fatal: not a git repository (or any of the parent directories): .git svn: E155007: '/usr/src/slapt-src/graphics/PyMOL/pymol-open-source-2.2.0' is not a working copy cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: In function ‘get_pdb_cryst1’, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 119 | strncpy(tmp, record, PDB_RECORD_LENGTH); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘get_pdb_coordinates’, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 144 | strncpy(numstr, record + 30, 8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 149 | strncpy(numstr+10, record + 38, 8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 154 | strncpy(numstr+20, record + 46, 8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘get_pdb_fields’, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 299 | strncpy(name, record + 12, 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 304 | strncpy(altloc, record + 16, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 308 | strncpy(resname, record + 17, 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 317 | strncpy(resid, record + 22, 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘get_pdb_coordinates’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘get_pdb_fields’, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 330 | strncpy(segname, record + 72, 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 339 | strncpy(elementsymbol, record + 76, 2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 437 | static qmdata_t* init_qmdata() { | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable] 48 | double timesteprst; | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 1106 | char word[3][BUFSIZ]; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 2264 | char word[7][BUFSIZ]; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 3573 | char word[6][BUFSIZ]; | ^~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable] 103 | int i, numatoms; | ^~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In function ‘get_pdb_header’, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 190 | strncpy(date, record + 50, 9); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 200 | strncpy(pdbcode, record + 62, 4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 615 | strncpy(sys_data->basis_string, data->basis_string, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 | sizeof(sys_data->basis_string)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 622 | strncpy(sys_data->version_string, data->version_string, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 | sizeof(sys_data->version_string)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_structure’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 477 | strncpy(atom->name, cur_atom->type, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 478 | strncpy(atom->type, cur_atom->type, sizeof(atom->type)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1618 | strncpy(atm->type, atname, sizeof(atm->type)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘strncat’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1422 | strncat(data->basis_string, &data->gbasis[3], 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘strncat’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1411 | strncat(data->basis_string, &data->gbasis[2], 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’: contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 103 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In function ‘get_fmoxyz’, inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1682 | strncpy(atm->type, atname, sizeof(atm->type)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 292 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 362 | strncpy(atom->name, buf, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 267 | strncpy(atom->name, buf, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’ 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ In function ‘vtf_error’, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | vtf_lineno, msg, line); | ~~~~~~~~~~~~~~~~~~~~~~ In function ‘vtf_parse_atom’, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘strncat’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 538 | strncat(msg, keyword, 200); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘strncat’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 629 | strncat(msg, keyword, 200); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: In function ‘symmetry_expand’, inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In function ‘get_pqr_cryst1’, inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 109 | strncpy(tmp, record, PQR_RECORD_LENGTH); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ In function ‘get_pqr_fields’, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 137 | strncpy(name, record+12, 4); name[4] = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 138 | strncpy(resname, record+17, 4); resname[4] = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 139 | strncpy(chain, record+21, 1); chain[1] = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 140 | strncpy(resid, record+22, 4); resid[4] = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:46: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 44 | static vasp_plugindata_t *vasp_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 267 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 269 | if(ok) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 405 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 407 | return ok; | ^~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:141:32: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 141 | static abinit_binary_header_t *abinit_header_malloc() | ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:154:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 154 | static abinit_plugindata_t *abinit_plugindata_malloc() | ^~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’: contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 133 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 127 | strncpy(atom->name, get_pte_label(idx), sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 437 | static qmdata_t* init_qmdata() { | ^~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 