primer1_th_list_last/AGAG.for primer3-2.4.0/test/primer1_th_list_last/AGAG.rev primer3-2.4.0/test/primer1_th_list_last/SP01-02.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-02.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-03.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-03.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-06.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-06.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-15.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-15.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-19.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-19.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-20.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-20.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP01-21.txt.for primer3-2.4.0/test/primer1_th_list_last/SP01-21.txt.rev primer3-2.4.0/test/primer1_th_list_last/SP04-07.txt.for primer3-2.4.0/test/primer1_th_list_last/SP04-07.txt.rev primer3-2.4.0/test/primer1_th_list_last/included_test.for primer3-2.4.0/test/primer1_th_list_last/included_test.rev primer3-2.4.0/test/primer1_th_list_last/included_test_w_middle.for primer3-2.4.0/test/primer1_th_list_last/included_test_w_middle.int primer3-2.4.0/test/primer1_th_list_last/included_test_w_middle.rev primer3-2.4.0/test/primer1_th_list_last/long_seq.for primer3-2.4.0/test/primer1_th_list_last/long_seq.rev primer3-2.4.0/test/primer1_th_list_last/targets_test.for primer3-2.4.0/test/primer1_th_list_last/targets_test.rev primer3-2.4.0/test/primer1_th_output primer3-2.4.0/test/primer3_config/ primer3-2.4.0/test/primer3_config/dangle.dh primer3-2.4.0/test/primer3_config/dangle.ds primer3-2.4.0/test/primer3_config/interpretations/ primer3-2.4.0/test/primer3_config/interpretations/dangle_i.dh primer3-2.4.0/test/primer3_config/interpretations/dangle_i.ds primer3-2.4.0/test/primer3_config/interpretations/loops_i.dh primer3-2.4.0/test/primer3_config/interpretations/loops_i.ds primer3-2.4.0/test/primer3_config/interpretations/stack_i.dh primer3-2.4.0/test/primer3_config/interpretations/stack_i.ds primer3-2.4.0/test/primer3_config/interpretations/stackmm_i_mm.dh primer3-2.4.0/test/primer3_config/interpretations/stackmm_i_mm.ds primer3-2.4.0/test/primer3_config/interpretations/tetraloop_i.dh primer3-2.4.0/test/primer3_config/interpretations/tetraloop_i.ds primer3-2.4.0/test/primer3_config/interpretations/triloop_i.dh primer3-2.4.0/test/primer3_config/interpretations/triloop_i.ds primer3-2.4.0/test/primer3_config/interpretations/tstack2_i.dh primer3-2.4.0/test/primer3_config/interpretations/tstack2_i.ds primer3-2.4.0/test/primer3_config/interpretations/tstack_i.dh primer3-2.4.0/test/primer3_config/interpretations/tstack_i.ds primer3-2.4.0/test/primer3_config/interpretations/tstack_tm_inf_i.dh primer3-2.4.0/test/primer3_config/interpretations/tstack_tm_inf_i.ds primer3-2.4.0/test/primer3_config/loops.dh primer3-2.4.0/test/primer3_config/loops.ds primer3-2.4.0/test/primer3_config/stack.dh primer3-2.4.0/test/primer3_config/stack.ds primer3-2.4.0/test/primer3_config/stackmm.dh primer3-2.4.0/test/primer3_config/stackmm.ds primer3-2.4.0/test/primer3_config/tetraloop.dh primer3-2.4.0/test/primer3_config/tetraloop.ds primer3-2.4.0/test/primer3_config/triloop.dh primer3-2.4.0/test/primer3_config/triloop.ds primer3-2.4.0/test/primer3_config/tstack.dh primer3-2.4.0/test/primer3_config/tstack2.dh primer3-2.4.0/test/primer3_config/tstack2.ds primer3-2.4.0/test/primer3_config/tstack_tm_inf.ds primer3-2.4.0/test/primer3_io_translator.pl primer3-2.4.0/test/primer3_v1_1_4_default_settings_input primer3-2.4.0/test/primer3_v1_1_4_default_settings_output primer3-2.4.0/test/primer3web_v0_4_0_default_settings_input primer3-2.4.0/test/primer3web_v0_4_0_default_settings_output primer3-2.4.0/test/primer3web_v3_0_0_default_settings_input primer3-2.4.0/test/primer3web_v3_0_0_default_settings_output primer3-2.4.0/test/primer3web_v4_0_0_default_settings_input primer3-2.4.0/test/primer3web_v4_0_0_default_settings_output primer3-2.4.0/test/primer_all_settingsfiles_input primer3-2.4.0/test/primer_all_settingsfiles_output primer3-2.4.0/test/primer_boundary1_formatted_output primer3-2.4.0/test/primer_boundary1_input primer3-2.4.0/test/primer_boundary1_output primer3-2.4.0/test/primer_boundary_formatted_output primer3-2.4.0/test/primer_boundary_input primer3-2.4.0/test/primer_boundary_output primer3-2.4.0/test/primer_check_input primer3-2.4.0/test/primer_check_output primer3-2.4.0/test/primer_end_pathology_input primer3-2.4.0/test/primer_end_pathology_output primer3-2.4.0/test/primer_first_base_index_input primer3-2.4.0/test/primer_first_base_index_output primer3-2.4.0/test/primer_gc_end_input primer3-2.4.0/test/primer_gc_end_output primer3-2.4.0/test/primer_global_err/ primer3-2.4.0/test/primer_global_err/MAX_PRIMER_LENGTH.in primer3-2.4.0/test/primer_global_err/MAX_PRIMER_LENGTH.out primer3-2.4.0/test/primer_global_err/MAX_PRIMER_LENGTH.out2 primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_1.in primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_1.out primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_1.out2 primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_2.in primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_2.out primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_2.out2 primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_3.in primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_3.out primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_3.out2 primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_4.in primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_4.out primer3-2.4.0/test/primer_global_err/bad_divalent_dntp_conc_4.out2 primer3-2.4.0/test/primer_global_err/bad_dna_conc.in primer3-2.4.0/test/primer_global_err/bad_dna_conc.out primer3-2.4.0/test/primer_global_err/bad_dna_conc.out2 primer3-2.4.0/test/primer_global_err/bad_first_base_index.in primer3-2.4.0/test/primer_global_err/bad_first_base_index.out primer3-2.4.0/test/primer_global_err/bad_first_base_index.out2 primer3-2.4.0/test/primer_global_err/bad_float_1.in primer3-2.4.0/test/primer_global_err/bad_float_1.out primer3-2.4.0/test/primer_global_err/bad_float_1.out2 primer3-2.4.0/test/primer_global_err/bad_float_2.in primer3-2.4.0/test/primer_global_err/bad_float_2.out primer3-2.4.0/test/primer_global_err/bad_float_2.out2 primer3-2.4.0/test/primer_global_err/bad_float_3.in primer3-2.4.0/test/primer_global_err/bad_float_3.out primer3-2.4.0/test/primer_global_err/bad_float_3.out2 primer3-2.4.0/test/primer_global_err/bad_float_4.in primer3-2.4.0/test/primer_global_err/bad_float_4.out primer3-2.4.0/test/primer_global_err/bad_float_4.out2 primer3-2.4.0/test/primer_global_err/bad_gc_1.in primer3-2.4.0/test/primer_global_err/bad_gc_1.out primer3-2.4.0/test/primer_global_err/bad_gc_1.out2 primer3-2.4.0/test/primer_global_err/bad_gc_2.in primer3-2.4.0/test/primer_global_err/bad_gc_2.out primer3-2.4.0/test/primer_global_err/bad_gc_2.out2 primer3-2.4.0/test/primer_global_err/bad_gc_3.in primer3-2.4.0/test/primer_global_err/bad_gc_3.out primer3-2.4.0/test/primer_global_err/bad_gc_3.out2 primer3-2.4.0/test/primer_global_err/bad_gc_int_1.in primer3-2.4.0/test/primer_global_err/bad_gc_int_1.out primer3-2.4.0/test/primer_global_err/bad_gc_int_1.out2 primer3-2.4.0/test/primer_global_err/bad_gc_int_2.in primer3-2.4.0/test/primer_global_err/bad_gc_int_2.out primer3-2.4.0/test/primer_global_err/bad_gc_int_2.out2 primer3-2.4.0/test/primer_global_err/bad_gc_int_3.in primer3-2.4.0/test/primer_global_err/bad_gc_int_3.out primer3-2.4.0/test/primer_global_err/bad_gc_int_3.out2 primer3-2.4.0/test/primer_global_err/bad_min_three_prime_distance.in primer3-2.4.0/test/primer_global_err/bad_min_three_prime_distance.out primer3-2.4.0/test/primer_global_err/bad_min_three_prime_distance.out2 primer3-2.4.0/test/primer_global_err/bad_num_ns.in primer3-2.4.0/test/primer_global_err/bad_num_ns.out primer3-2.4.0/test/primer_global_err/bad_num_ns.out2 primer3-2.4.0/test/primer_global_err/bad_num_ns_int.in primer3-2.4.0/test/primer_global_err/bad_num_ns_int.out primer3-2.4.0/test/primer_global_err/bad_num_ns_int.out2 primer3-2.4.0/test/primer_global_err/bad_product_sizes_1.in primer3-2.4.0/test/primer_global_err/bad_product_sizes_1.out primer3-2.4.0/test/primer_global_err/bad_product_sizes_1.out2 primer3-2.4.0/test/primer_global_err/bad_product_sizes_2.in primer3-2.4.0/test/primer_global_err/bad_product_sizes_2.out primer3-2.4.0/test/primer_global_err/bad_product_sizes_2.out2 primer3-2.4.0/test/primer_global_err/bad_product_sizes_3.in primer3-2.4.0/test/primer_global_err/bad_product_sizes_3.out primer3-2.4.0/test/primer_global_err/bad_product_sizes_3.out2 primer3-2.4.0/test/primer_global_err/bad_product_sizes_4.in primer3-2.4.0/test/primer_global_err/bad_product_sizes_4.out primer3-2.4.0/test/primer_global_err/bad_product_sizes_4.out2 primer3-2.4.0/test/primer_global_err/bad_salt_conc.in primer3-2.4.0/test/primer_global_err/bad_salt_conc.out primer3-2.4.0/test/primer_global_err/bad_salt_conc.out2 primer3-2.4.0/test/primer_global_err/bad_self_any.in primer3-2.4.0/test/primer_global_err/bad_self_any.out primer3-2.4.0/test/primer_global_err/bad_self_any.out2 primer3-2.4.0/test/primer_global_err/bad_self_any_int.in primer3-2.4.0/test/primer_global_err/bad_self_any_int.out primer3-2.4.0/test/primer_global_err/bad_self_any_int.out2 primer3-2.4.0/test/primer_global_err/bad_self_end.in primer3-2.4.0/test/primer_global_err/bad_self_end.out primer3-2.4.0/test/primer_global_err/bad_self_end.out2 primer3-2.4.0/test/primer_global_err/bad_self_end_int.in primer3-2.4.0/test/primer_global_err/bad_self_end_int.out primer3-2.4.0/test/primer_global_err/bad_self_end_int.out2 primer3-2.4.0/test/primer_global_err/bad_settings0.in primer3-2.4.0/test/primer_global_err/bad_settings0.out primer3-2.4.0/test/primer_global_err/bad_settings0.out2 primer3-2.4.0/test/primer_global_err/bad_settings1.in primer3-2.4.0/test/primer_global_err/bad_settings1.out primer3-2.4.0/test/primer_global_err/bad_settings1.out2 primer3-2.4.0/test/primer_global_err/bad_settings2.in primer3-2.4.0/test/primer_global_err/bad_settings2.out primer3-2.4.0/test/primer_global_err/bad_settings2.out2 primer3-2.4.0/test/primer_global_err/bad_settings3.in primer3-2.4.0/test/primer_global_err/bad_settings3.out primer3-2.4.0/test/primer_global_err/bad_settings3.out2 primer3-2.4.0/test/primer_global_err/bad_settings4.in primer3-2.4.0/test/primer_global_err/bad_settings4.out primer3-2.4.0/test/primer_global_err/bad_settings4.out2 primer3-2.4.0/test/primer_global_err/bad_settings5.in primer3-2.4.0/test/primer_global_err/bad_settings5.out primer3-2.4.0/test/primer_global_err/bad_settings5.out2 primer3-2.4.0/test/primer_global_err/bad_settings6.in primer3-2.4.0/test/primer_global_err/bad_settings6.out