configure.ac:16: installing './compile'
configure.ac:12: installing './install-sh'
configure.ac:12: installing './missing'
src/cpp/Makefile.am: installing './depcomp'
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vcftools-0.1.16/
vcftools-0.1.16/.gitignore
vcftools-0.1.16/.tarball-version
vcftools-0.1.16/LICENSE
vcftools-0.1.16/Makefile.am
vcftools-0.1.16/README.md
vcftools-0.1.16/autogen.sh
vcftools-0.1.16/build-aux/
vcftools-0.1.16/build-aux/git-version-gen
vcftools-0.1.16/configure.ac
vcftools-0.1.16/examples/
vcftools-0.1.16/examples/annotate-test.vcf
vcftools-0.1.16/examples/annotate.out
vcftools-0.1.16/examples/annotate.txt
vcftools-0.1.16/examples/annotate2.out
vcftools-0.1.16/examples/annotate3.out
vcftools-0.1.16/examples/cmp-test-a-3.3.vcf
vcftools-0.1.16/examples/cmp-test-a.vcf
vcftools-0.1.16/examples/cmp-test-b-3.3.vcf
vcftools-0.1.16/examples/cmp-test-b.vcf
vcftools-0.1.16/examples/cmp-test.out
vcftools-0.1.16/examples/concat-a.vcf
vcftools-0.1.16/examples/concat-b.vcf
vcftools-0.1.16/examples/concat-c.vcf
vcftools-0.1.16/examples/concat.out
vcftools-0.1.16/examples/consensus.fa
vcftools-0.1.16/examples/consensus.out
vcftools-0.1.16/examples/consensus.out2
vcftools-0.1.16/examples/consensus.vcf
vcftools-0.1.16/examples/contrast.out
vcftools-0.1.16/examples/contrast.vcf
vcftools-0.1.16/examples/fill-an-ac.out
vcftools-0.1.16/examples/filters.txt
vcftools-0.1.16/examples/fix-ploidy.out
vcftools-0.1.16/examples/fix-ploidy.samples
vcftools-0.1.16/examples/fix-ploidy.txt
vcftools-0.1.16/examples/fix-ploidy.vcf
vcftools-0.1.16/examples/floats.vcf
vcftools-0.1.16/examples/indel-stats.out
vcftools-0.1.16/examples/indel-stats.tab
vcftools-0.1.16/examples/indel-stats.vcf
vcftools-0.1.16/examples/invalid-4.0.vcf
vcftools-0.1.16/examples/isec-n2-test.vcf.out
vcftools-0.1.16/examples/merge-test-a.vcf
vcftools-0.1.16/examples/merge-test-b.vcf
vcftools-0.1.16/examples/merge-test-c.vcf
vcftools-0.1.16/examples/merge-test.vcf.out
vcftools-0.1.16/examples/parse-test.vcf
vcftools-0.1.16/examples/perl-api-1.pl
vcftools-0.1.16/examples/query-test.out
vcftools-0.1.16/examples/shuffle-test.vcf
vcftools-0.1.16/examples/subset.SNPs.out
vcftools-0.1.16/examples/subset.indels.out
vcftools-0.1.16/examples/subset.vcf
vcftools-0.1.16/examples/valid-3.3.vcf
vcftools-0.1.16/examples/valid-4.0.vcf
vcftools-0.1.16/examples/valid-4.0.vcf.stats
vcftools-0.1.16/examples/valid-4.1.vcf
vcftools-0.1.16/src/
vcftools-0.1.16/src/Makefile.am
vcftools-0.1.16/src/cpp/
vcftools-0.1.16/src/cpp/Makefile.am
vcftools-0.1.16/src/cpp/bcf_entry.cpp
vcftools-0.1.16/src/cpp/bcf_entry.h
vcftools-0.1.16/src/cpp/bcf_entry_setters.cpp
vcftools-0.1.16/src/cpp/bcf_file.cpp
vcftools-0.1.16/src/cpp/bcf_file.h