437 | static qmdata_t* init_qmdata() { | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable] 596 | molfile_qm_hessian_t *hessian_data; | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 350 | strncpy(atom->type, atname, sizeof(atom->type)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 351 | strncpy(atom->name, atname, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 317 | strncpy(atom->name, atname, sizeof(atom->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/PConv.cpp:38: warning: "PyString_Check" redefined 38 | #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) | In file included from /usr/include/python2.7/Python.h:97, from layer0/os_python.h:34, from layer1/PConv.cpp:17: /usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition 58 | #define PyString_Check(op) \ | layer5/main.cpp: In function ‘void launch(CPyMOLOptions*, int)’: layer5/main.cpp:1480:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1480 | char *myArgv[8] = {"pymol"}; | ^~~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveManageSelection(PyMOLGlobals*, const char*)’: layer3/Executive.cpp:15148:11: warning: ‘char* strcpy(char*, const char*)’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 15148 | strcpy(rec->name, name); | ~~~~~~^~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C contrib/champ/os_memory.c: In function ‘OSMemoryZero’: contrib/champ/os_memory.c:67:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 67 | while(count&&(((int)p)&mask)) { | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’: contrib/champ/os_memory.c:149:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 149 | hash=(int)rec; | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’: contrib/champ/os_memory.c:162:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 162 | hash=(int)rec; | ^ cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C fatal: not a git repository (or any of the parent directories): .git svn: E155007: '/usr/src/slapt-src/graphics/PyMOL/pymol-open-source-2.2.0' is not a working copy ./ install/ install/doinst.sh install/slack-desc usr/ usr/bin/ usr/bin/pymol usr/doc/ usr/doc/PyMOL-2.2.0/ usr/doc/PyMOL-2.2.0/AUTHORS usr/doc/PyMOL-2.2.0/ChangeLog usr/doc/PyMOL-2.2.0/LICENSE usr/doc/PyMOL-2.2.0/PyMOL.SlackBuild usr/doc/PyMOL-2.2.0/README usr/doc/PyMOL-2.2.0/README.md usr/lib64/ usr/lib64/python2.7/ usr/lib64/python2.7/site-packages/ usr/lib64/python2.7/site-packages/chempy/ usr/lib64/python2.7/site-packages/chempy/__init__.py usr/lib64/python2.7/site-packages/chempy/__init__.pyc usr/lib64/python2.7/site-packages/chempy/arc.py usr/lib64/python2.7/site-packages/chempy/arc.pyc usr/lib64/python2.7/site-packages/chempy/bmin/ usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py usr/lib64/python2.7/site-packages/chempy/bmin/__init__.pyc usr/lib64/python2.7/site-packages/chempy/bmin/commands.py usr/lib64/python2.7/site-packages/chempy/bmin/commands.pyc usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py usr/lib64/python2.7/site-packages/chempy/bmin/realtime.pyc usr/lib64/python2.7/site-packages/chempy/bmin/state.py usr/lib64/python2.7/site-packages/chempy/bmin/state.pyc usr/lib64/python2.7/site-packages/chempy/bmin/util.py usr/lib64/python2.7/site-packages/chempy/bmin/util.pyc usr/lib64/python2.7/site-packages/chempy/bond_amber.py usr/lib64/python2.7/site-packages/chempy/bond_amber.pyc usr/lib64/python2.7/site-packages/chempy/bond_mmff.py usr/lib64/python2.7/site-packages/chempy/bond_mmff.pyc usr/lib64/python2.7/site-packages/chempy/bonds.py usr/lib64/python2.7/site-packages/chempy/bonds.pyc usr/lib64/python2.7/site-packages/chempy/brick.py usr/lib64/python2.7/site-packages/chempy/brick.pyc usr/lib64/python2.7/site-packages/chempy/cc1.py usr/lib64/python2.7/site-packages/chempy/cc1.pyc usr/lib64/python2.7/site-packages/chempy/cex.py usr/lib64/python2.7/site-packages/chempy/cex.pyc usr/lib64/python2.7/site-packages/chempy/champ/ usr/lib64/python2.7/site-packages/chempy/champ/__init__.py usr/lib64/python2.7/site-packages/chempy/champ/__init__.pyc usr/lib64/python2.7/site-packages/chempy/champ/_champ.so usr/lib64/python2.7/site-packages/chempy/champ/amber99.py usr/lib64/python2.7/site-packages/chempy/champ/amber99.pyc usr/lib64/python2.7/site-packages/chempy/champ/assign.py usr/lib64/python2.7/site-packages/chempy/champ/assign.pyc usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.pyc usr/lib64/python2.7/site-packages/chempy/charge.py usr/lib64/python2.7/site-packages/chempy/charge.pyc usr/lib64/python2.7/site-packages/chempy/cif.py usr/lib64/python2.7/site-packages/chempy/cif.pyc usr/lib64/python2.7/site-packages/chempy/cpv.py usr/lib64/python2.7/site-packages/chempy/cpv.pyc usr/lib64/python2.7/site-packages/chempy/dictdb.py usr/lib64/python2.7/site-packages/chempy/dictdb.pyc usr/lib64/python2.7/site-packages/chempy/fast/ usr/lib64/python2.7/site-packages/chempy/fast/__init__.py usr/lib64/python2.7/site-packages/chempy/fast/__init__.pyc usr/lib64/python2.7/site-packages/chempy/fragments/ usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py usr/lib64/python2.7/site-packages/chempy/fragments/__init__.pyc usr/lib64/python2.7/site-packages/chempy/gamess1.py usr/lib64/python2.7/site-packages/chempy/gamess1.pyc usr/lib64/python2.7/site-packages/chempy/gms.py usr/lib64/python2.7/site-packages/chempy/gms.pyc usr/lib64/python2.7/site-packages/chempy/hetatm.py usr/lib64/python2.7/site-packages/chempy/hetatm.pyc usr/lib64/python2.7/site-packages/chempy/io.py usr/lib64/python2.7/site-packages/chempy/io.pyc usr/lib64/python2.7/site-packages/chempy/lst.py usr/lib64/python2.7/site-packages/chempy/lst.pyc usr/lib64/python2.7/site-packages/chempy/mae.py usr/lib64/python2.7/site-packages/chempy/mae.pyc usr/lib64/python2.7/site-packages/chempy/map.py usr/lib64/python2.7/site-packages/chempy/map.pyc usr/lib64/python2.7/site-packages/chempy/mass.py usr/lib64/python2.7/site-packages/chempy/mass.pyc usr/lib64/python2.7/site-packages/chempy/mmd.py usr/lib64/python2.7/site-packages/chempy/mmd.pyc usr/lib64/python2.7/site-packages/chempy/mmtf/ usr/lib64/python2.7/site-packages/chempy/mmtf/__init__.py usr/lib64/python2.7/site-packages/chempy/mmtf/__init__.pyc usr/lib64/python2.7/site-packages/chempy/mmtf/io.py usr/lib64/python2.7/site-packages/chempy/mmtf/io.pyc