primer3-2.4.0/test/primer_global_err/bad_settings6.out2 primer3-2.4.0/test/primer_global_err/empty_1.in primer3-2.4.0/test/primer_global_err/empty_1.out primer3-2.4.0/test/primer_global_err/empty_1.out2 primer3-2.4.0/test/primer_global_err/empty_product_size.in primer3-2.4.0/test/primer_global_err/empty_product_size.out primer3-2.4.0/test/primer_global_err/empty_product_size.out2 primer3-2.4.0/test/primer_global_err/gc_clamp_min_size.in primer3-2.4.0/test/primer_global_err/gc_clamp_min_size.out primer3-2.4.0/test/primer_global_err/gc_clamp_min_size.out2 primer3-2.4.0/test/primer_global_err/incorrect_task.in primer3-2.4.0/test/primer_global_err/incorrect_task.out primer3-2.4.0/test/primer_global_err/incorrect_task.out2 primer3-2.4.0/test/primer_global_err/input_for_settings_tests.txt primer3-2.4.0/test/primer_global_err/io_gc_content_obj_fn.in primer3-2.4.0/test/primer_global_err/io_gc_content_obj_fn.out primer3-2.4.0/test/primer_global_err/io_gc_content_obj_fn.out2 primer3-2.4.0/test/primer_global_err/io_obj_fn.in primer3-2.4.0/test/primer_global_err/io_obj_fn.out primer3-2.4.0/test/primer_global_err/io_obj_fn.out2 primer3-2.4.0/test/primer_global_err/junction_overlap_max_size.in primer3-2.4.0/test/primer_global_err/junction_overlap_max_size.out primer3-2.4.0/test/primer_global_err/junction_overlap_max_size.out2 primer3-2.4.0/test/primer_global_err/junction_overlap_min_size.in primer3-2.4.0/test/primer_global_err/junction_overlap_min_size.out primer3-2.4.0/test/primer_global_err/junction_overlap_min_size.out2 primer3-2.4.0/test/primer_global_err/max_min_tm.in primer3-2.4.0/test/primer_global_err/max_min_tm.out primer3-2.4.0/test/primer_global_err/max_min_tm.out2 primer3-2.4.0/test/primer_global_err/max_min_tm_int.in primer3-2.4.0/test/primer_global_err/max_min_tm_int.out primer3-2.4.0/test/primer_global_err/max_min_tm_int.out2 primer3-2.4.0/test/primer_global_err/max_opt_tm.in primer3-2.4.0/test/primer_global_err/max_opt_tm.out primer3-2.4.0/test/primer_global_err/max_opt_tm.out2 primer3-2.4.0/test/primer_global_err/max_opt_tm_int.in primer3-2.4.0/test/primer_global_err/max_opt_tm_int.out primer3-2.4.0/test/primer_global_err/max_opt_tm_int.out2 primer3-2.4.0/test/primer_global_err/max_size_limit_int.in primer3-2.4.0/test/primer_global_err/max_size_limit_int.out primer3-2.4.0/test/primer_global_err/max_size_limit_int.out2 primer3-2.4.0/test/primer_global_err/max_size_min_product.in primer3-2.4.0/test/primer_global_err/max_size_min_product.out primer3-2.4.0/test/primer_global_err/max_size_min_product.out2 primer3-2.4.0/test/primer_global_err/max_size_min_product_int.in primer3-2.4.0/test/primer_global_err/max_size_min_product_int.out primer3-2.4.0/test/primer_global_err/max_size_min_product_int.out2 primer3-2.4.0/test/primer_global_err/min_opt_tm.in primer3-2.4.0/test/primer_global_err/min_opt_tm.out primer3-2.4.0/test/primer_global_err/min_opt_tm.out2 primer3-2.4.0/test/primer_global_err/min_opt_tm_int.in primer3-2.4.0/test/primer_global_err/min_opt_tm_int.out primer3-2.4.0/test/primer_global_err/min_opt_tm_int.out2 primer3-2.4.0/test/primer_global_err/mishyb_obj_fn.in primer3-2.4.0/test/primer_global_err/mishyb_obj_fn.out primer3-2.4.0/test/primer_global_err/mishyb_obj_fn.out2 primer3-2.4.0/test/primer_global_err/mispr_obj_fn.in primer3-2.4.0/test/primer_global_err/mispr_obj_fn.out primer3-2.4.0/test/primer_global_err/mispr_obj_fn.out2 primer3-2.4.0/test/primer_global_err/must_match_length_0.in primer3-2.4.0/test/primer_global_err/must_match_length_0.out primer3-2.4.0/test/primer_global_err/must_match_length_0.out2 primer3-2.4.0/test/primer_global_err/must_match_length_1.in primer3-2.4.0/test/primer_global_err/must_match_length_1.out primer3-2.4.0/test/primer_global_err/must_match_length_1.out2 primer3-2.4.0/test/primer_global_err/must_match_length_10.in primer3-2.4.0/test/primer_global_err/must_match_length_10.out primer3-2.4.0/test/primer_global_err/must_match_length_10.out2 primer3-2.4.0/test/primer_global_err/must_match_length_2.in primer3-2.4.0/test/primer_global_err/must_match_length_2.out primer3-2.4.0/test/primer_global_err/must_match_length_2.out2 primer3-2.4.0/test/primer_global_err/must_match_length_3.in primer3-2.4.0/test/primer_global_err/must_match_length_3.out primer3-2.4.0/test/primer_global_err/must_match_length_3.out2 primer3-2.4.0/test/primer_global_err/must_match_length_4.in primer3-2.4.0/test/primer_global_err/must_match_length_4.out primer3-2.4.0/test/primer_global_err/must_match_length_4.out2 primer3-2.4.0/test/primer_global_err/must_match_length_5.in primer3-2.4.0/test/primer_global_err/must_match_length_5.out primer3-2.4.0/test/primer_global_err/must_match_length_5.out2 primer3-2.4.0/test/primer_global_err/must_match_length_6.in primer3-2.4.0/test/primer_global_err/must_match_length_6.out primer3-2.4.0/test/primer_global_err/must_match_length_6.out2 primer3-2.4.0/test/primer_global_err/must_match_length_7.in primer3-2.4.0/test/primer_global_err/must_match_length_7.out primer3-2.4.0/test/primer_global_err/must_match_length_7.out2 primer3-2.4.0/test/primer_global_err/must_match_length_8.in primer3-2.4.0/test/primer_global_err/must_match_length_8.out primer3-2.4.0/test/primer_global_err/must_match_length_8.out2 primer3-2.4.0/test/primer_global_err/must_match_length_9.in primer3-2.4.0/test/primer_global_err/must_match_length_9.out primer3-2.4.0/test/primer_global_err/must_match_length_9.out2 