vcftools-0.1.16/src/cpp/bgzf.c
vcftools-0.1.16/src/cpp/bgzf.h
vcftools-0.1.16/src/cpp/dgeev.cpp
vcftools-0.1.16/src/cpp/dgeev.h
vcftools-0.1.16/src/cpp/entry.cpp
vcftools-0.1.16/src/cpp/entry.h
vcftools-0.1.16/src/cpp/entry_filters.cpp
vcftools-0.1.16/src/cpp/entry_getters.cpp
vcftools-0.1.16/src/cpp/entry_setters.cpp
vcftools-0.1.16/src/cpp/gamma.cpp
vcftools-0.1.16/src/cpp/gamma.h
vcftools-0.1.16/src/cpp/header.cpp
vcftools-0.1.16/src/cpp/header.h
vcftools-0.1.16/src/cpp/khash.h
vcftools-0.1.16/src/cpp/knetfile.c
vcftools-0.1.16/src/cpp/knetfile.h
vcftools-0.1.16/src/cpp/output_log.cpp
vcftools-0.1.16/src/cpp/output_log.h
vcftools-0.1.16/src/cpp/parameters.cpp
vcftools-0.1.16/src/cpp/parameters.h
vcftools-0.1.16/src/cpp/variant_file.cpp
vcftools-0.1.16/src/cpp/variant_file.h
vcftools-0.1.16/src/cpp/variant_file_diff.cpp
vcftools-0.1.16/src/cpp/variant_file_filters.cpp
vcftools-0.1.16/src/cpp/variant_file_format_convert.cpp
vcftools-0.1.16/src/cpp/variant_file_output.cpp
vcftools-0.1.16/src/cpp/vcf_entry.cpp
vcftools-0.1.16/src/cpp/vcf_entry.h
vcftools-0.1.16/src/cpp/vcf_entry_setters.cpp
vcftools-0.1.16/src/cpp/vcf_file.cpp
vcftools-0.1.16/src/cpp/vcf_file.h
vcftools-0.1.16/src/cpp/vcftools.1
vcftools-0.1.16/src/cpp/vcftools.cpp
vcftools-0.1.16/src/cpp/vcftools.h
vcftools-0.1.16/src/perl/
vcftools-0.1.16/src/perl/ChangeLog
vcftools-0.1.16/src/perl/FaSlice.pm
vcftools-0.1.16/src/perl/Makefile.am
vcftools-0.1.16/src/perl/Vcf.pm
vcftools-0.1.16/src/perl/VcfStats.pm
vcftools-0.1.16/src/perl/fill-aa
vcftools-0.1.16/src/perl/fill-an-ac
vcftools-0.1.16/src/perl/fill-fs
vcftools-0.1.16/src/perl/fill-ref-md5
vcftools-0.1.16/src/perl/tab-to-vcf
vcftools-0.1.16/src/perl/test.t
vcftools-0.1.16/src/perl/vcf-annotate
vcftools-0.1.16/src/perl/vcf-compare
vcftools-0.1.16/src/perl/vcf-concat
vcftools-0.1.16/src/perl/vcf-consensus
vcftools-0.1.16/src/perl/vcf-contrast
vcftools-0.1.16/src/perl/vcf-convert
vcftools-0.1.16/src/perl/vcf-fix-newlines
vcftools-0.1.16/src/perl/vcf-fix-ploidy
vcftools-0.1.16/src/perl/vcf-haplotypes
vcftools-0.1.16/src/perl/vcf-indel-stats
vcftools-0.1.16/src/perl/vcf-isec
vcftools-0.1.16/src/perl/vcf-merge
vcftools-0.1.16/src/perl/vcf-phased-join
vcftools-0.1.16/src/perl/vcf-query
vcftools-0.1.16/src/perl/vcf-shuffle-cols
vcftools-0.1.16/src/perl/vcf-sort
vcftools-0.1.16/src/perl/vcf-stats
vcftools-0.1.16/src/perl/vcf-subset
vcftools-0.1.16/src/perl/vcf-to-tab
vcftools-0.1.16/src/perl/vcf-tstv
vcftools-0.1.16/src/perl/vcf-validator
checking for a BSD-compatible install... /usr/bin/ginstall -c
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g++ -DHAVE_CONFIG_H -I. -I../..   -O2 -march=i586 -mtune=i686  -g -O2 -MT vcftools-vcf_entry.o -MD -MP -MF .deps/vcftools-vcf_entry.Tpo -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp
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g++ -DHAVE_CONFIG_H -I. -I../..   -O2 -march=i586 -mtune=i686  -g -O2 -MT vcftools-vcf_entry_setters.o -MD -MP -MF .deps/vcftools-vcf_entry_setters.Tpo -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp
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g++ -DHAVE_CONFIG_H -I. -I../..   -O2 -march=i586 -mtune=i686  -g -O2 -MT vcftools-vcf_file.o -MD -MP -MF .deps/vcftools-vcf_file.Tpo -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp
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g++ -DHAVE_CONFIG_H -I. -I../..   -O2 -march=i586 -mtune=i686  -g -O2 -MT vcftools-vcftools.o -MD -MP -MF .deps/vcftools-vcftools.Tpo -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp
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g++  -g -O2   -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz 
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 /usr/bin/mkdir -p '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/bin'
  /usr/bin/ginstall -c vcftools '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/bin'
 /usr/bin/mkdir -p '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/man/man1'
 /usr/bin/ginstall -c -m 644 vcftools.1 '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/man/man1'
make[3]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/cpp'
make[2]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/cpp'
Making install in perl
make[2]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/perl'
make[3]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/perl'
 /usr/bin/mkdir -p '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/bin'
 /usr/bin/ginstall -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/bin'
 /usr/bin/mkdir -p '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/share/perl5/vendor_perl'
 /usr/bin/ginstall -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/usr/src/slapt-src/academic/vcftools/package-vcftools/usr/share/perl5/vendor_perl'
make[3]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/perl'
make[2]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src/perl'
make[2]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src'
make[3]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src'
make[2]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src'
make[1]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16/src'
make[1]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16'
make[2]: Entering directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16'
make[1]: Leaving directory '/usr/src/slapt-src/academic/vcftools/vcftools-0.1.16'