usr/lib64/python2.7/site-packages/chempy/models.py usr/lib64/python2.7/site-packages/chempy/models.pyc usr/lib64/python2.7/site-packages/chempy/mol.py usr/lib64/python2.7/site-packages/chempy/mol.pyc usr/lib64/python2.7/site-packages/chempy/mol2.py usr/lib64/python2.7/site-packages/chempy/mol2.pyc usr/lib64/python2.7/site-packages/chempy/neighbor.py usr/lib64/python2.7/site-packages/chempy/neighbor.pyc usr/lib64/python2.7/site-packages/chempy/pdb.py usr/lib64/python2.7/site-packages/chempy/pdb.pyc usr/lib64/python2.7/site-packages/chempy/pkl.py usr/lib64/python2.7/site-packages/chempy/pkl.pyc usr/lib64/python2.7/site-packages/chempy/place.py usr/lib64/python2.7/site-packages/chempy/place.pyc usr/lib64/python2.7/site-packages/chempy/protein.py usr/lib64/python2.7/site-packages/chempy/protein.pyc usr/lib64/python2.7/site-packages/chempy/protein_amber.py usr/lib64/python2.7/site-packages/chempy/protein_amber.pyc usr/lib64/python2.7/site-packages/chempy/protein_amber99.py usr/lib64/python2.7/site-packages/chempy/protein_amber99.pyc usr/lib64/python2.7/site-packages/chempy/protein_mmff.py usr/lib64/python2.7/site-packages/chempy/protein_mmff.pyc usr/lib64/python2.7/site-packages/chempy/protein_residues.py usr/lib64/python2.7/site-packages/chempy/protein_residues.pyc usr/lib64/python2.7/site-packages/chempy/sdf.py usr/lib64/python2.7/site-packages/chempy/sdf.pyc usr/lib64/python2.7/site-packages/chempy/solvate.py usr/lib64/python2.7/site-packages/chempy/solvate.pyc usr/lib64/python2.7/site-packages/chempy/tinker/ usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py usr/lib64/python2.7/site-packages/chempy/tinker/__init__.pyc usr/lib64/python2.7/site-packages/chempy/tinker/amber.py usr/lib64/python2.7/site-packages/chempy/tinker/amber.pyc usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py usr/lib64/python2.7/site-packages/chempy/tinker/keyword.pyc usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py usr/lib64/python2.7/site-packages/chempy/tinker/realtime.pyc usr/lib64/python2.7/site-packages/chempy/tinker/state.py usr/lib64/python2.7/site-packages/chempy/tinker/state.pyc usr/lib64/python2.7/site-packages/chempy/water_amber.py usr/lib64/python2.7/site-packages/chempy/water_amber.pyc usr/lib64/python2.7/site-packages/chempy/water_residues.py usr/lib64/python2.7/site-packages/chempy/water_residues.pyc usr/lib64/python2.7/site-packages/chempy/xyz.py usr/lib64/python2.7/site-packages/chempy/xyz.pyc usr/lib64/python2.7/site-packages/pmg_qt/ usr/lib64/python2.7/site-packages/pmg_qt/TextEditor.py usr/lib64/python2.7/site-packages/pmg_qt/TextEditor.pyc usr/lib64/python2.7/site-packages/pmg_qt/__init__.py usr/lib64/python2.7/site-packages/pmg_qt/__init__.pyc usr/lib64/python2.7/site-packages/pmg_qt/advanced_settings_gui.py usr/lib64/python2.7/site-packages/pmg_qt/advanced_settings_gui.pyc usr/lib64/python2.7/site-packages/pmg_qt/builder.py usr/lib64/python2.7/site-packages/pmg_qt/builder.pyc usr/lib64/python2.7/site-packages/pmg_qt/file_dialogs.py usr/lib64/python2.7/site-packages/pmg_qt/file_dialogs.pyc usr/lib64/python2.7/site-packages/pmg_qt/forms/ usr/lib64/python2.7/site-packages/pmg_qt/forms/__init__.py usr/lib64/python2.7/site-packages/pmg_qt/forms/__init__.pyc usr/lib64/python2.7/site-packages/pmg_qt/forms/askpartial.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/colors.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/fetch.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/load_mae.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/load_map.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/load_mtz.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/load_traj.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/movieexport.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/pluginitem.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/pluginmanager.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/png.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/props.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/render.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/save_molecule.ui usr/lib64/python2.7/site-packages/pmg_qt/forms/save_object.ui usr/lib64/python2.7/site-packages/pmg_qt/keymapping.py usr/lib64/python2.7/site-packages/pmg_qt/keymapping.pyc usr/lib64/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py usr/lib64/python2.7/site-packages/pmg_qt/mimic_pmg_tk.pyc usr/lib64/python2.7/site-packages/pmg_qt/mimic_tk.py usr/lib64/python2.7/site-packages/pmg_qt/mimic_tk.pyc usr/lib64/python2.7/site-packages/pmg_qt/properties_dialog.py usr/lib64/python2.7/site-packages/pmg_qt/properties_dialog.pyc usr/lib64/python2.7/site-packages/pmg_qt/pymol_gl_widget.py usr/lib64/python2.7/site-packages/pmg_qt/pymol_gl_widget.pyc usr/lib64/python2.7/site-packages/pmg_qt/pymol_qt_gui.py usr/lib64/python2.7/site-packages/pmg_qt/pymol_qt_gui.pyc usr/lib64/python2.7/site-packages/pmg_qt/syntax/ usr/lib64/python2.7/site-packages/pmg_qt/syntax/__init__.py usr/lib64/python2.7/site-packages/pmg_qt/syntax/__init__.pyc usr/lib64/python2.7/site-packages/pmg_qt/syntax/pml.py usr/lib64/python2.7/site-packages/pmg_qt/syntax/pml.pyc usr/lib64/python2.7/site-packages/pmg_qt/syntax/pmlparser.py usr/lib64/python2.7/site-packages/pmg_qt/syntax/pmlparser.pyc usr/lib64/python2.7/site-packages/pmg_qt/syntax/python.py usr/lib64/python2.7/site-packages/pmg_qt/syntax/python.pyc usr/lib64/python2.7/site-packages/pmg_qt/volume.py usr/lib64/python2.7/site-packages/pmg_qt/volume.pyc usr/lib64/python2.7/site-packages/pmg_tk/ usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.py usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.pyc usr/lib64/python2.7/site-packages/pmg_tk/Demo.py usr/lib64/python2.7/site-packages/pmg_tk/Demo.pyc usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.pyc usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.py usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.pyc usr/lib64/python2.7/site-packages/pmg_tk/Setting.py usr/lib64/python2.7/site-packages/pmg_tk/Setting.pyc usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.pyc usr/lib64/python2.7/site-packages/pmg_tk/__init__.py usr/lib64/python2.7/site-packages/pmg_tk/__init__.pyc usr/lib64/python2.7/site-packages/pmg_tk/skins/ usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.py usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.pyc usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/ usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.py usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyc usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyc 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usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0002start.