primer3-2.4.0/test/primer_global_err/no_equal.in primer3-2.4.0/test/primer_global_err/no_equal.out primer3-2.4.0/test/primer_global_err/no_equal.out2 primer3-2.4.0/test/primer_global_err/no_terminal_equal.in primer3-2.4.0/test/primer_global_err/no_terminal_equal.out primer3-2.4.0/test/primer_global_err/no_terminal_equal.out2 primer3-2.4.0/test/primer_global_err/opt_max_size.in primer3-2.4.0/test/primer_global_err/opt_max_size.out primer3-2.4.0/test/primer_global_err/opt_max_size.out2 primer3-2.4.0/test/primer_global_err/opt_max_size_int.in primer3-2.4.0/test/primer_global_err/opt_max_size_int.out primer3-2.4.0/test/primer_global_err/opt_max_size_int.out2 primer3-2.4.0/test/primer_global_err/opt_min_size.in primer3-2.4.0/test/primer_global_err/opt_min_size.out primer3-2.4.0/test/primer_global_err/opt_min_size.out2 primer3-2.4.0/test/primer_global_err/opt_min_size_int.in primer3-2.4.0/test/primer_global_err/opt_min_size_int.out primer3-2.4.0/test/primer_global_err/opt_min_size_int.out2 primer3-2.4.0/test/primer_global_err/pair_mispr.in primer3-2.4.0/test/primer_global_err/pair_mispr.out primer3-2.4.0/test/primer_global_err/pair_mispr.out2 primer3-2.4.0/test/primer_global_err/pr_gc_content_obj_fn.in primer3-2.4.0/test/primer_global_err/pr_gc_content_obj_fn.out primer3-2.4.0/test/primer_global_err/pr_gc_content_obj_fn.out2 primer3-2.4.0/test/primer_global_err/product_size_obj_fn.in primer3-2.4.0/test/primer_global_err/product_size_obj_fn.out primer3-2.4.0/test/primer_global_err/product_size_obj_fn.out2 primer3-2.4.0/test/primer_global_err/product_tm_obj_fn.in primer3-2.4.0/test/primer_global_err/product_tm_obj_fn.out primer3-2.4.0/test/primer_global_err/product_tm_obj_fn.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err.in primer3-2.4.0/test/primer_global_err/repeat_lib_err.out primer3-2.4.0/test/primer_global_err/repeat_lib_err.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err1.in primer3-2.4.0/test/primer_global_err/repeat_lib_err1.out primer3-2.4.0/test/primer_global_err/repeat_lib_err1.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err2.in primer3-2.4.0/test/primer_global_err/repeat_lib_err2.out primer3-2.4.0/test/primer_global_err/repeat_lib_err2.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err3.in primer3-2.4.0/test/primer_global_err/repeat_lib_err3.out primer3-2.4.0/test/primer_global_err/repeat_lib_err3.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err4.in primer3-2.4.0/test/primer_global_err/repeat_lib_err4.out primer3-2.4.0/test/primer_global_err/repeat_lib_err4.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err5.in primer3-2.4.0/test/primer_global_err/repeat_lib_err5.out primer3-2.4.0/test/primer_global_err/repeat_lib_err5.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_err6.in primer3-2.4.0/test/primer_global_err/repeat_lib_err6.out primer3-2.4.0/test/primer_global_err/repeat_lib_err6.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err1.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err1.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err1.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err2.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err2.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err2.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err3.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err3.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err3.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err4.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err4.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err4.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err5.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err5.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err5.out2 primer3-2.4.0/test/primer_global_err/repeat_lib_int_err6.in primer3-2.4.0/test/primer_global_err/repeat_lib_int_err6.out primer3-2.4.0/test/primer_global_err/repeat_lib_int_err6.out2 primer3-2.4.0/test/primer_global_err/seq_quality1.in primer3-2.4.0/test/primer_global_err/seq_quality1.out primer3-2.4.0/test/primer_global_err/seq_quality1.out2 primer3-2.4.0/test/primer_global_err/seq_quality2.in primer3-2.4.0/test/primer_global_err/seq_quality2.out primer3-2.4.0/test/primer_global_err/seq_quality2.out2 primer3-2.4.0/test/primer_global_err/seq_quality3.in primer3-2.4.0/test/primer_global_err/seq_quality3.out primer3-2.4.0/test/primer_global_err/seq_quality3.out2 primer3-2.4.0/test/primer_global_err/seq_quality4.in primer3-2.4.0/test/primer_global_err/seq_quality4.out primer3-2.4.0/test/primer_global_err/seq_quality4.out2 primer3-2.4.0/test/primer_global_err/too_many_product_sizes.in primer3-2.4.0/test/primer_global_err/too_many_product_sizes.out primer3-2.4.0/test/primer_global_err/too_many_product_sizes.out2 primer3-2.4.0/test/primer_global_err/zero_min_size.in primer3-2.4.0/test/primer_global_err/zero_min_size.out primer3-2.4.0/test/primer_global_err/zero_min_size.out2 primer3-2.4.0/test/primer_global_err/zero_num_return.in primer3-2.4.0/test/primer_global_err/zero_num_return.out primer3-2.4.0/test/primer_global_err/zero_num_return.out2 primer3-2.4.0/test/primer_high_gc_load_set.set primer3-2.4.0/test/primer_high_gc_load_set_input primer3-2.4.0/test/primer_high_gc_load_set_output primer3-2.4.0/test/primer_high_tm_load_set.set primer3-2.4.0/test/primer_high_tm_load_set_input primer3-2.4.0/test/primer_high_tm_load_set_output primer3-2.4.0/test/primer_human_input