The following packages will be installed: tabix-legacy Fetching README... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done Fetching tabix-legacy.SlackBuild... 0%100%100%100%100%100%Done Fetching tabix-legacy.info... 0%100%100%100%100%100%Done tabix-0.2.6/ tabix-0.2.6/ChangeLog tabix-0.2.6/Makefile tabix-0.2.6/NEWS tabix-0.2.6/TabixReader.java tabix-0.2.6/bam_endian.h tabix-0.2.6/bedidx.c tabix-0.2.6/bgzf.c tabix-0.2.6/bgzf.h tabix-0.2.6/bgzip.c tabix-0.2.6/example.gtf.gz tabix-0.2.6/example.gtf.gz.tbi tabix-0.2.6/index.c tabix-0.2.6/khash.h tabix-0.2.6/knetfile.c tabix-0.2.6/knetfile.h tabix-0.2.6/kseq.h tabix-0.2.6/ksort.h tabix-0.2.6/kstring.c tabix-0.2.6/kstring.h tabix-0.2.6/main.c tabix-0.2.6/perl/ tabix-0.2.6/perl/MANIFEST tabix-0.2.6/perl/Makefile.PL tabix-0.2.6/perl/Tabix.pm tabix-0.2.6/perl/Tabix.xs tabix-0.2.6/perl/TabixIterator.pm tabix-0.2.6/perl/t/ tabix-0.2.6/perl/t/01local.t tabix-0.2.6/perl/t/02remote.t tabix-0.2.6/perl/typemap tabix-0.2.6/python/ tabix-0.2.6/python/setup.py tabix-0.2.6/python/tabixmodule.c tabix-0.2.6/python/test.py tabix-0.2.6/tabix.1 tabix-0.2.6/tabix.h tabix-0.2.6/tabix.py tabix-0.2.6/tabix.tex make[1]: Entering directory '/usr/src/slapt-src/academic/tabix-legacy/tabix-0.2.6' gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o bgzf.c: In function ‘bgzf_close’: bgzf.c:435:18: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 435 | int ret, count, block_length; | ^~~~~ gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o index.c: In function ‘ti_index_core’: index.c:305:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 305 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o main.c: In function ‘main’: main.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 161 | if ( conf_ptr ) | ^~ main.c:164:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 164 | if (skip >= 0) conf.line_skip = skip; | ^~ main.c:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 181 | if (reheader) | ^~ main.c:184:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 184 | struct stat stat_tbi,stat_vcf; | ^~~~~~ gcc -g -Wall -O2 -fPIC -o tabix main.o -L. -ltabix -lm -lz gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o gcc -g -Wall -O2 -fPIC -o bgzip bgzip.o bgzf.o knetfile.o -lz make[1]: Leaving directory '/usr/src/slapt-src/academic/tabix-legacy/tabix-0.2.6' Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/tabix-legacy/tabix-legacy-0.2.6-i586-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/bgzip-legacy usr/bin/tabix-legacy usr/doc/ usr/doc/tabix-legacy-0.2.6/ usr/doc/tabix-legacy-0.2.6/ChangeLog usr/doc/tabix-legacy-0.2.6/NEWS usr/doc/tabix-legacy-0.2.6/tabix-legacy.SlackBuild usr/man/ usr/man/man1/ usr/man/man1/tabix-legacy.1.gz usr/share/ usr/share/tabix-legacy/ usr/share/tabix-legacy/example.gtf.gz usr/share/tabix-legacy/example.gtf.gz.tbi WARNING: usr/share/tabix-legacy/example.gtf.gz is an empty gzipped file Slackware package /usr/src/slapt-src/academic/tabix-legacy/tabix-legacy-0.2.6-i586-1salix15.0.txz created. Installing package tabix-legacy-0.2.6-i586-1salix15.0... | tabix-legacy (Legacy version of Tabix) | | Tabix indexes a TAB-delimited genome position file in.tab.bgz | and creates an index file in.tab.bgz.tbi when region is absent | from the command-line. The input data file must be position | sorted and compressed by bgzip which has a gzip like interface. | Tabix is able to quickly retrieve data lines overlapping regions | specified in the format "chr:beginPos-endPos". | | Home: http://samtools.sourceforge.net/tabix.shtml | | |