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0010load.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0020multi.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0021multi.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0025view.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0030scene.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0040do.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0041do.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0050session.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0051session.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0052session.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/M0053session.log usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/T01.log 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usr/lib64/python2.7/site-packages/pymol/setting.pyc usr/lib64/python2.7/site-packages/pymol/shortcut.py usr/lib64/python2.7/site-packages/pymol/shortcut.pyc usr/lib64/python2.7/site-packages/pymol/stereochemistry/ usr/lib64/python2.7/site-packages/pymol/stereochemistry/__init__.py usr/lib64/python2.7/site-packages/pymol/stereochemistry/__init__.pyc usr/lib64/python2.7/site-packages/pymol/util.py usr/lib64/python2.7/site-packages/pymol/util.pyc usr/lib64/python2.7/site-packages/pymol/vfont.py usr/lib64/python2.7/site-packages/pymol/vfont.pyc usr/lib64/python2.7/site-packages/pymol/viewing.py usr/lib64/python2.7/site-packages/pymol/viewing.pyc usr/lib64/python2.7/site-packages/pymol/wizard/ usr/lib64/python2.7/site-packages/pymol/wizard/__init__.py usr/lib64/python2.7/site-packages/pymol/wizard/__init__.pyc usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py usr/lib64/python2.7/site-packages/pymol/wizard/annotation.pyc usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py usr/lib64/python2.7/site-packages/pymol/wizard/appearance.pyc usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.pyc usr/lib64/python2.7/site-packages/pymol/wizard/box.py usr/lib64/python2.7/site-packages/pymol/wizard/box.pyc usr/lib64/python2.7/site-packages/pymol/wizard/charge.py usr/lib64/python2.7/site-packages/pymol/wizard/charge.pyc usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.pyc usr/lib64/python2.7/site-packages/pymol/wizard/command.py usr/lib64/python2.7/site-packages/pymol/wizard/command.pyc usr/lib64/python2.7/site-packages/pymol/wizard/demo.py usr/lib64/python2.7/site-packages/pymol/wizard/demo.pyc usr/lib64/python2.7/site-packages/pymol/wizard/density.py usr/lib64/python2.7/site-packages/pymol/wizard/density.pyc usr/lib64/python2.7/site-packages/pymol/wizard/distance.py usr/lib64/python2.7/site-packages/pymol/wizard/distance.pyc usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py usr/lib64/python2.7/site-packages/pymol/wizard/dragging.pyc usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py usr/lib64/python2.7/site-packages/pymol/wizard/fedora.pyc usr/lib64/python2.7/site-packages/pymol/wizard/filter.py usr/lib64/python2.7/site-packages/pymol/wizard/filter.pyc usr/lib64/python2.7/site-packages/pymol/wizard/label.py usr/lib64/python2.7/site-packages/pymol/wizard/label.pyc usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py usr/lib64/python2.7/site-packages/pymol/wizard/measurement.pyc usr/lib64/python2.7/site-packages/pymol/wizard/message.py usr/lib64/python2.7/site-packages/pymol/wizard/message.pyc usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.pyc usr/lib64/python2.7/site-packages/pymol/wizard/nucmutagenesis.py usr/lib64/python2.7/site-packages/pymol/wizard/nucmutagenesis.pyc usr/lib64/python2.7/site-packages/pymol/wizard/pair_fit.py usr/lib64/python2.7/site-packages/pymol/wizard/pair_fit.pyc usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.py usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.pyc usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py usr/lib64/python2.7/site-packages/pymol/wizard/renaming.pyc usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.pyc usr/lib64/python2.7/site-packages/pymol/wizard/security.py usr/lib64/python2.7/site-packages/pymol/wizard/security.pyc usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.pyc usr/lib64/python2.7/site-packages/pymol/wizard/toggle.py usr/lib64/python2.7/site-packages/pymol/wizard/toggle.pyc usr/lib64/python2.7/site-packages/pymol/wizarding.py usr/lib64/python2.7/site-packages/pymol/wizarding.pyc usr/lib64/python2.7/site-packages/pymol/xray.py usr/lib64/python2.7/site-packages/pymol/xray.pyc usr/lib64/python2.7/site-packages/pymol/xwin.py usr/lib64/python2.7/site-packages/pymol/xwin.pyc usr/lib64/python2.7/site-packages/pymol2/ usr/lib64/python2.7/site-packages/pymol2/__init__.py usr/lib64/python2.7/site-packages/pymol2/__init__.pyc usr/lib64/python2.7/site-packages/pymol2/cmd2.py usr/lib64/python2.7/site-packages/pymol2/cmd2.pyc usr/share/ usr/share/applications/ usr/share/applications/PyMOL.desktop usr/share/pixmaps/ usr/share/pixmaps/pymol.svg /molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-x86_64-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-x86_64-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-x86_64-2.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-x86_64-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-x86_64-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-x86_64-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-x86_64-2.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-x86_64-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-x86_64-2.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-x86_64-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-x86_64-2.