primer3-2.4.0/test/primer_human_output primer3-2.4.0/test/primer_input primer3-2.4.0/test/primer_internal1_formatted_output primer3-2.4.0/test/primer_internal1_input primer3-2.4.0/test/primer_internal1_output primer3-2.4.0/test/primer_internal_formatted_output primer3-2.4.0/test/primer_internal_input primer3-2.4.0/test/primer_internal_output primer3-2.4.0/test/primer_lib_amb_codes_input primer3-2.4.0/test/primer_lib_amb_codes_output primer3-2.4.0/test/primer_list_last/ primer3-2.4.0/test/primer_list_last/AGAG.for primer3-2.4.0/test/primer_list_last/AGAG.rev primer3-2.4.0/test/primer_list_last/SP01-02.txt.for primer3-2.4.0/test/primer_list_last/SP01-02.txt.rev primer3-2.4.0/test/primer_list_last/SP01-03.txt.for primer3-2.4.0/test/primer_list_last/SP01-03.txt.rev primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat1.for primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat1.int primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat1.rev primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat2.for primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat2.int primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat2.rev primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat3.for primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat3.int primer3-2.4.0/test/primer_list_last/SP01-06-with-repeat3.rev primer3-2.4.0/test/primer_list_last/SP01-06.txt.for primer3-2.4.0/test/primer_list_last/SP01-06.txt.rev primer3-2.4.0/test/primer_list_last/SP01-19.txt.for primer3-2.4.0/test/primer_list_last/SP01-19.txt.rev primer3-2.4.0/test/primer_list_last/SP01-21.txt.for primer3-2.4.0/test/primer_list_last/SP01-21.txt.rev primer3-2.4.0/test/primer_list_last/SP04-07.txt.for primer3-2.4.0/test/primer_list_last/SP04-07.txt.rev primer3-2.4.0/test/primer_list_last/case_problem_test.for primer3-2.4.0/test/primer_list_last/case_problem_test.rev primer3-2.4.0/test/primer_list_last/included_test.for primer3-2.4.0/test/primer_list_last/included_test.rev primer3-2.4.0/test/primer_list_last/included_test_w_middle.for primer3-2.4.0/test/primer_list_last/included_test_w_middle.int primer3-2.4.0/test/primer_list_last/included_test_w_middle.rev primer3-2.4.0/test/primer_list_last/long_seq.for primer3-2.4.0/test/primer_list_last/long_seq.rev primer3-2.4.0/test/primer_list_last/targets_test.for primer3-2.4.0/test/primer_list_last/targets_test.rev primer3-2.4.0/test/primer_masker_formatted_output primer3-2.4.0/test/primer_masker_input primer3-2.4.0/test/primer_masker_output primer3-2.4.0/test/primer_mispriming_boundary1_formatted_output primer3-2.4.0/test/primer_mispriming_boundary1_input primer3-2.4.0/test/primer_mispriming_boundary1_output primer3-2.4.0/test/primer_mispriming_boundary2_formatted_output primer3-2.4.0/test/primer_mispriming_boundary2_input primer3-2.4.0/test/primer_mispriming_boundary2_output primer3-2.4.0/test/primer_mispriming_formatted_output primer3-2.4.0/test/primer_mispriming_input primer3-2.4.0/test/primer_mispriming_long_lib_input primer3-2.4.0/test/primer_mispriming_long_lib_output primer3-2.4.0/test/primer_mispriming_output primer3-2.4.0/test/primer_mispriming_th_input primer3-2.4.0/test/primer_mispriming_th_output primer3-2.4.0/test/primer_must_match_input primer3-2.4.0/test/primer_must_match_output primer3-2.4.0/test/primer_must_overlap_point_input primer3-2.4.0/test/primer_must_overlap_point_output primer3-2.4.0/test/primer_must_use_formatted_output primer3-2.4.0/test/primer_must_use_input primer3-2.4.0/test/primer_must_use_op_input primer3-2.4.0/test/primer_must_use_output primer3-2.4.0/test/primer_must_use_th_input primer3-2.4.0/test/primer_must_use_th_output primer3-2.4.0/test/primer_new_tasks_formatted_output primer3-2.4.0/test/primer_new_tasks_input primer3-2.4.0/test/primer_new_tasks_output primer3-2.4.0/test/primer_new_tasks_th_input primer3-2.4.0/test/primer_new_tasks_th_output primer3-2.4.0/test/primer_num_best_input primer3-2.4.0/test/primer_num_best_output primer3-2.4.0/test/primer_obj_fn_input primer3-2.4.0/test/primer_obj_fn_output primer3-2.4.0/test/primer_ok_regions2_input primer3-2.4.0/test/primer_ok_regions2_output primer3-2.4.0/test/primer_ok_regions_formatted_output primer3-2.4.0/test/primer_ok_regions_input primer3-2.4.0/test/primer_ok_regions_output primer3-2.4.0/test/primer_output primer3-2.4.0/test/primer_overlap_junction_input primer3-2.4.0/test/primer_overlap_junction_output primer3-2.4.0/test/primer_position_penalty_formatted_output primer3-2.4.0/test/primer_position_penalty_input primer3-2.4.0/test/primer_position_penalty_output primer3-2.4.0/test/primer_quality_boundary_input primer3-2.4.0/test/primer_quality_boundary_output primer3-2.4.0/test/primer_rat_input primer3-2.4.0/test/primer_rat_output primer3-2.4.0/test/primer_renewed_tasks_input primer3-2.4.0/test/primer_renewed_tasks_output primer3-2.4.0/test/primer_repeat_boundary1_lib primer3-2.4.0/test/primer_repeat_boundary2_lib primer3-2.4.0/test/primer_repeat_long_lib primer3-2.4.0/test/primer_start_codon_input primer3-2.4.0/test/primer_start_codon_output primer3-2.4.0/test/primer_syntax_input primer3-2.4.0/test/primer_syntax_output primer3-2.4.0/test/primer_task_formatted_output primer3-2.4.0/test/primer_task_input primer3-2.4.0/test/primer_task_output primer3-2.4.0/test/primer_task_th_input primer3-2.4.0/test/primer_task_th_output primer3-2.4.0/test/primer_thal_args_input primer3-2.4.0/test/primer_thal_args_output