Slackware package maker, version 3.14159265.

Searching for symbolic links:

No symbolic links were found, so we won't make an installation script.
You can make your own later in ./install/doinst.sh and rebuild the
package if you like.

This next step is optional - you can set the directories in your package
to some sane permissions. If any of the directories in your package have
special permissions, then DO NOT reset them here!

Would you like to reset all directory permissions to 755 (drwxr-xr-x) and
directory ownerships to root.root ([y]es, [n]o)? n

Creating Slackware package:  /usr/src/slapt-src/academic/vcftools/vcftools-0.1.16-i586-1salix15.0.txz

./
install/
install/slack-desc
usr/
usr/bin/
usr/bin/fill-aa
usr/bin/fill-an-ac
usr/bin/fill-fs
usr/bin/fill-ref-md5
usr/bin/vcf-annotate
usr/bin/vcf-compare
usr/bin/vcf-concat
usr/bin/vcf-consensus
usr/bin/vcf-contrast
usr/bin/vcf-convert
usr/bin/vcf-fix-newlines
usr/bin/vcf-fix-ploidy
usr/bin/vcf-indel-stats
usr/bin/vcf-isec
usr/bin/vcf-merge
usr/bin/vcf-phased-join
usr/bin/vcf-query
usr/bin/vcf-shuffle-cols
usr/bin/vcf-sort
usr/bin/vcf-stats
usr/bin/vcf-subset
usr/bin/vcf-to-tab
usr/bin/vcf-tstv
usr/bin/vcf-validator
usr/bin/vcftools
usr/doc/
usr/doc/vcftools-0.1.16/
usr/doc/vcftools-0.1.16/ChangeLog
usr/doc/vcftools-0.1.16/README.md
usr/doc/vcftools-0.1.16/References
usr/doc/vcftools-0.1.16/vcftools.SlackBuild
usr/man/
usr/man/man1/
usr/man/man1/vcftools.1.gz
usr/share/
usr/share/perl5/
usr/share/perl5/vendor_perl/
usr/share/perl5/vendor_perl/FaSlice.pm
usr/share/perl5/vendor_perl/Vcf.pm
usr/share/perl5/vendor_perl/VcfStats.pm
usr/share/vcftools/
usr/share/vcftools/examples/
usr/share/vcftools/examples/annotate-test.vcf
usr/share/vcftools/examples/annotate.out
usr/share/vcftools/examples/annotate.txt
usr/share/vcftools/examples/annotate2.out
usr/share/vcftools/examples/annotate3.out
usr/share/vcftools/examples/cmp-test-a-3.3.vcf
usr/share/vcftools/examples/cmp-test-a.vcf
usr/share/vcftools/examples/cmp-test-b-3.3.vcf
usr/share/vcftools/examples/cmp-test-b.vcf
usr/share/vcftools/examples/cmp-test.out
usr/share/vcftools/examples/concat-a.vcf
usr/share/vcftools/examples/concat-b.vcf
usr/share/vcftools/examples/concat-c.vcf
usr/share/vcftools/examples/concat.out
usr/share/vcftools/examples/consensus.fa
usr/share/vcftools/examples/consensus.out
usr/share/vcftools/examples/consensus.out2
usr/share/vcftools/examples/consensus.vcf
usr/share/vcftools/examples/contrast.out
usr/share/vcftools/examples/contrast.vcf
usr/share/vcftools/examples/fill-an-ac.out
usr/share/vcftools/examples/filters.txt
usr/share/vcftools/examples/fix-ploidy.out
usr/share/vcftools/examples/fix-ploidy.samples
usr/share/vcftools/examples/fix-ploidy.txt
usr/share/vcftools/examples/fix-ploidy.vcf
usr/share/vcftools/examples/floats.vcf
usr/share/vcftools/examples/indel-stats.out
usr/share/vcftools/examples/indel-stats.tab
usr/share/vcftools/examples/indel-stats.vcf
usr/share/vcftools/examples/invalid-4.0.vcf
usr/share/vcftools/examples/isec-n2-test.vcf.out
usr/share/vcftools/examples/merge-test-a.vcf
usr/share/vcftools/examples/merge-test-b.vcf
usr/share/vcftools/examples/merge-test-c.vcf
usr/share/vcftools/examples/merge-test.vcf.out
usr/share/vcftools/examples/parse-test.vcf
usr/share/vcftools/examples/perl-api-1.pl
usr/share/vcftools/examples/query-test.out
usr/share/vcftools/examples/shuffle-test.vcf
usr/share/vcftools/examples/subset.SNPs.out
usr/share/vcftools/examples/subset.indels.out
usr/share/vcftools/examples/subset.vcf
usr/share/vcftools/examples/valid-3.3.vcf
usr/share/vcftools/examples/valid-4.0.vcf
usr/share/vcftools/examples/valid-4.0.vcf.stats
usr/share/vcftools/examples/valid-4.1.vcf

Slackware package /usr/src/slapt-src/academic/vcftools/vcftools-0.1.16-i586-1salix15.0.txz created.

Installing package vcftools-0.1.16-i586-1salix15.0...
| vcftools (A program package designed for working with VCF files)
| 
| VCFtools is a program package designed for working with VCF
| files such as those generated by the 1000 Genomes Project.
| The aim of VCFtools is to provide methods for working with
| VCF files: validating, merging, comparing and calculate some
| basic population genetic statistics.
| 
| Home: http://vcftools.sourceforge.net/
| References: /usr/doc/vcftools-0.1.14_33_g1d27c24/References
| 
| 
|