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-x86_64-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-x86_64-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-x86_64-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-x86_64-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-x86_64-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-x86_64-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-x86_64-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-x86_64-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-x86_64-2.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-x86_64-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-x86_64-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-x86_64-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-x86_64-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-x86_64-2.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-x86_64-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-x86_64-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-x86_64-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-x86_64-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-x86_64-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-x86_64-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-x86_64-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-x86_64-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-x86_64-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-x86_64-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-x86_64-2.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-x86_64-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-x86_64-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-x86_64-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-x86_64-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-x86_64-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-x86_64-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-x86_64-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-x86_64-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-x86_64-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-x86_64-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-x86_64-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-x86_64-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-x86_64-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-x86_64-2.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-x86_64-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-x86_64-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-x86_64-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-x86_64-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-x86_64-2.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-x86_64-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-x86_64-2.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-x86_64-2.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-x86_64-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-x86_64-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon g++ -pthread -shared -O2 -fPIC -std=c++11 build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/File.o build/temp.linux-x86_64-2.7/layer0/GenericBuffer.o build/temp.linux-x86_64-2.7/layer0/GraphicsUtil.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/ShaderPrg.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Util2.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/COLLADA.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/ScenePicking.o build/temp.linux-x86_64-2.7/layer1/SceneRay.o build/temp.linux-x86_64-2.7/layer1/SceneRender.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer2/AssemblyHelpers.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o build/temp.linux-x86_64-2.7/layer2/CifFile.o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/HydrogenAdder.o build/temp.linux-x86_64-2.7/layer2/MmodTyping.o build/temp.linux-x86_64-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o build/temp.linux-x86_64-2.7/layer2/MolV3000.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/RepSphereGenerate.o build/temp.linux-x86_64-2.7/layer2/RepSphereImmediate.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o build/temp.linux-x86_64-2.7/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/MaeExportHelpers.o build/temp.linux-x86_64-2.7/layer3/MoleculeExporter.o build/temp.linux-x86_64-2.7/layer3/MovieScene.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/X11/lib64 -L/usr/X11/lib -L/usr/lib64 -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -lpython2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -fPIC -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o gcc -pthread -shared -O2 -fPIC -std=c++11 build/temp.linux-x86_64-2.7/contrib/champ/champ.o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o build/temp.linux-x86_64-2.7/contrib/champ/err2.o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o build/temp.linux-x86_64-2.7/contrib/champ/list.o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o build/temp.linux-x86_64-2.7/contrib/champ/sort.o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o build/temp.linux-x86_64-2.7/contrib/champ/vla.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/chempy/champ/_champ.so running install running build running build_py running build_ext running install_lib creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64 creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7 creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/mmtf copying build/lib.linux-x86_64-2.7/chempy/mmtf/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/mmtf copying build/lib.linux-x86_64-2.7/chempy/mmtf/io.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/mmtf creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/keyword.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/realtime.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/state.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fast copying build/lib.linux-x86_64-2.7/chempy/fast/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fast creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fragments copying build/lib.linux-x86_64-2.7/chempy/fragments/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fragments creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/assign.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/formal_charges.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/_champ.so -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/arc.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_mmff.