primer3-2.4.0/test/primer_thal_max_seq_error_input primer3-2.4.0/test/primer_thal_max_seq_error_output primer3-2.4.0/test/primer_thermod_align_formatted_output primer3-2.4.0/test/primer_thermod_align_input primer3-2.4.0/test/primer_thermod_align_output primer3-2.4.0/test/primer_three_prime_distance_input primer3-2.4.0/test/primer_three_prime_distance_output primer3-2.4.0/test/primer_tm_lc_masking_formatted_output primer3-2.4.0/test/primer_tm_lc_masking_input primer3-2.4.0/test/primer_tm_lc_masking_output primer3-2.4.0/test/repeat_lib1 primer3-2.4.0/test/repeat_lib2 primer3-2.4.0/test/repeat_lib3 primer3-2.4.0/test/repeat_lib4 primer3-2.4.0/test/repeat_lib5 primer3-2.4.0/test/repeat_lib6 primer3-2.4.0/test/test_compl_error_input primer3-2.4.0/test/test_compl_error_output primer3-2.4.0/test/test_left_to_right_of_right_input primer3-2.4.0/test/test_left_to_right_of_right_output primer3-2.4.0/test/th-w-other-tasks-settings.txt primer3-2.4.0/test/th-w-other-tasks_input primer3-2.4.0/test/th-w-other-tasks_list_last/ primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_1.for primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_1.int primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_1.rev primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_2.for primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_2.int primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_2.rev primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_3.for primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_3.int primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_3.rev primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_4.for primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_4.int primer3-2.4.0/test/th-w-other-tasks_list_last/pick_primer_list_and_file_flag_th_4.rev primer3-2.4.0/test/th-w-other-tasks_output primer3-2.4.0/test/thal_input primer3-2.4.0/test/thal_long_input primer3-2.4.0/test/thal_long_temp_output primer3-2.4.0/test/thal_output primer3-2.4.0/test/thal_temp_output primer3-2.4.0/test/thal_test.pl primer3-2.4.0/test/vgrep.pl patching file src/thal.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 primer3_boulder_main.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o format_output.o format_output.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o read_boulder.o read_boulder.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o print_boulder.o print_boulder.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 masker.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -Wno-deprecated -o libprimer3.o libprimer3.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o p3_seq_lib.o p3_seq_lib.c ar rv libprimer3.a libprimer3.o p3_seq_lib.o ar: creating libprimer3.a a - libprimer3.o a - p3_seq_lib.o ranlib libprimer3.a g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o dpal_primer.o dpal.c dpal.c: In function ‘void _dpal_generic(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:368:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^~ dpal.c:368:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:369:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~ dpal.c:369:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~ dpal.c:369:50: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~~~~ dpal.c: In function ‘void _dpal_long_nopath_generic(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:594:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^~ dpal.c:594:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^~~ dpal.c:594:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:595:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~ dpal.c:595:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~ dpal.c:595:50: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~~~~ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_local(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:760:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 760 | register int i, j; | ^ dpal.c:760:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 760 | register int i, j; | ^ dpal.c:761:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 761 | register int gap = in->gap; | ^~~ dpal.c:762:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 762 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:763:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 763 | register int score; /* Current score. */ | ^~~~~ dpal.c:764:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 764 | register int a; | ^ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_global_end(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:852:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:852:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:852:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:853:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 853 | register int gap = in->gap; | ^~~ dpal.c:854:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 854 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:855:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 855 | register int score; /* Current score. */ | ^~~~~ dpal.c:856:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 856 | register int a, t; | ^ dpal.c:856:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 856 | register int a, t; | ^ dpal.c: In function ‘int illegal_char(const unsigned char*, const int (*)[256], char*)’: dpal.c:1049:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1049 | register const unsigned char *p; | ^ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_local_end(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:1072:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1072 | register int i, j; | ^ dpal.c:1072:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1072 | register int i, j; | ^ dpal.c:1073:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1073 | register int gap = in->gap; | ^~~ dpal.c:1074:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1074 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:1075:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1075 | register int score; /* Current score. */ | ^~~~~ dpal.c:1076:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1076 | register int a; | ^ ar rv libdpal.a dpal_primer.o ar: creating libdpal.a a - dpal_primer.o ranlib libdpal.a g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -ffloat-store -o thal_primer.o thal.c thal.c: In function ‘int symmetry_thermo(const unsigned char*)’: thal.c:2438:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2438 | register char s; | ^ thal.c:2439:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2439 | register char e; | ^ ar rv libthal.a thal_primer.o ar: creating libthal.a a - thal_primer.o ranlib libthal.a gcc -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -c -o oligotm.o oligotm.c cc1: warning: command-line option ‘-fpermissive’ is valid for C++/ObjC++ but not for C oligotm.c: In function ‘oligotm’: oligotm.c:424:44: warning: comparison between pointer and zero character constant [-Wpointer-compare] 424 | for(i = 0; i <= len && d != NULL && d != '\0';) { | ^~ oligotm.c:424:42: note: did you mean to dereference the pointer? 424 | for(i = 0; i <= len && d != NULL && d != '\0';) { | ^ ar rv liboligotm.a oligotm.o ar: creating liboligotm.a a - oligotm.o ranlib liboligotm.a ar rv libmasker.a masker.o ar: creating libmasker.a a - masker.o ranlib libmasker.a g++ -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o masker.o libprimer3.a libdpal.a libthal.a liboligotm.a libmasker.a -lm g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o dpal.o dpal.c dpal.c: In function ‘void _dpal_generic(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:368:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:368:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^~ dpal.c:368:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 368 | register int i, j, k, mg, c; | ^ dpal.c:369:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~ dpal.c:369:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~ dpal.c:369:50: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 369 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~~~~ dpal.c: In function ‘void _dpal_long_nopath_generic(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:594:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:594:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^~ dpal.c:594:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^~~ dpal.c:594:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 594 | register int i, j, k, mg, mgy, c; | ^ dpal.c:595:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~ dpal.c:595:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~ dpal.c:595:50: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 595 | register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; | ^~~~~~~ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_local(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:760:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 760 | register int i, j; | ^ dpal.c:760:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 760 | register int i, j; | ^ dpal.c:761:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 761 | register int gap = in->gap; | ^~~ dpal.c:762:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 762 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:763:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 763 | register int score; /* Current score. */ | ^~~~~ dpal.c:764:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 764 | register int a; | ^ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_global_end(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:852:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:852:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:852:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 852 | register int i, j, k; | ^ dpal.c:853:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 853 | register int gap = in->gap; | ^~~ dpal.c:854:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 854 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:855:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 855 | register int score; /* Current score. */ | ^~~~~ dpal.c:856:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 856 | register int a, t; | ^ dpal.c:856:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 856 | register int a, t; | ^ dpal.c: In function ‘int illegal_char(const unsigned char*, const int (*)[256], char*)’: dpal.c:1049:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1049 | register const unsigned char *p; | ^ dpal.c: In function ‘void _dpal_long_nopath_maxgap1_local_end(const unsigned char*, const unsigned char*, int, int, const dpal_args*, dpal_results*)’: dpal.c:1072:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1072 | register int i, j; | ^ dpal.c:1072:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1072 | register int i, j; | ^ dpal.c:1073:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1073 | register int gap = in->gap; | ^~~ dpal.c:1074:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1074 | register int smax; /* The optimum score. */ | ^~~~ dpal.c:1075:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1075 | register int score; /* Current score. */ | ^~~~~ dpal.c:1076:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1076 | register int a; | ^ g++ -g -o ntdpal ntdpal_main.o dpal.o g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o thal_main.o thal_main.c g++ -c -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -ffloat-store -o thal.o thal.c thal.c: In function ‘int symmetry_thermo(const unsigned char*)’: thal.c:2438:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2438 | register char s; | ^ thal.c:2439:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2439 | register char e; | ^ g++ -g -o ntthal thal_main.o thal.o -lm g++ -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o oligotm oligotm_main.c liboligotm.a -lm g++ -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o -lm g++ -fpermissive -D__USE_FIXED_PROTOTYPES__ -O2 -march=i586 -mtune=i686 -o primer3_masker masker_main.c libprimer3.a libdpal.a libthal.a liboligotm.a libmasker.a -lm Slackware package maker, version 3.14159265. Searching for symbolic links: usr/bin/primer32_core primer3_core Making symbolic link creation script: ( cd usr/bin ; rm -rf primer32_core ) ( cd usr/bin ; ln -sf primer3_core primer32_core ) It is recommended that you make these lines your new installation script. Would you like to make this stuff the install script for this package and remove the symbolic links ([y]es, [n]o)? y Removing symbolic links: removed './usr/bin/primer32_core' Creating your new ./install/doinst.sh... This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/primer3/primer3-2.4.0-i586-1salix15.0.txz ./ install/ install/doinst.sh install/slack-desc usr/ usr/bin/ usr/bin/ntdpal usr/bin/ntthal usr/bin/oligotm usr/bin/primer3_core usr/doc/ usr/doc/primer3-2.4.0/ usr/doc/primer3-2.4.0/LICENSE usr/doc/primer3-2.4.0/README.md usr/doc/primer3-2.4.0/References usr/doc/primer3-2.4.0/example usr/doc/primer3-2.4.0/primer3.SlackBuild usr/doc/primer3-2.4.0/primer3_manual.htm usr/doc/primer3-2.4.0/release_notes.txt usr/man/ usr/man/man1/ usr/man/man1/ntdpal.1.gz usr/man/man1/ntthal.1.gz usr/man/man1/oligotm.1.gz usr/man/man1/primer3_core.1.gz usr/share/ usr/share/primer3/ usr/share/primer3/primer3_config/ usr/share/primer3/primer3_config/dangle.dh usr/share/primer3/primer3_config/dangle.ds usr/share/primer3/primer3_config/interpretations/ usr/share/primer3/primer3_config/interpretations/dangle_i.dh usr/share/primer3/primer3_config/interpretations/dangle_i.ds usr/share/primer3/primer3_config/interpretations/loops_i.dh usr/share/primer3/primer3_config/interpretations/loops_i.ds usr/share/primer3/primer3_config/interpretations/stack_i.dh usr/share/primer3/primer3_config/interpretations/stack_i.ds usr/share/primer3/primer3_config/interpretations/stackmm_i_mm.dh usr/share/primer3/primer3_config/interpretations/stackmm_i_mm.ds usr/share/primer3/primer3_config/interpretations/tetraloop_i.dh usr/share/primer3/primer3_config/interpretations/tetraloop_i.ds usr/share/primer3/primer3_config/interpretations/triloop_i.dh usr/share/primer3/primer3_config/interpretations/triloop_i.ds usr/share/primer3/primer3_config/interpretations/tstack2_i.dh usr/share/primer3/primer3_config/interpretations/tstack2_i.ds usr/share/primer3/primer3_config/interpretations/tstack_i.dh usr/share/primer3/primer3_config/interpretations/tstack_i.ds usr/share/primer3/primer3_config/interpretations/tstack_tm_inf_i.dh usr/share/primer3/primer3_config/interpretations/tstack_tm_inf_i.ds usr/share/primer3/primer3_config/loops.dh usr/share/primer3/primer3_config/loops.ds usr/share/primer3/primer3_config/stack.dh usr/share/primer3/primer3_config/stack.ds usr/share/primer3/primer3_config/stackmm.dh usr/share/primer3/primer3_config/stackmm.ds usr/share/primer3/primer3_config/tetraloop.dh usr/share/primer3/primer3_config/tetraloop.ds usr/share/primer3/primer3_config/triloop.dh usr/share/primer3/primer3_config/triloop.ds usr/share/primer3/primer3_config/tstack.dh usr/share/primer3/primer3_config/tstack2.dh usr/share/primer3/primer3_config/tstack2.ds usr/share/primer3/primer3_config/tstack_tm_inf.ds usr/share/primer3/settings_files/ usr/share/primer3/settings_files/p3_th_settings.txt usr/share/primer3/settings_files/primer3_v1_1_4_default_settings.txt usr/share/primer3/settings_files/primer3web_v0_4_0_default_settings.txt usr/share/primer3/settings_files/primer3web_v3_0_0_default_settings.txt usr/share/primer3/settings_files/primer3web_v4_0_0_default_settings.txt Slackware package /usr/src/slapt-src/academic/primer3/primer3-2.4.0-i586-1salix15.0.txz created. Installing package primer3-2.4.0-i586-1salix15.0... | primer3 (Design PCR primers) | | Primer3 is a widely used program for designing PCR primers (PCR = | "Polymerase Chain Reaction"). PCR is an essential and | ubiquitous tool in genetics and molecular biology. Primer3 can also | design hybridization probes and sequencing primers. | | Home: http://primer3.sourceforge.net/ | References: /usr/doc/primer3-2.3.7/References | | | |