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bonds.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/brick.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cc1.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cex.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/charge.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cif.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cpv.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/dictdb.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gamess1.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gms.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/hetatm.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/io.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/lst.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mae.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/map.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mass.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mmd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/models.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol2.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/neighbor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pdb.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pkl.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/place.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber99.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_mmff.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_residues.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/sdf.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/solvate.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/xyz.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/TextEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/advanced_settings_gui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/builder.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/file_dialogs.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/keymapping.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/mimic_pmg_tk.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/mimic_tk.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/properties_dialog.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/pymol_gl_widget.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/pymol_qt_gui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt copying build/lib.linux-x86_64-2.7/pmg_qt/volume.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/syntax copying build/lib.linux-x86_64-2.7/pmg_qt/syntax/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/syntax copying build/lib.linux-x86_64-2.7/pmg_qt/syntax/pml.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/syntax copying build/lib.linux-x86_64-2.7/pmg_qt/syntax/pmlparser.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/syntax copying build/lib.linux-x86_64-2.7/pmg_qt/syntax/python.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/syntax creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/askpartial.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/colors.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/fetch.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/load_mae.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/load_map.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/load_mtz.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/load_traj.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/movieexport.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/pluginitem.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/pluginmanager.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/png.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/props.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/render.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/save_molecule.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms copying build/lib.linux-x86_64-2.7/pmg_qt/forms/save_object.ui -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_qt/forms creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/startup creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins copying build/lib.linux-x86_64-2.7/pmg_tk/skins/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/ColorEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Demo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PMGApp.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/SetEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Setting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/TextEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/volume.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pmg_tk creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-x86_64-2.7/pymol/opengl/glu/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/glu creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-x86_64-2.7/pymol/opengl/glut/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/glut creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/gl/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/opengl creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/epymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/contrib copying build/lib.linux-x86_64-2.7/pymol/contrib/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/contrib creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/Qt copying build/lib.linux-x86_64-2.7/pymol/Qt/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/Qt copying build/lib.linux-x86_64-2.7/pymol/Qt/utils.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/Qt creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/stereochemistry copying build/lib.linux-x86_64-2.7/pymol/stereochemistry/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/stereochemistry creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/annotation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/appearance.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/benchmark.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/box.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/charge.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/cleanup.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/command.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/demo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/density.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/distance.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/dragging.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/fedora.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/filter.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/label.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/measurement.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/message.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/mutagenesis.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/nucmutagenesis.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pair_fit.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pseudoatom.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/renaming.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/sculpting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/security.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/stereodemo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/toggle.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/__main__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/_gui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/api.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/callback.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cgo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/checking.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cmd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorprinting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorramping.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/commanding.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/completing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/computing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants_palette.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/controlling.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/creating.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/diagnosing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/experimenting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/exporting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/externing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/feedingback.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/fitting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/gui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/headering.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/helping.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/importing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/internal.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/invocation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keyboard.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keywords.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/lazyio.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/locking.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/m4x.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/menu.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/monitoring.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/morphing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/movie.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/moving.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parser.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parsing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/povray.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/preset.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/pymolhttpd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/querying.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/rpc.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selecting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selector.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/setting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/shortcut.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/util.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/vfont.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/viewing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/wizarding.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xray.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xwin.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/installation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/legacysupport.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui_qt.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/repository.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/_cmd.so -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/cmd2.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol2 byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/mmtf/io.py to io.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling 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/usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/lazyio.py to lazyio.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/morphing.py to morphing.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc running install_egg_info Writing /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol-2.2.0-py2.7.egg-info creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path copying data -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path/data copying test -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/bin Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/graphics/PyMOL/PyMOL-2.2.0-x86_64-1salix15.0.txz WARNING: zero length file usr/lib64/python2.7/site-packages/pmg_qt/forms/__init__.py WARNING: zero length file usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/T01.log Slackware package /usr/src/slapt-src/graphics/PyMOL/PyMOL-2.2.0-x86_64-1salix15.0.txz created. Installing package PyMOL-2.2.0-x86_64-1salix15.0... | PyMOL (molecular visualization system) | | PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D | visualization of proteins, small molecules, density, surfaces, and | trajectories. It also includes molecular editing, ray tracing, and | movies. | | Homepage: http://pymol.org | | | | |